mRNA_M-pyrifera_M_contig79265.18605.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig79265.18605.1
Unique NamemRNA_M-pyrifera_M_contig79265.18605.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig79265.18605.1 vs. uniprot
Match: Q54BY9_DICDI (Uncharacterized protein n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q54BY9_DICDI)

HSP 1 Score: 54.3 bits (129), Expect = 1.530e-6
Identity = 27/85 (31.76%), Postives = 51/85 (60.00%), Query Frame = 1 
Query:   10 VRKRVATELLETEKNYVKNMEQVIQLLVGPVLNASKQGMRIMKDSEFFSCFANLPQLTAHHASFCAKLTERIEENWTDEVTIGDI 264
            +R+R+A ELL TEK+YV N++ +I + + P++N +    R++  SE    F N  +L   ++     +  +++ NW+ + TIGD+
Sbjct:  286 MRRRIAQELLSTEKSYVYNLKLIIDIFIRPLINFNSIEQRVLSVSEISGVFGNWERLYKINSDLLVLIQCKLD-NWSIDQTIGDL 369
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BLAST of mRNA_M-pyrifera_M_contig79265.18605.1 vs. uniprot
Match: UPI002025D51D (LOW QUALITY PROTEIN: FYVE, RhoGEF and PH domain-containing protein 2 n=1 Tax=Sphaerodactylus townsendi TaxID=933632 RepID=UPI002025D51D)

HSP 1 Score: 50.4 bits (119), Expect = 3.490e-5
Identity = 29/88 (32.95%), Postives = 47/88 (53.41%), Query Frame = 1 
Query:    1 QNTVRKRVATELLETEKNYVKNMEQVIQLLVGPVLNASKQGMRIMKDSEFFSCFANLPQLTAHHASFCAKLTERIEENWTDEVTIGDI 264
            Q++  K++A ELLETEK YV  +  + Q+    ++NA++ G  I +D      F+N+  +   H+ F     ++  ENW     IGDI
Sbjct:  110 QDSEEKKIALELLETEKAYVGRLHLLDQVFFSELMNAARNGKTIPEDVVKM-IFSNISSIYQFHSQFFLPELQKRMENWDSNSRIGDI 196
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BLAST of mRNA_M-pyrifera_M_contig79265.18605.1 vs. uniprot
Match: A0A1X7UJQ9_AMPQE (DH domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7UJQ9_AMPQE)

HSP 1 Score: 50.1 bits (118), Expect = 3.910e-5
Identity = 30/88 (34.09%), Postives = 45/88 (51.14%), Query Frame = 1 
Query:    1 QNTVRKRVATELLETEKNYVKNMEQVIQLLVGPVLNASKQGMRIMKDSEFFSCFANLPQLTAHHASFCAKLTERIEENWTDEVTIGDI 264
            Q+T R  +  ELL TEKN+VK + + ++ L  P     ++G +++ +    S F N+P +   H      L ERI  NW     IGDI
Sbjct:  101 QDTARYHIVKELLTTEKNFVKILNEFMKPLATP----GQRGGQLLTNENVKSIFGNIPDILRVHTDIMNGLEERIN-NWESNTCIGDI 183
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig79265.18605.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Q54BY9_DICDI1.530e-631.76Uncharacterized protein n=1 Tax=Dictyostelium disc... [more]
UPI002025D51D3.490e-532.95LOW QUALITY PROTEIN: FYVE, RhoGEF and PH domain-co... [more]
A0A1X7UJQ9_AMPQE3.910e-534.09DH domain-containing protein n=1 Tax=Amphimedon qu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig79265contigM-pyrifera_M_contig79265:6..269 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size264
Cds size264
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816695.5821507-CDS-M-pyrifera_M_contig79265:5..2691622816695.5821507-CDS-M-pyrifera_M_contig79265:5..269Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79265 6..269 -
1692278124.686021-CDS-M-pyrifera_M_contig79265:5..2691692278124.686021-CDS-M-pyrifera_M_contig79265:5..269Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79265 6..269 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig79265.18605.1prot_M-pyrifera_M_contig79265.18605.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig79265 6..269 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig79265.18605.1

>prot_M-pyrifera_M_contig79265.18605.1 ID=prot_M-pyrifera_M_contig79265.18605.1|Name=mRNA_M-pyrifera_M_contig79265.18605.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=88bp
QNTVRKRVATELLETEKNYVKNMEQVIQLLVGPVLNASKQGMRIMKDSEF
FSCFANLPQLTAHHASFCAKLTERIEENWTDEVTIGDI
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mRNA from alignment at M-pyrifera_M_contig79265:6..269-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig79265.18605.1 ID=mRNA_M-pyrifera_M_contig79265.18605.1|Name=mRNA_M-pyrifera_M_contig79265.18605.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=264bp|location=Sequence derived from alignment at M-pyrifera_M_contig79265:6..269- (Macrocystis pyrifera P11B4 male)
CAGAACACTGTGCGCAAGAGGGTTGCGACCGAGCTGCTCGAGACAGAGAA
GAACTACGTGAAGAACATGGAGCAGGTGATACAGCTGCTGGTGGGCCCCG
TGCTCAATGCCAGCAAGCAGGGCATGCGCATCATGAAGGACTCTGAGTTC
TTCAGCTGCTTTGCAAACCTCCCCCAGCTCACTGCCCACCACGCCTCCTT
CTGTGCAAAGCTCACCGAACGCATTGAAGAGAACTGGACCGACGAAGTCA
CCATAGGTGACATC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig79265:6..269-

>mRNA_M-pyrifera_M_contig79265.18605.1 ID=mRNA_M-pyrifera_M_contig79265.18605.1|Name=mRNA_M-pyrifera_M_contig79265.18605.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=528bp|location=Sequence derived from alignment at M-pyrifera_M_contig79265:6..269- (Macrocystis pyrifera P11B4 male)
CAGAACACTGTGCGCAAGAGGGTTGCGACCGAGCTGCTCGAGACAGAGAA
GAACTACGTGAAGAACATGGAGCAGGTGATACAGCTGCTGGTGGGCCCCG
TGCTCAATGCCAGCAAGCAGGGCATGCGCATCATGAAGGACTCTGAGTTC
TTCAGCTGCTTTGCAAACCTCCCCCAGCTCACTGCCCACCACGCCTCCTT
CTGTGCAAAGCTCACCGAACGCATTGAAGAGAACTGGACCGACGAAGTCA
CCATAGGTGACATCCAGAACACTGTGCGCAAGAGGGTTGCGACCGAGCTG
CTCGAGACAGAGAAGAACTACGTGAAGAACATGGAGCAGGTGATACAGCT
GCTGGTGGGCCCCGTGCTCAATGCCAGCAAGCAGGGCATGCGCATCATGA
AGGACTCTGAGTTCTTCAGCTGCTTTGCAAACCTCCCCCAGCTCACTGCC
CACCACGCCTCCTTCTGTGCAAAGCTCACCGAACGCATTGAAGAGAACTG
GACCGACGAAGTCACCATAGGTGACATC
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