mRNA_M-pyrifera_M_contig79081.18573.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig79081.18573.1
Unique NamemRNA_M-pyrifera_M_contig79081.18573.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig79081.18573.1 vs. uniprot
Match: A0A7Z9PVR8_9BACT (Uncharacterized protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Z9PVR8_9BACT)

HSP 1 Score: 331 bits (849), Expect = 3.140e-112
Identity = 180/236 (76.27%), Postives = 196/236 (83.05%), Query Frame = 1 
Query:   37 SIVSADVVTYSGPRDATRDQFNIDSDNLALLENFDSFVGETIVGDLPANGARFAPEYADGSVAPLPVTQPFAGAPSGSQWMKNFGNGRPPSSAWVIRPDNENDLIYAFGQVNAQGDWVRIDGFDADDNLIVSVDAQPIVAGCFAGFIVREGVSKVVVTPLGNFDGLNGMDDVQVATTPIDLCDVDLNCDGDLDIFDVIEFIEAFNAEDPRADFLPNGVXXXXXXXXXXXXFEEGCP 744
            S+V ADVVTYSGP  ATRDQFN DSD LALLE+F+SF G   VGD+P NGARFA EYADGS APLP+ Q    APSGS+WM+NFGNGRP  +AWVIRPD+ +DLIYAFGQVNAQGDWVRI+GFDADDNLIVSVDAQPI+  CFAGFIVREGVSKVVVTPLGN D  NGMDDVQV+T  I+LCDVDLNCDG+LD FDV  FI A+NA DPRADF     XXXXXXXXXXXX   GCP
Sbjct:   15 SVVCADVVTYSGPLTATRDQFNADSDGLALLEDFESFSGGQAVGDMPGNGARFAEEYADGSSAPLPIIQATFAAPSGSRWMQNFGNGRPFGAAWVIRPDDPDDLIYAFGQVNAQGDWVRIEGFDADDNLIVSVDAQPIL--CFAGFIVREGVSKVVVTPLGNGDFANGMDDVQVSTQEINLCDVDLNCDGNLDFFDVSAFIAAYNAMDPRADFTGXXXXXXXXXXXXXXXXXAGCP 248
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BLAST of mRNA_M-pyrifera_M_contig79081.18573.1 vs. uniprot
Match: A0A3D4UN49_9BACT (Uncharacterized protein n=2 Tax=Phycisphaerae TaxID=666505 RepID=A0A3D4UN49_9BACT)

HSP 1 Score: 318 bits (814), Expect = 7.080e-107
Identity = 168/240 (70.00%), Postives = 190/240 (79.17%), Query Frame = 1 
Query:   25 LLLSSIVSADVVTYSGPRDATRDQFNIDSDNLALLENFDSFVGETIVGDLPANGARFAPEYADGSVAPLPVTQPFAGAPSGSQWMKNFGNGRPPSSAWVIRPDNENDLIYAFGQVNAQGDWVRIDGFDADDNLIVSVDAQPIVAGCFAGFIVREGVSKVVVTPLGNFDGLNGMDDVQVATTPIDLCDVDLNCDGDLDIFDVIEFIEAFNAEDPRADFLPNGVXXXXXXXXXXXXFEEGCP 744
            + LS +  ADVVTYSGP +ATR QFN  +   A LE+F++F     VGD+P NGARFAPEY DG  APLP+ Q  A APSG +W+ NFGNGRP  SAWVIRPDN  DLIYAFGQVNAQGDWVRI+GFDADD L+VSVDAQPI+AGCFAGFIV +GVSKVVVTP+GNFDG NGMDDVQV+T+PI+ C VDLNCDG +D FD+ EFI A+ A DPRADF     XXXXXXXXXXXX   GCP
Sbjct:   11 MCLSPLAVADVVTYSGPLEATRSQFNSYTRGAASLEDFETFADGQEVGDMPGNGARFAPEYPDGLAAPLPLIQASANAPSGDRWLANFGNGRPAFSAWVIRPDNAGDLIYAFGQVNAQGDWVRIEGFDADDQLVVSVDAQPILAGCFAGFIVPDGVSKVVVTPVGNFDGFNGMDDVQVSTSPIEPCVVDLNCDGFIDFFDISEFIAAYTAMDPRADFTGXXXXXXXXXXXXXXXXXAGCP 250
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BLAST of mRNA_M-pyrifera_M_contig79081.18573.1 vs. uniprot
Match: UPI001AD31769 (Uncharacterized protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=UPI001AD31769)

HSP 1 Score: 179 bits (454), Expect = 6.730e-53
Identity = 100/189 (52.91%), Postives = 120/189 (63.49%), Query Frame = 1 
Query:    4 KTTLLCTLLLSSIVSADVVTYSGPRDATRDQFNIDSDNLALLENFDSFVGETIVGDLPANGARFAPEYADGSVAPLPVTQPFAGAPSGSQWMKNFGNGRPPSSAWVIRPDNENDLIYAFGQVNAQGDWVRIDGFDADDNLIVSVDAQPIVAGCFAGFIVREGVSKVVVTPLGNFDGLNGMDDVQVATTP 570
            +T  L    L+   SA  VT+SGP   TR  F   +      E F+SF    IVGD+P   A F+PEYADGS APLPV    +   S  +W+ NFGNGRP  S+WVIRPD   + IYAFGQVN+QGDWVRI  +DA + LI  VDA PI + CFAGF+    ++KVVVTPLGN DG NGMDDV V+  P
Sbjct:    4 RTGALMVCALAGQASASFVTFSGPLGTTRPAFEAAAGGSVPRETFESFANGAIVGDMPNVQAFFSPEYADGSPAPLPVVLNNSPVTS-PRWIGNFGNGRPFWSSWVIRPD-AGESIYAFGQVNSQGDWVRILAYDASNTLIGQVDASPI-SHCFAGFVSTTPIAKVVVTPLGNADGANGMDDVSVSIVP 189
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BLAST of mRNA_M-pyrifera_M_contig79081.18573.1 vs. uniprot
Match: A0A5C5W329_9BACT (Uncharacterized protein n=1 Tax=Phycisphaerae bacterium RAS1 TaxID=2528034 RepID=A0A5C5W329_9BACT)

HSP 1 Score: 72.8 bits (177), Expect = 7.240e-12
Identity = 54/157 (34.39%), Postives = 74/157 (47.13%), Query Frame = 1 
Query:  127 LENFDSFVGETIVGDLPANGARFAPEYADGSVAPLPVTQPFAGAPSGSQWMKNFGNGRPPSS----AWVIRPDNENDLIYAFG-----QVNAQGDWVRIDGFDADDNLIVSVDAQPIVAGCFAGFIVREGVSKVVVTPLGNFDGLNGMDDVQVATTP 570
            LE+FDS+     V  LP     F          PLP  Q +  +   ++   N    RPP S     ++IRP+    LI A G        A  D +R+  FD +  ++ SVD  P     FAGF+V  G S+V ++ LGN DG NG DD+Q+ T P
Sbjct:   48 LEDFDSYSDGANVASLPGLHVSFDD--------PLPFAQAYEASHIFARSEPNQLANRPPDSDVNNPYIIRPE-PGLLISALGLWETSSTPAGIDQLRLTAFDGNGLILGSVDT-PFAGVAFAGFVVSSGASRVEISVLGNADGRNGFDDLQIGTVP 194
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig79081.18573.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7Z9PVR8_9BACT3.140e-11276.27Uncharacterized protein n=1 Tax=Phycisphaerales ba... [more]
A0A3D4UN49_9BACT7.080e-10770.00Uncharacterized protein n=2 Tax=Phycisphaerae TaxI... [more]
UPI001AD317696.730e-5352.91Uncharacterized protein n=1 Tax=Phycisphaerales ba... [more]
A0A5C5W329_9BACT7.240e-1234.39Uncharacterized protein n=1 Tax=Phycisphaerae bact... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig79081contigM-pyrifera_M_contig79081:209..958 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size750
Cds size750
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816693.960656-CDS-M-pyrifera_M_contig79081:208..9581622816693.960656-CDS-M-pyrifera_M_contig79081:208..958Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79081 209..958 -
1692278123.7038646-CDS-M-pyrifera_M_contig79081:208..9581692278123.7038646-CDS-M-pyrifera_M_contig79081:208..958Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79081 209..958 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig79081.18573.1prot_M-pyrifera_M_contig79081.18573.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig79081 209..958 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig79081.18573.1

>prot_M-pyrifera_M_contig79081.18573.1 ID=prot_M-pyrifera_M_contig79081.18573.1|Name=mRNA_M-pyrifera_M_contig79081.18573.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=250bp
MKTTLLCTLLLSSIVSADVVTYSGPRDATRDQFNIDSDNLALLENFDSFV
GETIVGDLPANGARFAPEYADGSVAPLPVTQPFAGAPSGSQWMKNFGNGR
PPSSAWVIRPDNENDLIYAFGQVNAQGDWVRIDGFDADDNLIVSVDAQPI
VAGCFAGFIVREGVSKVVVTPLGNFDGLNGMDDVQVATTPIDLCDVDLNC
DGDLDIFDVIEFIEAFNAEDPRADFLPNGVFDIFDVIEYIRQFEEGCPS*
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mRNA from alignment at M-pyrifera_M_contig79081:209..958-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig79081.18573.1 ID=mRNA_M-pyrifera_M_contig79081.18573.1|Name=mRNA_M-pyrifera_M_contig79081.18573.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=750bp|location=Sequence derived from alignment at M-pyrifera_M_contig79081:209..958- (Macrocystis pyrifera P11B4 male)
ATGAAAACAACTTTGCTATGTACTCTTCTGCTGTCGTCGATCGTCTCAGC
AGATGTTGTCACCTACTCTGGACCGCGCGATGCGACGCGCGATCAGTTCA
ATATCGATTCAGACAATCTCGCATTGCTCGAGAACTTCGATTCGTTTGTC
GGCGAAACGATCGTCGGCGATCTCCCAGCAAACGGCGCTCGCTTCGCTCC
CGAGTACGCAGATGGATCTGTTGCGCCGCTTCCTGTTACTCAGCCGTTCG
CAGGTGCGCCTTCGGGATCTCAATGGATGAAGAACTTCGGGAACGGGAGA
CCCCCTAGCTCTGCATGGGTCATCCGTCCTGACAACGAGAATGATCTAAT
CTACGCGTTCGGACAAGTCAACGCACAGGGGGACTGGGTCCGGATCGATG
GATTTGATGCAGACGACAATCTGATCGTCTCTGTCGACGCGCAACCCATC
GTCGCGGGATGCTTCGCGGGATTCATCGTGCGTGAAGGCGTGAGCAAAGT
CGTCGTCACGCCGCTGGGCAACTTCGACGGACTCAACGGCATGGACGATG
TCCAAGTCGCGACGACACCCATCGATCTGTGCGATGTTGATCTGAACTGC
GATGGAGATCTCGATATCTTCGATGTCATCGAGTTCATCGAAGCGTTCAA
CGCTGAGGATCCGCGTGCCGATTTCCTCCCCAACGGCGTGTTCGATATCT
TCGATGTGATTGAGTACATCCGACAGTTCGAAGAAGGGTGCCCCTCATAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig79081:209..958-

>mRNA_M-pyrifera_M_contig79081.18573.1 ID=mRNA_M-pyrifera_M_contig79081.18573.1|Name=mRNA_M-pyrifera_M_contig79081.18573.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1500bp|location=Sequence derived from alignment at M-pyrifera_M_contig79081:209..958- (Macrocystis pyrifera P11B4 male)
ATGAAAACAACTTTGCTATGTACTCTTCTGCTGTCGTCGATCGTCTCAGC
AGATGTTGTCACCTACTCTGGACCGCGCGATGCGACGCGCGATCAGTTCA
ATATCGATTCAGACAATCTCGCATTGCTCGAGAACTTCGATTCGTTTGTC
GGCGAAACGATCGTCGGCGATCTCCCAGCAAACGGCGCTCGCTTCGCTCC
CGAGTACGCAGATGGATCTGTTGCGCCGCTTCCTGTTACTCAGCCGTTCG
CAGGTGCGCCTTCGGGATCTCAATGGATGAAGAACTTCGGGAACGGGAGA
CCCCCTAGCTCTGCATGGGTCATCCGTCCTGACAACGAGAATGATCTAAT
CTACGCGTTCGGACAAGTCAACGCACAGGGGGACTGGGTCCGGATCGATG
GATTTGATGCAGACGACAATCTGATCGTCTCTGTCGACGCGCAACCCATC
GTCGCGGGATGCTTCGCGGGATTCATCGTGCGTGAAGGCGTGAGCAAAGT
CGTCGTCACGCCGCTGGGCAACTTCGACGGACTCAACGGCATGGACGATG
TCCAAGTCGCGACGACACCCATCGATCTGTGCGATGTTGATCTGAACTGC
GATGGAGATCTCGATATCTTCGATGTCATCGAGTTCATCGAAGCGTTCAA
CGCTGAGGATCCGCGTGCCGATTTCCTCCCCAACGGCGTGTTCGATATCT
TCGATGTGATTGAGTACATCCGACAGTTCGAAGAAGGGTGCCCCTCATAA
ATGAAAACAACTTTGCTATGTACTCTTCTGCTGTCGTCGATCGTCTCAGC
AGATGTTGTCACCTACTCTGGACCGCGCGATGCGACGCGCGATCAGTTCA
ATATCGATTCAGACAATCTCGCATTGCTCGAGAACTTCGATTCGTTTGTC
GGCGAAACGATCGTCGGCGATCTCCCAGCAAACGGCGCTCGCTTCGCTCC
CGAGTACGCAGATGGATCTGTTGCGCCGCTTCCTGTTACTCAGCCGTTCG
CAGGTGCGCCTTCGGGATCTCAATGGATGAAGAACTTCGGGAACGGGAGA
CCCCCTAGCTCTGCATGGGTCATCCGTCCTGACAACGAGAATGATCTAAT
CTACGCGTTCGGACAAGTCAACGCACAGGGGGACTGGGTCCGGATCGATG
GATTTGATGCAGACGACAATCTGATCGTCTCTGTCGACGCGCAACCCATC
GTCGCGGGATGCTTCGCGGGATTCATCGTGCGTGAAGGCGTGAGCAAAGT
CGTCGTCACGCCGCTGGGCAACTTCGACGGACTCAACGGCATGGACGATG
TCCAAGTCGCGACGACACCCATCGATCTGTGCGATGTTGATCTGAACTGC
GATGGAGATCTCGATATCTTCGATGTCATCGAGTTCATCGAAGCGTTCAA
CGCTGAGGATCCGCGTGCCGATTTCCTCCCCAACGGCGTGTTCGATATCT
TCGATGTGATTGAGTACATCCGACAGTTCGAAGAAGGGTGCCCCTCATAA
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