mRNA_M-pyrifera_M_contig78181.18379.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig78181.18379.1
Unique NamemRNA_M-pyrifera_M_contig78181.18379.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig78181.18379.1 vs. uniprot
Match: A0A2E3MFS0_9GAMM (6-carboxy-5,6,7,8-tetrahydropterin synthase n=1 Tax=Legionellales bacterium TaxID=2026754 RepID=A0A2E3MFS0_9GAMM)

HSP 1 Score: 59.7 bits (143), Expect = 8.010e-10
Identity = 28/47 (59.57%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:    1 NVTVEELSCWFIELLVAEE-DISKYNISHINLKVFSGPGQSASAEWK 138
            N+TVEELS WFI  L  E+ ++ K+ I  I +KVFSGPGQS SA+WK
Sbjct:  115 NITVEELSLWFINELTKEQAELDKHGIHEILIKVFSGPGQSGSAQWK 161
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BLAST of mRNA_M-pyrifera_M_contig78181.18379.1 vs. uniprot
Match: A0A0A2TA30_9GAMM (6-carboxy-5,6,7,8-tetrahydropterin synthase n=5 Tax=Legionella TaxID=445 RepID=A0A0A2TA30_9GAMM)

HSP 1 Score: 57.4 bits (137), Expect = 6.430e-9
Identity = 28/46 (60.87%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:    1 NVTVEELSCWFI-ELLVAEEDISKYNISHINLKVFSGPGQSASAEW 135
            N+TVEELS WFI EL+  +E++ K+ I  I +KVFS PGQSAS EW
Sbjct:  116 NITVEELSRWFINELIKEKEELDKHRIEKIVVKVFSAPGQSASHEW 161
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BLAST of mRNA_M-pyrifera_M_contig78181.18379.1 vs. uniprot
Match: A0A0W0Y580_9GAMM (6-carboxy-5,6,7,8-tetrahydropterin synthase n=10 Tax=Legionellaceae TaxID=444 RepID=A0A0W0Y580_9GAMM)

HSP 1 Score: 57.4 bits (137), Expect = 6.960e-9
Identity = 26/47 (55.32%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:    1 NVTVEELSCWFIELLVAE-EDISKYNISHINLKVFSGPGQSASAEWK 138
            N+TVEELS WF+E L+ E E++ ++ I  + +KVFS PGQSAS EW+
Sbjct:  116 NITVEELSRWFVEELIKEKEELDRHRIEKVLVKVFSAPGQSASHEWQ 162
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BLAST of mRNA_M-pyrifera_M_contig78181.18379.1 vs. uniprot
Match: A0A3D0R550_9GAMM (6-carboxy-5,6,7,8-tetrahydropterin synthase n=1 Tax=Legionellales bacterium TaxID=2026754 RepID=A0A3D0R550_9GAMM)

HSP 1 Score: 57.0 bits (136), Expect = 8.890e-9
Identity = 25/48 (52.08%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:    1 NVTVEELSCWFIELLVAEE-DISKYNISHINLKVFSGPGQSASAEWKA 141
            N+TVEELS WF++ L+ ++ +++K+ I+ I +KVFS PGQSAS +W+A
Sbjct:  115 NITVEELSRWFVQELIKDDIELAKHRITRILVKVFSAPGQSASHQWQA 162
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BLAST of mRNA_M-pyrifera_M_contig78181.18379.1 vs. uniprot
Match: A0A0W0WQI0_9GAMM (6-carboxy-5,6,7,8-tetrahydropterin synthase n=1 Tax=Legionella israelensis TaxID=454 RepID=A0A0W0WQI0_9GAMM)

HSP 1 Score: 56.6 bits (135), Expect = 1.270e-8
Identity = 25/46 (54.35%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:    1 NVTVEELSCWFI-ELLVAEEDISKYNISHINLKVFSGPGQSASAEW 135
            N+TVEELS WF+ EL+  +E++ K+ I  I +K+FS PGQSAS +W
Sbjct:  116 NITVEELSRWFVNELIKNKEELEKHRIEQITVKIFSAPGQSASHQW 161
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BLAST of mRNA_M-pyrifera_M_contig78181.18379.1 vs. uniprot
Match: A0A522EZ97_9GAMM (6-carboxy-5,6,7,8-tetrahydropterin synthase n=1 Tax=Legionella sp. TaxID=459 RepID=A0A522EZ97_9GAMM)

HSP 1 Score: 56.2 bits (134), Expect = 1.760e-8
Identity = 27/46 (58.70%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:    1 NVTVEELSCWFI-ELLVAEEDISKYNISHINLKVFSGPGQSASAEW 135
            N+TVEELS WF+ EL   EE++ K+ I  + +KVFS PGQSAS EW
Sbjct:  116 NITVEELSRWFVNELTKDEEELKKHRIEKLVVKVFSAPGQSASHEW 161
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BLAST of mRNA_M-pyrifera_M_contig78181.18379.1 vs. uniprot
Match: A0A354F1B0_9GAMM (6-carboxy-5,6,7,8-tetrahydropterin synthase n=1 Tax=Legionella sp. TaxID=459 RepID=A0A354F1B0_9GAMM)

HSP 1 Score: 55.8 bits (133), Expect = 2.510e-8
Identity = 25/47 (53.19%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:    1 NVTVEELSCWFIELLVAEED-ISKYNISHINLKVFSGPGQSASAEWK 138
            N+TVEELS WF+  L+ + D + ++ I HI +KVFS PGQSAS  W+
Sbjct:  116 NITVEELSRWFVNELIRDADELMRHRIEHITVKVFSAPGQSASHAWQ 162
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BLAST of mRNA_M-pyrifera_M_contig78181.18379.1 vs. uniprot
Match: A0A3C1TTK3_9GAMM (6-carboxy-5,6,7,8-tetrahydropterin synthase n=2 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3C1TTK3_9GAMM)

HSP 1 Score: 55.8 bits (133), Expect = 2.550e-8
Identity = 21/45 (46.67%), Postives = 33/45 (73.33%), Query Frame = 1 
Query:    1 NVTVEELSCWFIELLVAEEDISKYNISHINLKVFSGPGQSASAEW 135
            N+T+EELSCWF+E L++++      I  + ++V SGPGQ A++EW
Sbjct:  116 NITIEELSCWFLETLISDQGFKALRIYKLKVRVSSGPGQWATSEW 160
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BLAST of mRNA_M-pyrifera_M_contig78181.18379.1 vs. uniprot
Match: A0A2H9SUR5_9GAMM (6-carboxy-5,6,7,8-tetrahydropterin synthase n=1 Tax=Legionella sp. TaxID=459 RepID=A0A2H9SUR5_9GAMM)

HSP 1 Score: 55.5 bits (132), Expect = 3.530e-8
Identity = 25/46 (54.35%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:    1 NVTVEELSCWFIELLVAEED-ISKYNISHINLKVFSGPGQSASAEW 135
            N+TVEELS WF+  L+ ++D + K+ I  + +KVFS PGQSAS EW
Sbjct:  116 NITVEELSRWFVNELIKDQDELDKHRIEKVVVKVFSAPGQSASHEW 161
[Close]
BLAST of mRNA_M-pyrifera_M_contig78181.18379.1 vs. uniprot
Match: UPI00048EC6B6 (6-carboxytetrahydropterin synthase n=1 Tax=Legionella fairfieldensis TaxID=45064 RepID=UPI00048EC6B6)

HSP 1 Score: 55.5 bits (132), Expect = 3.530e-8
Identity = 25/47 (53.19%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:    1 NVTVEELSCWFIELLVAEE-DISKYNISHINLKVFSGPGQSASAEWK 138
            N+TVEELS WF+  L+ EE +++++ I  + +KVFS PGQSAS EW+
Sbjct:  116 NITVEELSRWFVAELIKEEVELNRHRIEKVVVKVFSAPGQSASHEWQ 162
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig78181.18379.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E3MFS0_9GAMM8.010e-1059.576-carboxy-5,6,7,8-tetrahydropterin synthase n=1 Ta... [more]
A0A0A2TA30_9GAMM6.430e-960.876-carboxy-5,6,7,8-tetrahydropterin synthase n=5 Ta... [more]
A0A0W0Y580_9GAMM6.960e-955.326-carboxy-5,6,7,8-tetrahydropterin synthase n=10 T... [more]
A0A3D0R550_9GAMM8.890e-952.086-carboxy-5,6,7,8-tetrahydropterin synthase n=1 Ta... [more]
A0A0W0WQI0_9GAMM1.270e-854.356-carboxy-5,6,7,8-tetrahydropterin synthase n=1 Ta... [more]
A0A522EZ97_9GAMM1.760e-858.706-carboxy-5,6,7,8-tetrahydropterin synthase n=1 Ta... [more]
A0A354F1B0_9GAMM2.510e-853.196-carboxy-5,6,7,8-tetrahydropterin synthase n=1 Ta... [more]
A0A3C1TTK3_9GAMM2.550e-846.676-carboxy-5,6,7,8-tetrahydropterin synthase n=2 Ta... [more]
A0A2H9SUR5_9GAMM3.530e-854.356-carboxy-5,6,7,8-tetrahydropterin synthase n=1 Ta... [more]
UPI00048EC6B63.530e-853.196-carboxytetrahydropterin synthase n=1 Tax=Legione... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig78181contigM-pyrifera_M_contig78181:102..245 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size144
Cds size144
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816683.081-CDS-M-pyrifera_M_contig78181:101..2451622816683.081-CDS-M-pyrifera_M_contig78181:101..245Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78181 102..245 -
1692278117.3281448-CDS-M-pyrifera_M_contig78181:101..2451692278117.3281448-CDS-M-pyrifera_M_contig78181:101..245Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78181 102..245 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig78181.18379.1prot_M-pyrifera_M_contig78181.18379.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig78181 102..245 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig78181.18379.1

>prot_M-pyrifera_M_contig78181.18379.1 ID=prot_M-pyrifera_M_contig78181.18379.1|Name=mRNA_M-pyrifera_M_contig78181.18379.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=48bp
NVTVEELSCWFIELLVAEEDISKYNISHINLKVFSGPGQSASAEWKA*
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mRNA from alignment at M-pyrifera_M_contig78181:102..245-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig78181.18379.1 ID=mRNA_M-pyrifera_M_contig78181.18379.1|Name=mRNA_M-pyrifera_M_contig78181.18379.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=144bp|location=Sequence derived from alignment at M-pyrifera_M_contig78181:102..245- (Macrocystis pyrifera P11B4 male)
AATGTCACCGTCGAAGAGCTTTCCTGCTGGTTTATTGAATTGCTGGTGGC
CGAAGAAGATATCAGCAAATATAATATCAGTCACATCAACCTGAAAGTTT
TCTCTGGCCCCGGGCAATCGGCGAGCGCGGAGTGGAAGGCATAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig78181:102..245-

>mRNA_M-pyrifera_M_contig78181.18379.1 ID=mRNA_M-pyrifera_M_contig78181.18379.1|Name=mRNA_M-pyrifera_M_contig78181.18379.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=288bp|location=Sequence derived from alignment at M-pyrifera_M_contig78181:102..245- (Macrocystis pyrifera P11B4 male)
AATGTCACCGTCGAAGAGCTTTCCTGCTGGTTTATTGAATTGCTGGTGGC
CGAAGAAGATATCAGCAAATATAATATCAGTCACATCAACCTGAAAGTTT
TCTCTGGCCCCGGGCAATCGGCGAGCGCGGAGTGGAAGGCATAGAATGTC
ACCGTCGAAGAGCTTTCCTGCTGGTTTATTGAATTGCTGGTGGCCGAAGA
AGATATCAGCAAATATAATATCAGTCACATCAACCTGAAAGTTTTCTCTG
GCCCCGGGCAATCGGCGAGCGCGGAGTGGAAGGCATAG
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