mRNA_M-pyrifera_M_contig79502.18665.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig79502.18665.1
Unique NamemRNA_M-pyrifera_M_contig79502.18665.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig79502.18665.1 vs. uniprot
Match: A0A2E0XNI6_9BACT (Cytochrome c domain-containing protein n=2 Tax=Candidatus Poribacteria bacterium TaxID=2026781 RepID=A0A2E0XNI6_9BACT)

HSP 1 Score: 263 bits (671), Expect = 5.500e-81
Identity = 128/284 (45.07%), Postives = 177/284 (62.32%), Query Frame = 1
Query:   28 TVTFDVNARRPAKKLSDYGLFENLKEH--TLSAD----------VIPYELNALSFVDNARQESFVYVPSGQAANYQADNAFTFPIGSVLIQNIWFPADSGDSPREERLVETRLLLHNTKGWTAVPYLWNEAGTDADRAVIGHKSEIARSSSPDEPHTFNYLTPNMNECKSCHVNEDVMYPMGVTAANLNRTIEVDGSETNQLEYWQRIGLLEGLPEDRDSIPQIPDWGDESSATVERRARSWLDVNCSHCHNPRGAASTSGLDLTFQQSQPVRFGVYKPPVAAG 843
            +V  DV+ARRPAK +S+Y LF     +  T +A+          VIPY +N   FVD A+   ++Y+P    ANY+ ++ F FP+G+VL+Q + F  D GD+ + E+L+E RLL+H TKGW AVP+LW+    DA R V+G ++ +       +    +++TPNMN+CK CH N D + P+G  A  LN T    G    QL YW  IG L GLPED DS+P+ P W    + +++ R R+WLDVNC+ CHNP G+A  SGLDL+  Q  PV+FGVYKPP+AAG
Sbjct:   39 SVRVDVDARRPAKTMSEYNLFTLNPNYGSTGTAEFNFPLLPNEGVIPYTVNNSHFVDYAQSRYYLYLPPKTQANYRENDTFEFPVGTVLVQMLTFQNDLGDTSKGEQLIEIRLLIHQTKGWVAVPHLWDIEKADARRVVVGARTPVRWIDDDGKVQEHDFITPNMNQCKQCHKNRDRVQPIGTKARYLNHTSGQGGK--TQLAYWTEIGYLSGLPEDLDSVPKSPIWDKRGTGSIKERTRTWLDVNCAPCHNPEGSAIMSGLDLSVHQITPVKFGVYKPPIAAG 320          
BLAST of mRNA_M-pyrifera_M_contig79502.18665.1 vs. uniprot
Match: A0A4P6H715_9HYPH (Uncharacterized protein n=1 Tax=Mesorhizobium sp. Pch-S TaxID=2082387 RepID=A0A4P6H715_9HYPH)

HSP 1 Score: 243 bits (619), Expect = 1.350e-75
Identity = 119/262 (45.42%), Postives = 161/262 (61.45%), Query Frame = 1
Query:   58 PAKKLSDYGLFENLKEHTLSADVIPYELNALSFVDNARQESFVYVPSGQAANYQADNAFTFPIGSVLIQNIWFPADSGDSPREERLVETRLLLHNTKGWTAVPYLWNEAGTDADRAVIGHKSEIARSSSPDEPHTFNYLTPNMNECKSCHVNEDVMYPMGVTAANLNRTIEVDGSETNQLEYWQRIGLLEGLPEDRDSIPQIPDWGDESSATVERRARSWLDVNCSHCHNPRGAASTSGLDLTFQQSQPVRFGVYKPPVAAG 843
            P K+LS++G FE+L++ T ++ V+P+ L    F D A +  FVYVP+GQA  Y    AF FP+G+ L++   FPAD      + RL+ETR+LLH+  GW A  YLWN+  TDA   + G K  IA       P +F+Y  PN N+CK+CH     + P+G  A NLN          NQL +W+  GLL G+PE  + IP   DW D++ A +E+RAR+WLDVNC+HCH   G AS +GL LTF ++ PVR+GV K P AAG
Sbjct:   22 PPKQLSEFGFFEDLQKQTPASGVVPFRLATPLFSDGAEKFRFVYVPNGQAVKYDPTEAFDFPVGAALVKTFAFPADYRKPGEKLRLIETRVLLHHADGWLAWAYLWNDQQTDATLKIAGAKIAIATIGIDGAPLSFDYSVPNKNQCKACHAFNGKITPLGPKARNLNIDYAYANGAENQLAHWRAAGLLAGVPETAE-IPAATDWRDDA-APLEKRARTWLDVNCAHCHRAEGPASNTGLFLTFGENVPVRYGVLKRPAAAG 281          
BLAST of mRNA_M-pyrifera_M_contig79502.18665.1 vs. uniprot
Match: A0A1I2EV57_9BACT (Uncharacterized protein n=1 Tax=Thermoflexibacter ruber TaxID=1003 RepID=A0A1I2EV57_9BACT)

HSP 1 Score: 243 bits (619), Expect = 1.880e-75
Identity = 114/261 (43.68%), Postives = 158/261 (60.54%), Query Frame = 1
Query:   64 KKLSDYGLFEN-LKEHTLSADVIPYELNALSFVDNARQESFVYVPSGQAANYQADNAFTFPIGSVLIQNIWFPADSGDSPREERLVETRLLLHNTKGWTAVPYLWNEAGTDADRAVIGHKSEIARSSSPDEPHTFNYLTPNMNECKSCHVNEDVMYPMGVTAANLNRTIEVDGSETNQLEYWQRIGLLEGLPEDRDSIPQIPDWGDESSATVERRARSWLDVNCSHCHNPRGAASTSGLDLTFQQSQPVRFGVYKPPVAAG 843
            +KLSDYG F   L +   S  VIPY+LN   F D A ++ F+ +PSG  A + A   F FP G+VLI+N ++P D  D  +  R++ETRLL+H  +GW A+PY+WNE  T+A   V G   E++      +     Y  PN+N+CK CH+ +  M P+G+ A  LN        E NQL  W+++G+LE LPE    + Q+P W D +S  +  RAR+WLD+NC+ CHNP+GAASTSGL L + Q      G++K PVAAG
Sbjct:   33 EKLSDYGFFAGKLADLNPSEGVIPYQLNTPLFSDYAEKQRFIKLPSGTTAQFHAIETFQFPKGTVLIKNFYYPFDVRDKSKGRRILETRLLIHQEEGWVALPYIWNEEQTEAYLDVAGDTKEVSWKDEKGKKQVLQYTIPNVNQCKGCHLKDGKMTPIGLVARQLNGNFPYKEGEENQLLKWKKLGILENLPE-LSQVSQVPVWADANSGDLNSRARAWLDINCAFCHNPKGAASTSGLFLEYNQDNATALGIFKNPVAAG 292          
BLAST of mRNA_M-pyrifera_M_contig79502.18665.1 vs. uniprot
Match: A0A8J3D0T5_9BACT (Uncharacterized protein n=1 Tax=Persicitalea jodogahamensis TaxID=402147 RepID=A0A8J3D0T5_9BACT)

HSP 1 Score: 243 bits (619), Expect = 2.120e-75
Identity = 119/275 (43.27%), Postives = 164/275 (59.64%), Query Frame = 1
Query:   22 ESTVTFDVNARRPAKKLSDYGLFE-NLKEHTLSADVIPYELNALSFVDNARQESFVYVPSGQAANYQADNAFTFPIGSVLIQNIWFPADSGDSPREERLVETRLLLHNTKGWTAVPYLWNEAGTDADRAVIGHKSEIARSSSPDEPHTFNYLTPNMNECKSCHVNEDVMYPMGVTAANLNRTIEVDGSETNQLEYWQRIGLLEGLPEDRDSIPQIPDWGDESSATVERRARSWLDVNCSHCHNPRGAASTSGLDLTFQQSQPVRFGVYKPPVAAG 843
            E+ ++ D     P + LS+YG F  N  E   +A VIPY LN   F D A++  FV  P+GQ+A Y  D    FP+G+VLI+  ++P D+ +     RL+ETRLLLH + GW A+ Y+WNE  TDA   V G   E+A      +  T  Y  PN+N+CK CH   + + P+G +A  LN T+    +  NQL +WQR+GLL  LP D + +P  P W    + +V  RAR+WLD+NC+HCH+P G A +SGL L +Q++ P R GV K PVAAG
Sbjct:   22 EAMLSADTMPLAPKEMLSEYGFFAGNPAEQRPAAGVIPYALNTPLFSDYAQKLRFVKFPNGQSAAYNPDQVLDFPVGTVLIKTFYYPKDARNPALGRRLMETRLLLHESNGWKALEYIWNEEQTDALLEVAGDSKEVAWIDEQGDKRTLTYSMPNLNQCKGCHNQNEKLLPIGPSARQLNGTLAYADTTENQLVHWQRLGLLTALP-DLEEVPTTPRWDAPGTGSVAERARAWLDINCAHCHSPAGPARSSGLLLHWQETDPTRLGVMKAPVAAG 295          
BLAST of mRNA_M-pyrifera_M_contig79502.18665.1 vs. uniprot
Match: A0A7Y5C7U4_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7Y5C7U4_9BACT)

HSP 1 Score: 240 bits (613), Expect = 1.170e-73
Identity = 118/285 (41.40%), Postives = 160/285 (56.14%), Query Frame = 1
Query:   13 RPIESTVT-------FDVNARRPAKKL-SDYGLFENLKEHTLSADVIPYELNALSFVDNARQESFVYVPSGQAANYQADNAFTFPIGSVLIQNIWFPADSGDSPREERLVETRLLLHNTKGWTAVPYLWNEAGTDADRAVIGHKSEIARSSSPDEPHTFNYLTPNMNECKSCHVNEDVMYPMGVTAANLNRTIEVDGSETNQLEYWQRIGLLEGLPEDRDSIPQIPDWGDESSATVERRARSWLDVNCSHCHNPRGAASTSGLDLTFQQSQPVRFGVYKPPVAAG 843
            +P+ STV        F+     PA  L S++G F++L     +ADVIP+ LN   F D AR   F+ VP G    Y  D    FP+G+VL+Q    P+   D    E+L+ETR++     GW AV Y W++ GTDA RA+ G    ++      +  +  Y+  N N+CK CH N+ VM  +G T ANLNR  + +    NQ+EYW R G+L   P      P++  W D +  TVE+RAR+WL VNC+HCHNP GA   SGLDL   Q  P++ G+YKPPVAAG
Sbjct:   49 QPVASTVAADSEDFLFESAENEPAPTLLSEFGAFQDLARQVPAADVIPFALNVEHFADYARVSRFLRVPRGAQIRYSTDGVLEFPVGTVLLQTFRLPSAQSDPAASEQLIETRVMRKLQNGWDAVAYQWSKDGTDARRALAGGIVPLSAVGGVFDGLSHRYIILNANDCKRCHENQGVMLAIGPTIANLNRDFQYEDGNANQIEYWTRRGILTEAPASPSEAPRLVRWDDPNDGTVEQRARTWLHVNCAHCHNPLGAGGVSGLDLRLTQQNPIQLGIYKPPVAAG 333          
BLAST of mRNA_M-pyrifera_M_contig79502.18665.1 vs. uniprot
Match: A0A1I3QWR2_9HYPH (Uncharacterized protein n=1 Tax=Aquamicrobium aerolatum DSM 21857 TaxID=1121003 RepID=A0A1I3QWR2_9HYPH)

HSP 1 Score: 236 bits (603), Expect = 5.110e-73
Identity = 119/266 (44.74%), Postives = 163/266 (61.28%), Query Frame = 1
Query:   49 ARRPAKKLSDYGLFENLKEHTLSADVIPYELNALSFVDNARQESFVYVPSGQAANYQADNAFTFPIGSVLIQNIWFPADSGDSPREERLVETRLLLHNTKGWTAVPYLWNEAGTDADRAVIGHKSEIARSSSPDEPHTFNYLTPNMNECKSCHVNEDVMYPMGVTAANLNRTIEV-DGSETNQLEYWQRIGLLEGLPEDRDSIPQIPDWGDESSATVERRARSWLDVNCSHCHNPRGAASTSGLDLTFQQSQPVRFGVYKPPVAAG 843
            A RP K LS++G F++LK+   +A V+ +  +   F D A ++ FVYVP G+AA+Y    AF FP GS LI++  FPAD  D+     ++ETR+LL +  GW A  Y+WN+  TDA   + G K  +   +    P +F Y  PN N+CK+CH    V+ P+G  A NL+  +   DG+  NQLEYWQ IG+LEG+P   D I  +PDW DE+ A ++ RAR WLDVNC+HCH   G AS SGL L + + +   FG+ K PVAAG
Sbjct:   31 APRPPKLLSEFGFFDDLKDRKPAAGVVNFAPSTALFSDGALKDRFVYVPEGKAASYVEGEAFEFPTGSALIKSFSFPADYADASSVVSIIETRVLLKHDSGWQAWAYVWNDEQTDATLNIAGAKVPVVSVAEDGAPISFTYAVPNKNQCKACHDVGGVIVPLGPKARNLHFELTYPDGTVANQLEYWQTIGILEGVPA-LDRIEAVPDWRDET-ADIDARARGWLDVNCAHCHRRTGPASNSGLFLNWSEPKGPSFGINKRPVAAG 294          
BLAST of mRNA_M-pyrifera_M_contig79502.18665.1 vs. uniprot
Match: A0A0C1LK23_9BACT (Lipoprotein n=1 Tax=Flavihumibacter solisilvae TaxID=1349421 RepID=A0A0C1LK23_9BACT)

HSP 1 Score: 236 bits (601), Expect = 9.090e-73
Identity = 110/261 (42.15%), Postives = 160/261 (61.30%), Query Frame = 1
Query:   64 KKLSDYGLFE-NLKEHTLSADVIPYELNALSFVDNARQESFVYVPSGQAANYQADNAFTFPIGSVLIQNIWFPADSGDSPREERLVETRLLLHNTKGWTAVPYLWNEAGTDADRAVIGHKSEIARSSSPDEPHTFNYLTPNMNECKSCHVNEDVMYPMGVTAANLNRTIEVDGSETNQLEYWQRIGLLEGLPEDRDSIPQIPDWGDESSATVERRARSWLDVNCSHCHNPRGAASTSGLDLTFQQSQPVRFGVYKPPVAAG 843
            +KLS+YG F  NL E   + DV+PY+LN+  F + A +  F+ +P+G  A Y  D+ F  P+G++LI+N ++PAD  +  +  +++ETRLL+H   GW A+PY+WN+  T+A   V G   +I+   +  +  + +Y  PN N+C+ CH N D + P+G+ A +LNR         NQLEYWQ+ G+L GLP     +P    W +  S +VE RAR++LD+NC HCH P GAA+TSGL L    S P   G+ K PVAAG
Sbjct:   32 EKLSEYGFFTGNLAELNPAEDVVPYQLNSSLFSNYAEKARFIKLPAGLTAQYNRDSVFGMPVGTILIKNFYYPADFRNPSKGRKILETRLLVHEQDGWNALPYIWNDEQTEAFYDVAGDVRKISYIDAGGKKVSTSYAIPNKNQCRGCHSNRDQLIPIGIAARHLNREYTFADGTKNQLEYWQQKGMLTGLPSS--GLPANSKWDEAGSGSVESRARAYLDINCGHCHQPNGAANTSGLMLDMHTSNPTALGIMKTPVAAG 290          
BLAST of mRNA_M-pyrifera_M_contig79502.18665.1 vs. uniprot
Match: UPI0019B59F7B (Uncharacterized protein n=1 Tax=Spirosoma sp. TaxID=1899569 RepID=UPI0019B59F7B)

HSP 1 Score: 235 bits (600), Expect = 1.490e-72
Identity = 112/261 (42.91%), Postives = 157/261 (60.15%), Query Frame = 1
Query:   64 KKLSDYGLFEN-LKEHTLSADVIPYELNALSFVDNARQESFVYVPSGQAANYQADNAFTFPIGSVLIQNIWFPADSGDSPREERLVETRLLLHNTKGWTAVPYLWNEAGTDADRAVIGHKSEIARSSSPDEPHTFNYLTPNMNECKSCHVNEDVMYPMGVTAANLNRTIEVDGSETNQLEYWQRIGLLEGLPEDRDSIPQIPDWGDESSATVERRARSWLDVNCSHCHNPRGAASTSGLDLTFQQSQPVRFGVYKPPVAAG 843
            + LS++G F   L +      V+PY LN   F D A +  FV +P+GQA  Y  D+   FP+G+VLI+  +FP D  D+ +  RLVETRLL+H T GW A+ Y+WN   TDA   V G ++E+A        H   Y+ PN+N+CK CH   + + P+G +A  LN  +       NQL +WQ+ GLL  LP   D  P+ P W D ++ T++ RAR+WLD+NC+HCH P G ASTSGL+L + ++ P  +G+ K PVAAG
Sbjct:   34 ENLSEWGFFAGKLADQKPIDGVLPYRLNTPLFSDYAEKLRFVKLPAGQAVPYNPDDVLAFPVGTVLIKTFYFPTDFRDATKGRRLVETRLLVHETNGWKALEYVWNTDQTDAVLEVAGEQTEVAYLDGEGNAHRQTYVMPNLNQCKGCHNRSEKLMPIGPSARQLNGKLAYASGPENQLTHWQKHGLLTNLPALTDR-PKTPVWNDATTGTLDTRARAWLDINCAHCHRPDGPASTSGLNLRYNETNPTAWGILKTPVAAG 293          
BLAST of mRNA_M-pyrifera_M_contig79502.18665.1 vs. uniprot
Match: A0A5D4H3Q3_9HYPH (Uncharacterized protein n=2 Tax=Mesorhizobium microcysteis TaxID=2682781 RepID=A0A5D4H3Q3_9HYPH)

HSP 1 Score: 236 bits (602), Expect = 1.770e-72
Identity = 118/265 (44.53%), Postives = 157/265 (59.25%), Query Frame = 1
Query:   49 ARRPAKKLSDYGLFENLKEHTLSADVIPYELNALSFVDNARQESFVYVPSGQAANYQADNAFTFPIGSVLIQNIWFPADSGDSPREERLVETRLLLHNTKGWTAVPYLWNEAGTDADRAVIGHKSEIARSSSPDEPHTFNYLTPNMNECKSCHVNEDVMYPMGVTAANLNRTIEVDGSETNQLEYWQRIGLLEGLPEDRDSIPQIPDWGDESSATVERRARSWLDVNCSHCHNPRGAASTSGLDLTFQQSQPVRFGVYKPPVAAG 843
            A+RP   LS++G FE+ +    S  V+P+      F D A+++ FVYVP G AA Y AD AF FP GS LI++  FPAD  D     RL+ETR++L +  GW A  YLWN+  TDA+  + G + EI          +F Y  PN N+CK+CH     + P+G  A NLN   E      +QLE W+  G+L+GLP+D  S+  +PDW DE  A ++ RAR+WLDVNC+HCH   G AS SGL LT+Q+      G+ K PVAAG
Sbjct:   62 AKRPPALLSEFGFFEDARAQNPSDRVMPFAPRTALFSDGAQKDRFVYVPLGTAATYVADEAFEFPTGSALIKSFSFPADRRDPEANVRLIETRVMLKHEDGWHAWAYLWNDEQTDAELKIAGARVEIDTIDEAGTALSFTYSVPNKNQCKACHALGGEIVPLGPKARNLNFEHEYHDGGASQLERWREAGILKGLPDDLASLDTVPDWRDED-AQLDARARTWLDVNCAHCHRREGPASNSGLYLTWQEPSGPALGINKRPVAAG 325          
BLAST of mRNA_M-pyrifera_M_contig79502.18665.1 vs. uniprot
Match: A0A2N5B2D2_RHILI (Cytochrome c domain-containing protein n=2 Tax=Rhizobium loti TaxID=381 RepID=A0A2N5B2D2_RHILI)

HSP 1 Score: 234 bits (596), Expect = 3.300e-72
Identity = 121/279 (43.37%), Postives = 160/279 (57.35%), Query Frame = 1
Query:    7 PVRPIESTVTFDVNARRPAKKLSDYGLFENLKEHTLSADVIPYELNALSFVDNARQESFVYVPSGQAANYQADNAFTFPIGSVLIQNIWFPADSGDSPREERLVETRLLLHNTKGWTAVPYLWNEAGTDADRAVIGHKSEIARSSSPDEPHTFNYLTPNMNECKSCHVNEDVMYPMGVTAANLNRTIEVDGSETNQLEYWQRIGLLEGLPEDRDSIPQIPDWGDESSATVERRARSWLDVNCSHCHNPRGAASTSGLDLTFQQSQPVRFGVYKPPVAAG 843
            P R +      D     P K+LS++  FE+L++     +V+P+ L    F D A +  FVY+P GQAA Y    AF FPIG+ LI+   FPAD      + RLVETR+LLH+  GW A  YLWN+  TDA   + G K  I+  ++   P +F+Y  PN N+CK+CH     + P+G  A NLN      G   NQ+ +W   GLL G+PE    IP   DW D + A +E+RAR+WLDVNC+HCH   G AS +GL LT  +  PVR+GV K P AAG
Sbjct:    2 PARAVSDAAILDTT---PPKQLSEFRFFEDLQKQAPVPEVVPFRLATPLFSDGAEKFRFVYLPKGQAAKYDPVEAFDFPIGTALIKTFAFPADYRKPDEKLRLVETRILLHHEGGWLAWAYLWNDQQTDATLKIAGAKVAISTIATDGAPLSFDYSVPNKNQCKACHAFNGKITPLGPKARNLNVDYAYAGGAENQIAHWIAAGLLSGVPEPA-GIPAAADWRDVT-APLEKRARTWLDVNCAHCHRAEGPASNTGLFLTSGEDVPVRYGVLKRPAAAG 275          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig79502.18665.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E0XNI6_9BACT5.500e-8145.07Cytochrome c domain-containing protein n=2 Tax=Can... [more]
A0A4P6H715_9HYPH1.350e-7545.42Uncharacterized protein n=1 Tax=Mesorhizobium sp. ... [more]
A0A1I2EV57_9BACT1.880e-7543.68Uncharacterized protein n=1 Tax=Thermoflexibacter ... [more]
A0A8J3D0T5_9BACT2.120e-7543.27Uncharacterized protein n=1 Tax=Persicitalea jodog... [more]
A0A7Y5C7U4_9BACT1.170e-7341.40Uncharacterized protein n=1 Tax=Candidatus Hydroge... [more]
A0A1I3QWR2_9HYPH5.110e-7344.74Uncharacterized protein n=1 Tax=Aquamicrobium aero... [more]
A0A0C1LK23_9BACT9.090e-7342.15Lipoprotein n=1 Tax=Flavihumibacter solisilvae Tax... [more]
UPI0019B59F7B1.490e-7242.91Uncharacterized protein n=1 Tax=Spirosoma sp. TaxI... [more]
A0A5D4H3Q3_9HYPH1.770e-7244.53Uncharacterized protein n=2 Tax=Mesorhizobium micr... [more]
A0A2N5B2D2_RHILI3.300e-7243.37Cytochrome c domain-containing protein n=2 Tax=Rhi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig79502contigM-pyrifera_M_contig79502:123..965 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score241.1
Seed ortholog evalue6.2e-61
Seed eggNOG ortholog1333998.M2A_0059
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Cytochrome c
EggNOG OGs1QUPA@1224,2U3YK@28211,COG2010@1,COG2010@2
COG Functional cat.C
Best tax levelAlphaproteobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size843
Cds size843
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816698.6149812-CDS-M-pyrifera_M_contig79502:122..9651622816698.6149812-CDS-M-pyrifera_M_contig79502:122..965Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79502 123..965 +
1692278126.4330606-CDS-M-pyrifera_M_contig79502:122..9651692278126.4330606-CDS-M-pyrifera_M_contig79502:122..965Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79502 123..965 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig79502.18665.1prot_M-pyrifera_M_contig79502.18665.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig79502 123..965 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig79502.18665.1

>prot_M-pyrifera_M_contig79502.18665.1 ID=prot_M-pyrifera_M_contig79502.18665.1|Name=mRNA_M-pyrifera_M_contig79502.18665.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=281bp
MPPVRPIESTVTFDVNARRPAKKLSDYGLFENLKEHTLSADVIPYELNAL
SFVDNARQESFVYVPSGQAANYQADNAFTFPIGSVLIQNIWFPADSGDSP
REERLVETRLLLHNTKGWTAVPYLWNEAGTDADRAVIGHKSEIARSSSPD
EPHTFNYLTPNMNECKSCHVNEDVMYPMGVTAANLNRTIEVDGSETNQLE
YWQRIGLLEGLPEDRDSIPQIPDWGDESSATVERRARSWLDVNCSHCHNP
RGAASTSGLDLTFQQSQPVRFGVYKPPVAAG
back to top

mRNA from alignment at M-pyrifera_M_contig79502:123..965+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig79502.18665.1 ID=mRNA_M-pyrifera_M_contig79502.18665.1|Name=mRNA_M-pyrifera_M_contig79502.18665.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=843bp|location=Sequence derived from alignment at M-pyrifera_M_contig79502:123..965+ (Macrocystis pyrifera P11B4 male)
ATGCCACCTGTCCGACCGATTGAATCAACGGTCACTTTTGATGTGAATGC ACGTCGCCCGGCCAAGAAGCTCTCAGACTACGGACTGTTCGAGAACCTCA AGGAACACACTCTGAGTGCGGACGTGATCCCCTATGAGTTGAACGCACTC AGCTTCGTCGACAACGCCCGTCAGGAAAGTTTTGTGTATGTCCCGTCAGG TCAGGCGGCAAACTATCAGGCGGACAACGCGTTCACGTTTCCGATTGGTT CCGTCCTGATCCAGAATATCTGGTTCCCTGCAGATTCGGGTGACTCCCCT CGTGAGGAGCGATTAGTCGAAACGCGACTGTTGCTACACAACACCAAGGG TTGGACTGCTGTCCCCTATTTGTGGAACGAAGCAGGCACAGACGCTGATC GCGCTGTGATCGGACATAAGTCCGAGATCGCACGCAGTTCGTCACCCGAT GAACCGCATACGTTCAACTACCTCACGCCGAACATGAACGAGTGCAAGAG CTGTCATGTGAACGAAGATGTCATGTACCCGATGGGCGTGACAGCTGCGA ACCTCAATCGCACGATTGAGGTAGATGGTTCCGAAACCAACCAACTTGAG TACTGGCAACGAATCGGTCTGCTCGAAGGCCTGCCCGAAGATCGTGACAG TATTCCGCAGATTCCCGACTGGGGTGATGAGTCTTCAGCCACGGTGGAAC GCCGGGCTCGCTCATGGCTGGATGTGAATTGCTCGCATTGCCACAATCCG CGCGGAGCGGCAAGCACCTCTGGTCTAGACCTCACTTTTCAACAGAGTCA GCCGGTGCGTTTTGGAGTCTACAAGCCCCCGGTCGCTGCTGGC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig79502:123..965+

>mRNA_M-pyrifera_M_contig79502.18665.1 ID=mRNA_M-pyrifera_M_contig79502.18665.1|Name=mRNA_M-pyrifera_M_contig79502.18665.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1686bp|location=Sequence derived from alignment at M-pyrifera_M_contig79502:123..965+ (Macrocystis pyrifera P11B4 male)
ATGCCACCTGTCCGACCGATTGAATCAACGGTCACTTTTGATGTGAATGC
ACGTCGCCCGGCCAAGAAGCTCTCAGACTACGGACTGTTCGAGAACCTCA
AGGAACACACTCTGAGTGCGGACGTGATCCCCTATGAGTTGAACGCACTC
AGCTTCGTCGACAACGCCCGTCAGGAAAGTTTTGTGTATGTCCCGTCAGG
TCAGGCGGCAAACTATCAGGCGGACAACGCGTTCACGTTTCCGATTGGTT
CCGTCCTGATCCAGAATATCTGGTTCCCTGCAGATTCGGGTGACTCCCCT
CGTGAGGAGCGATTAGTCGAAACGCGACTGTTGCTACACAACACCAAGGG
TTGGACTGCTGTCCCCTATTTGTGGAACGAAGCAGGCACAGACGCTGATC
GCGCTGTGATCGGACATAAGTCCGAGATCGCACGCAGTTCGTCACCCGAT
GAACCGCATACGTTCAACTACCTCACGCCGAACATGAACGAGTGCAAGAG
CTGTCATGTGAACGAAGATGTCATGTACCCGATGGGCGTGACAGCTGCGA
ACCTCAATCGCACGATTGAGGTAGATGGTTCCGAAACCAACCAACTTGAG
TACTGGCAACGAATCGGTCTGCTCGAAGGCCTGCCCGAAGATCGTGACAG
TATTCCGCAGATTCCCGACTGGGGTGATGAGTCTTCAGCCACGGTGGAAC
GCCGGGCTCGCTCATGGCTGGATGTGAATTGCTCGCATTGCCACAATCCG
CGCGGAGCGGCAAGCACCTCTGGTCTAGACCTCACTTTTCAACAGAGTCA
GCCGGTGCGTTTTGGAGTCTACAAGCCCCCGGTCGCTGCTGGCATGCCAC
CTGTCCGACCGATTGAATCAACGGTCACTTTTGATGTGAATGCACGTCGC
CCGGCCAAGAAGCTCTCAGACTACGGACTGTTCGAGAACCTCAAGGAACA
CACTCTGAGTGCGGACGTGATCCCCTATGAGTTGAACGCACTCAGCTTCG
TCGACAACGCCCGTCAGGAAAGTTTTGTGTATGTCCCGTCAGGTCAGGCG
GCAAACTATCAGGCGGACAACGCGTTCACGTTTCCGATTGGTTCCGTCCT
GATCCAGAATATCTGGTTCCCTGCAGATTCGGGTGACTCCCCTCGTGAGG
AGCGATTAGTCGAAACGCGACTGTTGCTACACAACACCAAGGGTTGGACT
GCTGTCCCCTATTTGTGGAACGAAGCAGGCACAGACGCTGATCGCGCTGT
GATCGGACATAAGTCCGAGATCGCACGCAGTTCGTCACCCGATGAACCGC
ATACGTTCAACTACCTCACGCCGAACATGAACGAGTGCAAGAGCTGTCAT
GTGAACGAAGATGTCATGTACCCGATGGGCGTGACAGCTGCGAACCTCAA
TCGCACGATTGAGGTAGATGGTTCCGAAACCAACCAACTTGAGTACTGGC
AACGAATCGGTCTGCTCGAAGGCCTGCCCGAAGATCGTGACAGTATTCCG
CAGATTCCCGACTGGGGTGATGAGTCTTCAGCCACGGTGGAACGCCGGGC
TCGCTCATGGCTGGATGTGAATTGCTCGCATTGCCACAATCCGCGCGGAG
CGGCAAGCACCTCTGGTCTAGACCTCACTTTTCAACAGAGTCAGCCGGTG
CGTTTTGGAGTCTACAAGCCCCCGGTCGCTGCTGGC
back to top