mRNA_M-pyrifera_M_contig7938.18638.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7938.18638.1
Unique NamemRNA_M-pyrifera_M_contig7938.18638.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7938.18638.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7938contigM-pyrifera_M_contig7938:4694..5505 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size812
Cds size417
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7938.18638.1prot_M-pyrifera_M_contig7938.18638.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7938 4977..5393 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816697.250186-UTR-M-pyrifera_M_contig7938:4693..49761622816697.250186-UTR-M-pyrifera_M_contig7938:4693..4976Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7938 4694..4976 +
1692278125.5799816-UTR-M-pyrifera_M_contig7938:4693..49761692278125.5799816-UTR-M-pyrifera_M_contig7938:4693..4976Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7938 4694..4976 +
1622816697.2735758-UTR-M-pyrifera_M_contig7938:5393..55051622816697.2735758-UTR-M-pyrifera_M_contig7938:5393..5505Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7938 5394..5505 +
1692278125.6028152-UTR-M-pyrifera_M_contig7938:5393..55051692278125.6028152-UTR-M-pyrifera_M_contig7938:5393..5505Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7938 5394..5505 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816697.261947-CDS-M-pyrifera_M_contig7938:4976..53931622816697.261947-CDS-M-pyrifera_M_contig7938:4976..5393Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7938 4977..5393 +
1692278125.5917952-CDS-M-pyrifera_M_contig7938:4976..53931692278125.5917952-CDS-M-pyrifera_M_contig7938:4976..5393Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7938 4977..5393 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7938.18638.1

>prot_M-pyrifera_M_contig7938.18638.1 ID=prot_M-pyrifera_M_contig7938.18638.1|Name=mRNA_M-pyrifera_M_contig7938.18638.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=139bp
MTTFFFASRRFLCYRRKKAVDISFVFTSVSSLFGGKSDSDKLQRIFFRFL
TVSFTGGRVWGRVTYGTRTAVSTTCLFFVVFFSFFLSANFKFRFIFLFFF
VVRDSEGRGGGRYTGVKKTSINCGRELLSLTVRGTSIK*
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mRNA from alignment at M-pyrifera_M_contig7938:4694..5505+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7938.18638.1 ID=mRNA_M-pyrifera_M_contig7938.18638.1|Name=mRNA_M-pyrifera_M_contig7938.18638.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=812bp|location=Sequence derived from alignment at M-pyrifera_M_contig7938:4694..5505+ (Macrocystis pyrifera P11B4 male)
ATTCGGAGGGCGGGGGGGGGATGGAATTTGTTGGGAGCCGATTTGGAAAG
GACATTGCACAACGATAGCAGTAGTAGCAACAAACAGTTCATAATTACGA
ACGTTGTACGCTACTAGTATTACAGCAGTAGGCCACAGATTTTAGAAGGA
CACCTGCAGGCACTGTCTGCATCGATTGCCCGCCGAGCCCCCCCCCTCCG
AGGAAAATGCGCAAAAATTCTTTCGTTTGATTTGCGGCCGGGCGTTTCCT
TTCTCTTGGAGGAGGGAGAGGCGCGGGGAAATCATGACGACTTTTTTCTT
CGCTTCGAGGCGCTTTCTCTGTTATAGGAGGAAGAAAGCGGTGGATATTT
CTTTCGTTTTTACGAGCGTTTCCTCTTTGTTCGGAGGAAAGAGTGACTCG
GATAAATTGCAAAGAATTTTCTTTCGCTTCTTGACCGTTTCTTTTACTGG
AGGGAGGGTTTGGGGCCGCGTCACGTACGGTACTCGTACAGCAGTAAGTA
CGACGTGTCTTTTTTTTGTAGTTTTTTTTTCCTTTTTTTTATCTGCAAAT
TTCAAGTTTCGATTTATTTTTCTCTTTTTTTTTGTAGTCCGCGATTCTGA
GGGGCGTGGGGGGGGAAGGTATACTGGCGTAAAAAAAACGTCCATCAATT
GTGGGCGCGAGCTTTTGAGCCTAACTGTTCGCGGGACCTCAATCAAGTAA
AGAATGGCGGCTGGTTTTATCAAAATATTTTAAAATCGCGTTGTGTGTGT
GTGTGTGTGTGTTTTTTTTTCATATTCTATCATGTATATCCCCGTCGAGG
ATACAATACGGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7938:4694..5505+

>mRNA_M-pyrifera_M_contig7938.18638.1 ID=mRNA_M-pyrifera_M_contig7938.18638.1|Name=mRNA_M-pyrifera_M_contig7938.18638.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=834bp|location=Sequence derived from alignment at M-pyrifera_M_contig7938:4694..5505+ (Macrocystis pyrifera P11B4 male)
ATGACGACTTTTTTCTTCGCTTCGAGGCGCTTTCTCTGTTATAGGAGGAA
GAAAGCGGTGGATATTTCTTTCGTTTTTACGAGCGTTTCCTCTTTGTTCG
GAGGAAAGAGTGACTCGGATAAATTGCAAAGAATTTTCTTTCGCTTCTTG
ACCGTTTCTTTTACTGGAGGGAGGGTTTGGGGCCGCGTCACGTACGGTAC
TCGTACAGCAGTAAGTACGACGTGTCTTTTTTTTGTAGTTTTTTTTTCCT
TTTTTTTATCTGCAAATTTCAAGTTTCGATTTATTTTTCTCTTTTTTTTT
GTAGTCCGCGATTCTGAGGGGCGTGGGGGGGGAAGGTATACTGGCGTAAA
AAAAACGTCCATCAATTGTGGGCGCGAGCTTTTGAGCCTAACTGTTCGCG
GGACCTCAATCAAGTAAATGACGACTTTTTTCTTCGCTTCGAGGCGCTTT
CTCTGTTATAGGAGGAAGAAAGCGGTGGATATTTCTTTCGTTTTTACGAG
CGTTTCCTCTTTGTTCGGAGGAAAGAGTGACTCGGATAAATTGCAAAGAA
TTTTCTTTCGCTTCTTGACCGTTTCTTTTACTGGAGGGAGGGTTTGGGGC
CGCGTCACGTACGGTACTCGTACAGCAGTAAGTACGACGTGTCTTTTTTT
TGTAGTTTTTTTTTCCTTTTTTTTATCTGCAAATTTCAAGTTTCGATTTA
TTTTTCTCTTTTTTTTTGTAGTCCGCGATTCTGAGGGGCGTGGGGGGGGA
AGGTATACTGGCGTAAAAAAAACGTCCATCAATTGTGGGCGCGAGCTTTT
GAGCCTAACTGTTCGCGGGACCTCAATCAAGTAA
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