mRNA_M-pyrifera_M_contig79336.18627.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig79336.18627.1
Unique NamemRNA_M-pyrifera_M_contig79336.18627.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig79336.18627.1 vs. uniprot
Match: A0A0F9L5Y9_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=A0A0F9L5Y9_9ZZZZ)

HSP 1 Score: 67.0 bits (162), Expect = 9.810e-11
Identity = 47/99 (47.47%), Postives = 54/99 (54.55%), Query Frame = 1 
Query:   10 GSGTYSYSWTTAMTIATGDAVIDQFIGSLN-GPVIANSLSITDGTQTVTDDGAGNLVGDIDGGGTNTINYTTGAYDVTFTAPPAALSTITASNIVDEDA 303
            G   YS       +  TG+     F  +L+  PVI  S  ITDGTQ VTDDG G L+GDI G GTNTI+Y TGA DV F   PA    ITA    D +A
Sbjct:  127 GDSAYSSDDVKEESAGTGNGAATNFTPTLDFSPVIPGSFEITDGTQIVTDDGNGALIGDI-GAGTNTIDYVTGAVDVDFAVAPANGLAITADYRFDNEA 224
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BLAST of mRNA_M-pyrifera_M_contig79336.18627.1 vs. uniprot
Match: A0A6M3KB17_9ZZZZ (Uncharacterized protein n=3 Tax=viral metagenome TaxID=1070528 RepID=A0A6M3KB17_9ZZZZ)

HSP 1 Score: 61.6 bits (148), Expect = 8.090e-9
Identity = 36/73 (49.32%), Postives = 49/73 (67.12%), Query Frame = 1 
Query:   52 IATGDAVIDQFIGSL-NGPVIANSLSIT----DGTQTVTDDGAGNLVGDIDGGGTNTINYTTGAYDVTFTAPP 255
            +A GD+ + Q+ GS+ N P+  +S++IT      T+T+TDDGAG L+GD D   T TINYTTGAYD T +  P
Sbjct:  158 LAVGDSTVIQYTGSITNIPIEESSITITYTSGAATKTITDDGAGLLIGDSDSSTTRTINYTTGAYDFTCSDAP 230
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BLAST of mRNA_M-pyrifera_M_contig79336.18627.1 vs. uniprot
Match: A0A401FZY1_9DELT (Uncharacterized protein n=1 Tax=Desulfonema ishimotonii TaxID=45657 RepID=A0A401FZY1_9DELT)

HSP 1 Score: 59.3 bits (142), Expect = 1.770e-8
Identity = 38/86 (44.19%), Postives = 47/86 (54.65%), Query Frame = 1 
Query:   22 YSYSWTTAMTIATGDAVIDQFIGSLNGPVIANSLSITDGTQTVTDDGAGNLVGDIDGGGTNTINYTTGAYDVTFTAPPAALSTITA 279
            Y Y     +  ATGD     F  SL   +   S+S+TD T+T +DDG G L GD   GGT   +Y TGA  +TFTA PA+   ITA
Sbjct:   53 YPYDTEETVAAATGDGTAKTFSLSLGEDLTPGSVSVTDDTETFSDDGVGVLTGDA--GGTGRADYRTGAATITFTAAPASEQAITA 136
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BLAST of mRNA_M-pyrifera_M_contig79336.18627.1 vs. uniprot
Match: A0A3M1ZRW3_9CHLR (Phage tail sheath family protein (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3M1ZRW3_9CHLR)

HSP 1 Score: 57.4 bits (137), Expect = 2.510e-7
Identity = 27/38 (71.05%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:  142 QTVTDDGAGNLVGDIDGGGTNTINYTTGAYDVTFTAPP 255
            Q VTDDG GNL+GD+D  G NTI+Y TGAYDVTF A P
Sbjct:  338 QVVTDDGLGNLIGDVDAAGNNTIDYATGAYDVTFAAAP 375
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BLAST of mRNA_M-pyrifera_M_contig79336.18627.1 vs. uniprot
Match: UPI0004A77099 (hypothetical protein n=1 Tax=Desulfohalovibrio reitneri TaxID=1307759 RepID=UPI0004A77099)

HSP 1 Score: 55.8 bits (133), Expect = 3.530e-7
Identity = 38/92 (41.30%), Postives = 50/92 (54.35%), Query Frame = 1 
Query:   43 AMTIATGDAVIDQFIGSL-NGPVIANSLSITDGTQTVTDDGAGNLVGDIDGGGTNTINYTTGAYDVTFTAPPAALSTITASNIVDEDATLSA 315
            A +I TGD    +F  +L  GPV   S+ ++DG +T+ DDG G L GD   GG+ TINY TG   V F A PA  + + A  +   D  L A
Sbjct:   60 AESIGTGDNSATEFSSTLAEGPVHPRSVVVSDGVETLADDGHGKLWGD--SGGSGTINYGTGEIQVAFNAAPATDADVAADYVTSVDGVLDA 149
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BLAST of mRNA_M-pyrifera_M_contig79336.18627.1 vs. uniprot
Match: A0A7C0U634_9AQUI (Uncharacterized protein n=1 Tax=Thermosulfidibacter takaii TaxID=412593 RepID=A0A7C0U634_9AQUI)

HSP 1 Score: 54.3 bits (129), Expect = 1.260e-6
Identity = 35/82 (42.68%), Postives = 49/82 (59.76%), Query Frame = 1 
Query:   40 TAMTIATGDAVIDQFIGSLNG-PVIANSLSITDGTQTVTDDGAGNLVGDIDGGGTNTINYTTGAYDVTFTAPPAALSTITAS 282
            T+  I TGD     F GSL+  P+   ++ +TDGTQT+ DDG G L GD    G+ T+NY T   + +FTA P   +T++AS
Sbjct:   58 TSKEIGTGDGSNKDFSGSLDAKPLQPGTVVVTDGTQTLCDDGCGRLYGD----GSGTVNYETAKVNASFTAAPDNGATVSAS 135
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BLAST of mRNA_M-pyrifera_M_contig79336.18627.1 vs. uniprot
Match: A0A0F9WNK2_9ZZZZ (Uncharacterized protein n=1 Tax=marine sediment metagenome TaxID=412755 RepID=A0A0F9WNK2_9ZZZZ)

HSP 1 Score: 52.4 bits (124), Expect = 1.430e-5
Identity = 36/71 (50.70%), Postives = 43/71 (60.56%), Query Frame = 1 
Query:   67 AVIDQFIGSLNG----------PVIANSLSITD--GTQTVTDDGAGNLVGDIDGGGTNTINYTTGAYDVTF 243
            AVI + IG+             P+ A +L+I D  G+QTVTDDG GNL GD    GT TINYTTGA+ VTF
Sbjct:  311 AVIGEVIGASGSAAYAGTLVEFPLQAGTLTIEDVGGSQTVTDDGQGNLTGD----GTGTINYTTGAFAVTF 377
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig79336.18627.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A0F9L5Y9_9ZZZZ9.810e-1147.47Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
A0A6M3KB17_9ZZZZ8.090e-949.32Uncharacterized protein n=3 Tax=viral metagenome T... [more]
A0A401FZY1_9DELT1.770e-844.19Uncharacterized protein n=1 Tax=Desulfonema ishimo... [more]
A0A3M1ZRW3_9CHLR2.510e-771.05Phage tail sheath family protein (Fragment) n=1 Ta... [more]
UPI0004A770993.530e-741.30hypothetical protein n=1 Tax=Desulfohalovibrio rei... [more]
A0A7C0U634_9AQUI1.260e-642.68Uncharacterized protein n=1 Tax=Thermosulfidibacte... [more]
A0A0F9WNK2_9ZZZZ1.430e-550.70Uncharacterized protein n=1 Tax=marine sediment me... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig79336contigM-pyrifera_M_contig79336:42..362 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size321
Cds size321
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816696.7691896-CDS-M-pyrifera_M_contig79336:41..3621622816696.7691896-CDS-M-pyrifera_M_contig79336:41..362Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79336 42..362 -
1692278125.3444493-CDS-M-pyrifera_M_contig79336:41..3621692278125.3444493-CDS-M-pyrifera_M_contig79336:41..362Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79336 42..362 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig79336.18627.1prot_M-pyrifera_M_contig79336.18627.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig79336 42..362 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig79336.18627.1

>prot_M-pyrifera_M_contig79336.18627.1 ID=prot_M-pyrifera_M_contig79336.18627.1|Name=mRNA_M-pyrifera_M_contig79336.18627.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=107bp
VTGGSGTYSYSWTTAMTIATGDAVIDQFIGSLNGPVIANSLSITDGTQTV
TDDGAGNLVGDIDGGGTNTINYTTGAYDVTFTAPPAALSTITASNIVDED
ATLSAVA
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mRNA from alignment at M-pyrifera_M_contig79336:42..362-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig79336.18627.1 ID=mRNA_M-pyrifera_M_contig79336.18627.1|Name=mRNA_M-pyrifera_M_contig79336.18627.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=321bp|location=Sequence derived from alignment at M-pyrifera_M_contig79336:42..362- (Macrocystis pyrifera P11B4 male)
GTAACAGGTGGATCAGGAACATACTCCTACTCATGGACCACTGCAATGAC
CATCGCTACAGGAGATGCAGTCATTGACCAGTTCATCGGTAGCCTGAATG
GTCCTGTCATTGCCAATTCATTATCCATCACGGATGGAACCCAAACCGTA
ACAGATGATGGTGCTGGAAACCTTGTCGGTGATATCGACGGAGGTGGGAC
AAACACCATCAACTACACGACAGGAGCATACGATGTGACATTCACTGCCC
CTCCTGCGGCCCTATCAACAATCACAGCTTCAAACATCGTCGATGAAGAT
GCAACACTTAGTGCTGTTGCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig79336:42..362-

>mRNA_M-pyrifera_M_contig79336.18627.1 ID=mRNA_M-pyrifera_M_contig79336.18627.1|Name=mRNA_M-pyrifera_M_contig79336.18627.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=642bp|location=Sequence derived from alignment at M-pyrifera_M_contig79336:42..362- (Macrocystis pyrifera P11B4 male)
GTAACAGGTGGATCAGGAACATACTCCTACTCATGGACCACTGCAATGAC
CATCGCTACAGGAGATGCAGTCATTGACCAGTTCATCGGTAGCCTGAATG
GTCCTGTCATTGCCAATTCATTATCCATCACGGATGGAACCCAAACCGTA
ACAGATGATGGTGCTGGAAACCTTGTCGGTGATATCGACGGAGGTGGGAC
AAACACCATCAACTACACGACAGGAGCATACGATGTGACATTCACTGCCC
CTCCTGCGGCCCTATCAACAATCACAGCTTCAAACATCGTCGATGAAGAT
GCAACACTTAGTGCTGTTGCAGTAACAGGTGGATCAGGAACATACTCCTA
CTCATGGACCACTGCAATGACCATCGCTACAGGAGATGCAGTCATTGACC
AGTTCATCGGTAGCCTGAATGGTCCTGTCATTGCCAATTCATTATCCATC
ACGGATGGAACCCAAACCGTAACAGATGATGGTGCTGGAAACCTTGTCGG
TGATATCGACGGAGGTGGGACAAACACCATCAACTACACGACAGGAGCAT
ACGATGTGACATTCACTGCCCCTCCTGCGGCCCTATCAACAATCACAGCT
TCAAACATCGTCGATGAAGATGCAACACTTAGTGCTGTTGCA
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