mRNA_M-pyrifera_M_contig78195.18386.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig78195.18386.1
Unique NamemRNA_M-pyrifera_M_contig78195.18386.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig78195.18386.1 vs. uniprot
Match: A0A660W4Q4_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A660W4Q4_9BACT)

HSP 1 Score: 59.7 bits (143), Expect = 3.920e-9
Identity = 25/65 (38.46%), Postives = 38/65 (58.46%), Query Frame = 1 
Query:  100 DQLLRQRGEPFLWITSSPPLHGRAGEEFRYGVEYRTSETKVQFKIDNAPDGMTVNKDGLITWNIP 294
            ++ L   G  +L++ S PP    AG  F Y +  R+    V FK++ APDGM ++ DGLI W++P
Sbjct:   23 EKALEDSGIDYLFVDSEPPSKAIAGTTFFYSINVRSKRGGVGFKLEGAPDGMRLDGDGLIVWDVP 87
[Close]
BLAST of mRNA_M-pyrifera_M_contig78195.18386.1 vs. uniprot
Match: A0A517X4I6_9PLAN (Uncharacterized protein n=7 Tax=Planctomycetaceae TaxID=126 RepID=A0A517X4I6_9PLAN)

HSP 1 Score: 62.0 bits (149), Expect = 7.520e-9
Identity = 33/96 (34.38%), Postives = 54/96 (56.25%), Query Frame = 1 
Query:   13 AMESRCHFIRAANLFVSVGQTVD---LFHVDIDQLLRQRGEPFLWITSSPPLHGRAGEEFRYGVEYRTSETKVQFKIDNAPDGMTVNKDGLITWNI 291
            + E R  +I  A+L V +  T D   L  V+ID LL + GE +L++TS  P  G+ G  +      + S+ +V + ++  P+GM V+  GL+TW+I
Sbjct: 1255 SFEKRYTYIPTADLLVQIPITNDRLILHQVEIDSLLEESGEDYLYVTSLAPATGKIGTRWECQFSAK-SKQQVSYHLETGPEGMNVSPTGLMTWDI 1349
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig78195.18386.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A660W4Q4_9BACT3.920e-938.46Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A517X4I6_9PLAN7.520e-934.38Uncharacterized protein n=7 Tax=Planctomycetaceae ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig78195contigM-pyrifera_M_contig78195:271..606 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score65.1
Seed ortholog evalue2.3e-08
Seed eggNOG ortholog344747.PM8797T_08294
KEGG koko:K19091
Hectar predicted targeting categoryother localisation
EggNOG free text desc.DNA-templated transcription, initiation
EggNOG OGs2J539@203682,COG1595@1,COG1595@2
COG Functional cat.K
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko02048
Exons1
Model size336
Cds size321
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816683.3852382-UTR-M-pyrifera_M_contig78195:270..2851622816683.3852382-UTR-M-pyrifera_M_contig78195:270..285Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig78195 271..285 +
1692278117.453329-UTR-M-pyrifera_M_contig78195:270..2851692278117.453329-UTR-M-pyrifera_M_contig78195:270..285Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig78195 271..285 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816683.4009116-CDS-M-pyrifera_M_contig78195:285..6061622816683.4009116-CDS-M-pyrifera_M_contig78195:285..606Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78195 286..606 +
1692278117.4718506-CDS-M-pyrifera_M_contig78195:285..6061692278117.4718506-CDS-M-pyrifera_M_contig78195:285..606Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78195 286..606 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig78195.18386.1prot_M-pyrifera_M_contig78195.18386.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig78195 286..606 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig78195.18386.1

>prot_M-pyrifera_M_contig78195.18386.1 ID=prot_M-pyrifera_M_contig78195.18386.1|Name=mRNA_M-pyrifera_M_contig78195.18386.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=107bp
MESRCHFIRAANLFVSVGQTVDLFHVDIDQLLRQRGEPFLWITSSPPLHG
RAGEEFRYGVEYRTSETKVQFKIDNAPDGMTVNKDGLITWNIPRHQPQGF
VDVTVSV
back to top

mRNA from alignment at M-pyrifera_M_contig78195:271..606+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig78195.18386.1 ID=mRNA_M-pyrifera_M_contig78195.18386.1|Name=mRNA_M-pyrifera_M_contig78195.18386.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=336bp|location=Sequence derived from alignment at M-pyrifera_M_contig78195:271..606+ (Macrocystis pyrifera P11B4 male)
AACAGCAACCTCGCCATGGAGAGTCGGTGCCATTTCATCCGAGCGGCCAA
CTTGTTCGTATCAGTTGGACAGACAGTCGACTTATTCCATGTCGATATCG
ATCAGCTCCTAAGACAACGAGGGGAACCGTTTCTCTGGATTACTTCCTCA
CCTCCTCTACACGGACGTGCTGGAGAGGAGTTTCGTTATGGTGTCGAATA
CAGGACATCGGAGACCAAAGTTCAATTCAAAATAGACAATGCCCCGGATG
GTATGACCGTAAACAAGGACGGTTTGATCACTTGGAATATTCCGAGGCAT
CAGCCGCAAGGATTCGTTGACGTTACCGTGTCTGTC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig78195:271..606+

>mRNA_M-pyrifera_M_contig78195.18386.1 ID=mRNA_M-pyrifera_M_contig78195.18386.1|Name=mRNA_M-pyrifera_M_contig78195.18386.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=642bp|location=Sequence derived from alignment at M-pyrifera_M_contig78195:271..606+ (Macrocystis pyrifera P11B4 male)
ATGGAGAGTCGGTGCCATTTCATCCGAGCGGCCAACTTGTTCGTATCAGT
TGGACAGACAGTCGACTTATTCCATGTCGATATCGATCAGCTCCTAAGAC
AACGAGGGGAACCGTTTCTCTGGATTACTTCCTCACCTCCTCTACACGGA
CGTGCTGGAGAGGAGTTTCGTTATGGTGTCGAATACAGGACATCGGAGAC
CAAAGTTCAATTCAAAATAGACAATGCCCCGGATGGTATGACCGTAAACA
AGGACGGTTTGATCACTTGGAATATTCCGAGGCATCAGCCGCAAGGATTC
GTTGACGTTACCGTGTCTGTCATGGAGAGTCGGTGCCATTTCATCCGAGC
GGCCAACTTGTTCGTATCAGTTGGACAGACAGTCGACTTATTCCATGTCG
ATATCGATCAGCTCCTAAGACAACGAGGGGAACCGTTTCTCTGGATTACT
TCCTCACCTCCTCTACACGGACGTGCTGGAGAGGAGTTTCGTTATGGTGT
CGAATACAGGACATCGGAGACCAAAGTTCAATTCAAAATAGACAATGCCC
CGGATGGTATGACCGTAAACAAGGACGGTTTGATCACTTGGAATATTCCG
AGGCATCAGCCGCAAGGATTCGTTGACGTTACCGTGTCTGTC
back to top