mRNA_M-pyrifera_M_contig7858.18461.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7858.18461.1
Unique NamemRNA_M-pyrifera_M_contig7858.18461.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig7858.18461.1 vs. uniprot
Match: D8LBB5_ECTSI (Essential abundant protein involved in regulation of transcription n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBB5_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 2.140e-5
Identity = 22/25 (88.00%), Postives = 25/25 (100.00%), Query Frame = 3 
Query:   51 LELWSADEDYAYLASDRLADSVARE 125
            +ELWSADEDYAYLA++RLADSVARE
Sbjct: 2307 VELWSADEDYAYLAAERLADSVARE 2331
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7858.18461.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LBB5_ECTSI2.140e-588.00Essential abundant protein involved in regulation ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7858contigM-pyrifera_M_contig7858:5635..5961 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size327
Cds size327
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816688.0754511-CDS-M-pyrifera_M_contig7858:5634..59611622816688.0754511-CDS-M-pyrifera_M_contig7858:5634..5961Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7858 5635..5961 +
1692278120.4149234-CDS-M-pyrifera_M_contig7858:5634..59611692278120.4149234-CDS-M-pyrifera_M_contig7858:5634..5961Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7858 5635..5961 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7858.18461.1prot_M-pyrifera_M_contig7858.18461.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7858 5635..5961 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7858.18461.1

>prot_M-pyrifera_M_contig7858.18461.1 ID=prot_M-pyrifera_M_contig7858.18461.1|Name=mRNA_M-pyrifera_M_contig7858.18461.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=109bp
MGPADGPGVPQALARTSLSSGVLMRTMRTLRPIVWRTLWRGSRKLCRLLG
ACSEKYVSCESVFFNVTFTFQQQQFLGCSTFGGVLDQKWSLVCLPSSTLV
IDFVFFRD*
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mRNA from alignment at M-pyrifera_M_contig7858:5635..5961+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7858.18461.1 ID=mRNA_M-pyrifera_M_contig7858.18461.1|Name=mRNA_M-pyrifera_M_contig7858.18461.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=327bp|location=Sequence derived from alignment at M-pyrifera_M_contig7858:5635..5961+ (Macrocystis pyrifera P11B4 male)
ATGGGTCCTGCGGACGGGCCGGGGGTGCCACAGGCGCTGGCGAGAACAAG
CTTGAGCTCTGGAGTGCTGATGAGGACTATGCGTACCTTGCGTCCGATCG
TCTGGCGGACTCTGTGGCGCGGGAGTAGGAAGCTATGTAGACTCCTTGGA
GCGTGCTCTGAGAAATATGTTTCCTGTGAGAGTGTTTTTTTCAACGTCAC
TTTTACTTTCCAGCAGCAGCAATTCTTAGGGTGTTCCACGTTCGGCGGCG
TTTTGGACCAAAAGTGGTCACTGGTGTGTCTTCCCTCGTCCACTCTGGTA
ATTGACTTCGTTTTTTTCCGCGATTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7858:5635..5961+

>mRNA_M-pyrifera_M_contig7858.18461.1 ID=mRNA_M-pyrifera_M_contig7858.18461.1|Name=mRNA_M-pyrifera_M_contig7858.18461.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=654bp|location=Sequence derived from alignment at M-pyrifera_M_contig7858:5635..5961+ (Macrocystis pyrifera P11B4 male)
ATGGGTCCTGCGGACGGGCCGGGGGTGCCACAGGCGCTGGCGAGAACAAG
CTTGAGCTCTGGAGTGCTGATGAGGACTATGCGTACCTTGCGTCCGATCG
TCTGGCGGACTCTGTGGCGCGGGAGTAGGAAGCTATGTAGACTCCTTGGA
GCGTGCTCTGAGAAATATGTTTCCTGTGAGAGTGTTTTTTTCAACGTCAC
TTTTACTTTCCAGCAGCAGCAATTCTTAGGGTGTTCCACGTTCGGCGGCG
TTTTGGACCAAAAGTGGTCACTGGTGTGTCTTCCCTCGTCCACTCTGGTA
ATTGACTTCGTTTTTTTCCGCGATTAGATGGGTCCTGCGGACGGGCCGGG
GGTGCCACAGGCGCTGGCGAGAACAAGCTTGAGCTCTGGAGTGCTGATGA
GGACTATGCGTACCTTGCGTCCGATCGTCTGGCGGACTCTGTGGCGCGGG
AGTAGGAAGCTATGTAGACTCCTTGGAGCGTGCTCTGAGAAATATGTTTC
CTGTGAGAGTGTTTTTTTCAACGTCACTTTTACTTTCCAGCAGCAGCAAT
TCTTAGGGTGTTCCACGTTCGGCGGCGTTTTGGACCAAAAGTGGTCACTG
GTGTGTCTTCCCTCGTCCACTCTGGTAATTGACTTCGTTTTTTTCCGCGA
TTAG
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