mRNA_M-pyrifera_M_contig78147.18374.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig78147.18374.1
Unique NamemRNA_M-pyrifera_M_contig78147.18374.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig78147.18374.1 vs. uniprot
Match: D7G2I1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2I1_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 2.910e-37
Identity = 71/119 (59.66%), Postives = 88/119 (73.95%), Query Frame = 1
Query:    4 LDGLPRGVIGCCPVCRKFSIVGKGKRKFTVNRMQVPLSPGIISSVYRAQGETIPKLVLDIRKPVDGYMDSAAVYVALSRATDASKLFLLSPVTLDALTHPQDDDVAAMIDYLERLDKAT 360
            LDGL RGVI   PV RKF+IVG  KRKFT  R Q+PL+ G +SSVYR+QG+T+PK++LDIR+P    +D AAVYVALSRAT    L LL PVTL  L  PQ+ D+ A+++YL RLD+ T
Sbjct:  202 LDGLQRGVIAVAPVERKFTIVGINKRKFTFKRRQIPLTAGCLSSVYRSQGQTMPKIILDIRRPPGHAVDCAAVYVALSRATGLGDLNLLFPVTLQDLNQPQNPDIVAIVNYLHRLDETT 320          
BLAST of mRNA_M-pyrifera_M_contig78147.18374.1 vs. uniprot
Match: D7G3U9_ECTSI (ATP-dependent DNA helicase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3U9_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 3.080e-36
Identity = 71/119 (59.66%), Postives = 88/119 (73.95%), Query Frame = 1
Query:    4 LDGLPRGVIGCCPVCRKFSIVGKGKRKFTVNRMQVPLSPGIISSVYRAQGETIPKLVLDIRKPVDGYMDSAAVYVALSRATDASKLFLLSPVTLDALTHPQDDDVAAMIDYLERLDKAT 360
            LDGL RGVI   PV RKF+IVG  KRKFT  R Q+PL+ G +SSVYR+QG+T+PK++LDIR+P    +D AAVYVALSRAT    L LL PVTL  L  PQ+ D+ A+++YL RLD+ T
Sbjct: 1909 LDGLQRGVIAVAPVERKFTIVGINKRKFTFKRRQIPLTAGCLSSVYRSQGQTMPKIILDIRRPPGHAVDCAAVYVALSRATGLGDLNLLFPVTLQDLNQPQNPDIVAIVNYLHRLDETT 2027          
BLAST of mRNA_M-pyrifera_M_contig78147.18374.1 vs. uniprot
Match: A0A5N5QEX6_9AGAM (ATP-dependent DNA helicase n=1 Tax=Ceratobasidium theobromae TaxID=1582974 RepID=A0A5N5QEX6_9AGAM)

HSP 1 Score: 79.7 bits (195), Expect = 6.230e-15
Identity = 46/119 (38.66%), Postives = 66/119 (55.46%), Query Frame = 1
Query:    4 LDGLPRGVIGCCPVCRKFSIVGKGKRKFTVNRMQVPLSPGIISSVYRAQGETIPKLVLDIRKPVDGYMDSAAVYVALSRATDASKLFLLSPVTLDALTHPQDDDVAAMIDYLERLDKAT 360
            ++GL +GVI   P C  F I   GK+  ++ R Q+PL P    + YRAQG+T+P +++DI KP  G +     YVALSR+   S+  LL         +P    + A  D LE+LDK+T
Sbjct: 1818 IEGLEQGVIPIVPTCSSFRIPYNGKQ-ISIRREQIPLIPAYAFTDYRAQGQTLPYVIIDIGKPPTGGLTPFNAYVALSRSKSMSQCRLLRDFDDALFVNPPSSLLLAEDDRLEKLDKST 1935          
BLAST of mRNA_M-pyrifera_M_contig78147.18374.1 vs. uniprot
Match: A0A6H5KXW4_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXW4_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 1.020e-11
Identity = 32/63 (50.79%), Postives = 45/63 (71.43%), Query Frame = 1
Query:    4 LDGLPRGVIGCCPVCRKFSIVGKGKRKFTVNRMQVPLSPGIISSVYRAQGETIPKLVLDIRKP 192
            L+GL RGV+   PV ++ +I G GK KF   R Q+PL  G +SSV+R+QG+T+PK++LDI  P
Sbjct:  682 LEGLDRGVVAIAPVEKECTIEGIGKGKFIFKRRQLPLPAGCVSSVFRSQGQTMPKIILDIHPP 744          
BLAST of mRNA_M-pyrifera_M_contig78147.18374.1 vs. uniprot
Match: A0A2R6R3Y3_9APHY (ATP-dependent DNA helicase n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A2R6R3Y3_9APHY)

HSP 1 Score: 67.0 bits (162), Expect = 1.760e-10
Identity = 44/127 (34.65%), Postives = 66/127 (51.97%), Query Frame = 1
Query:    1 KLDGLPRGVIGCCPVCRKFSI-------VGKGKRKFTVNRMQVPLSPGIISSVYRAQGETIPKLVLDIRKPVDGYMDSAAVYVALSRATDASKLFLLSPVTLDALTHPQDDDVAAMIDYLERLDKAT 360
            +L GL  GVI   P+     I        GKG ++ TV+R Q P++P    + YRAQG+T+P +++DI  P  G ++   VYVALSR++    + LL     +  T   D ++    + LE LD  T
Sbjct: 1800 QLAGLDEGVIPVQPMASTMRIKLNINPKTGKGIQR-TVHRRQYPITPAYAFTDYRAQGQTLPYVLVDIASPPTGGLNLFNVYVALSRSSGRETIRLLRDFDDEVFTQAHDAELTLEDERLEELDVVT 1925          
BLAST of mRNA_M-pyrifera_M_contig78147.18374.1 vs. uniprot
Match: A0A6H5JT57_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT57_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 2.350e-10
Identity = 43/109 (39.45%), Postives = 53/109 (48.62%), Query Frame = 1
Query:    4 LDGLPRGVIGCCPVCRKFSIVGKGKRKFTVNRMQVPLSPGIISSVYRAQ----------------------------GETIPKLVLDIRKPVDGYMDSAAVYVALSRAT 246
            L  L RG +      R F + G   +K++  R Q+PL PG +SSVYRAQ                            GETI  L+L + KPVDG MD +A YVALSRAT
Sbjct: 1082 LPSLNRGEVAVGVESRSFDVRGLHDKKYSFKRGQLPLLPGHLSSVYRAQHFIHAYMHTSVLPQLVSFCLSSCYLSSKGETIKTLLLHMTKPVDGVMDPSAAYVALSRAT 1190          
BLAST of mRNA_M-pyrifera_M_contig78147.18374.1 vs. uniprot
Match: A0A8H2X3J5_9AGAM (ATP-dependent DNA helicase n=1 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H2X3J5_9AGAM)

HSP 1 Score: 66.2 bits (160), Expect = 3.270e-10
Identity = 40/119 (33.61%), Postives = 61/119 (51.26%), Query Frame = 1
Query:    4 LDGLPRGVIGCCPVCRKFSIVGKGKRKFTVNRMQVPLSPGIISSVYRAQGETIPKLVLDIRKPVDGYMDSAAVYVALSRATDASKLFLLSPVTLDALTHPQDDDVAAMIDYLERLDKAT 360
            ++GL  GV+   P+ RK+ I  K  +   V R Q+P++     + YRAQG+TI K+++DI +P  G +     YVALSR++    + LL          P    +AA    L  L+ AT
Sbjct: 1645 IEGLAPGVVPIFPMTRKYEISRKQGKPAQVTRRQLPITAAYAFTDYRAQGQTIKKVIVDIARPPSGGLTPFNAYVALSRSSGTRTIRLLRDFDDALFQQPPSHALAAEDQRLVALNNAT 1763          
BLAST of mRNA_M-pyrifera_M_contig78147.18374.1 vs. uniprot
Match: A0A074S6X6_9AGAM (ATP-dependent DNA helicase (Fragment) n=1 Tax=Rhizoctonia solani 123E TaxID=1423351 RepID=A0A074S6X6_9AGAM)

HSP 1 Score: 65.9 bits (159), Expect = 4.430e-10
Identity = 40/120 (33.33%), Postives = 62/120 (51.67%), Query Frame = 1
Query:    1 KLDGLPRGVIGCCPVCRKFSIVGKGKRKFTVNRMQVPLSPGIISSVYRAQGETIPKLVLDIRKPVDGYMDSAAVYVALSRATDASKLFLLSPVTLDALTHPQDDDVAAMIDYLERLDKAT 360
            ++ GL  GV+   P+ RK+ I  K  +   V R Q+P++     + YRAQG+TI K+++DI +P  G +     YVALSR++    + LL          P   ++AA    L  L+ AT
Sbjct: 1424 QIHGLGLGVVPVFPMTRKYDITRKQGKPAQVTRRQLPITAAYAFTDYRAQGQTIKKVIVDIARPPSGGLTPFNAYVALSRSSGKQTIRLLRDFDDALFQQPPSQELAAEDIRLLTLNHAT 1543          
BLAST of mRNA_M-pyrifera_M_contig78147.18374.1 vs. uniprot
Match: A0A167HPD4_CALVF (Uncharacterized protein n=1 Tax=Calocera viscosa (strain TUFC12733) TaxID=1330018 RepID=A0A167HPD4_CALVF)

HSP 1 Score: 63.5 bits (153), Expect = 5.980e-10
Identity = 38/120 (31.67%), Postives = 61/120 (50.83%), Query Frame = 1
Query:    1 KLDGLPRGVIGCCPVCRKFSIVGKGKRKFTVNRMQVPLSPGIISSVYRAQGETIPKLVLDIRKPVDGYMDSAAVYVALSRATDASKLFLLSPVTLDALTHPQDDDVAAMIDYLERLDKAT 360
            +L GL  GVI      ++F I     + +TV R QVP++     + YRAQG+T+P +++DI  P  G + +   YVALSR+     + LL   +    T    + +    + L+ LD+ T
Sbjct:   59 QLPGLDAGVIPIACTQKQFRITDSEGKTWTVTRNQVPITAAYAITDYRAQGQTLPYVIIDISTPPTGQITAFNAYVALSRSKGRDTIRLLRDFSYKLFTTHSSEYLRLEDERLDSLDRNT 178          
BLAST of mRNA_M-pyrifera_M_contig78147.18374.1 vs. uniprot
Match: A0A814JKR3_9BILA (ATP-dependent DNA helicase n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A814JKR3_9BILA)

HSP 1 Score: 64.7 bits (156), Expect = 1.000e-9
Identity = 41/132 (31.06%), Postives = 61/132 (46.21%), Query Frame = 1
Query:    1 KLDGLPRGVIGCCPVCRKFSIVGKG------------KRKFTVNRMQVPLSPGIISSVYRAQGETIPKLVLDIRKPVDGYMDSAAVYVALSRATDASKLFLLSPVTLDALTHPQDDDVAAMIDYLERLDKAT 360
            KLD LP+ ++    V   F +  K             K K  V R Q P  P    + Y++QG+T+PK+++D+  P       AA YV +SR      L  L P  + AL    + D+   +D L++LDK T
Sbjct:  304 KLDTLPQKLVPIALVEETFEVECKELLSEDERRKRMKKTKLKVTRKQFPFVPAYSITTYKSQGQTLPKIIVDLVFPPGSRPQVAAAYVPVSRVKKLDNLIFLRPFPISALRVRPNPDLLKELDRLDQLDKIT 435          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig78147.18374.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2I1_ECTSI2.910e-3759.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G3U9_ECTSI3.080e-3659.66ATP-dependent DNA helicase n=2 Tax=Ectocarpus sili... [more]
A0A5N5QEX6_9AGAM6.230e-1538.66ATP-dependent DNA helicase n=1 Tax=Ceratobasidium ... [more]
A0A6H5KXW4_9PHAE1.020e-1150.79ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A2R6R3Y3_9APHY1.760e-1034.65ATP-dependent DNA helicase n=1 Tax=Hermanssonia ce... [more]
A0A6H5JT57_9PHAE2.350e-1039.45ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A8H2X3J5_9AGAM3.270e-1033.61ATP-dependent DNA helicase n=1 Tax=Rhizoctonia sol... [more]
A0A074S6X6_9AGAM4.430e-1033.33ATP-dependent DNA helicase (Fragment) n=1 Tax=Rhiz... [more]
A0A167HPD4_CALVF5.980e-1031.67Uncharacterized protein n=1 Tax=Calocera viscosa (... [more]
A0A814JKR3_9BILA1.000e-931.06ATP-dependent DNA helicase n=1 Tax=Didymodactylos ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig78147contigM-pyrifera_M_contig78147:379..738 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score139.4
Seed ortholog evalue1.1e-30
Seed eggNOG ortholog2880.D7G3U9
KEGG koko:K15255,ko:K20647
Hectar predicted targeting categoryother localisation
EggNOG free text desc.G-quadruplex DNA unwinding
EggNOG OGsCOG0507@1,KOG0987@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03029,ko03032,ko04131
Exons1
Model size360
Cds size360
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816682.839939-CDS-M-pyrifera_M_contig78147:378..7381622816682.839939-CDS-M-pyrifera_M_contig78147:378..738Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78147 379..738 +
1692278117.2038686-CDS-M-pyrifera_M_contig78147:378..7381692278117.2038686-CDS-M-pyrifera_M_contig78147:378..738Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78147 379..738 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig78147.18374.1prot_M-pyrifera_M_contig78147.18374.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig78147 379..738 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig78147.18374.1

>prot_M-pyrifera_M_contig78147.18374.1 ID=prot_M-pyrifera_M_contig78147.18374.1|Name=mRNA_M-pyrifera_M_contig78147.18374.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=120bp
KLDGLPRGVIGCCPVCRKFSIVGKGKRKFTVNRMQVPLSPGIISSVYRAQ
GETIPKLVLDIRKPVDGYMDSAAVYVALSRATDASKLFLLSPVTLDALTH
PQDDDVAAMIDYLERLDKAT
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mRNA from alignment at M-pyrifera_M_contig78147:379..738+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig78147.18374.1 ID=mRNA_M-pyrifera_M_contig78147.18374.1|Name=mRNA_M-pyrifera_M_contig78147.18374.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=360bp|location=Sequence derived from alignment at M-pyrifera_M_contig78147:379..738+ (Macrocystis pyrifera P11B4 male)
AAGCTGGACGGGCTCCCTCGAGGTGTCATCGGCTGCTGTCCGGTTTGCAG GAAGTTCTCCATCGTTGGTAAAGGCAAGCGGAAATTCACCGTCAACAGAA TGCAGGTACCTCTGTCTCCTGGTATTATTTCCTCAGTCTATCGAGCACAA GGCGAAACCATCCCTAAACTTGTGCTCGACATTCGTAAGCCAGTAGACGG CTATATGGACAGCGCGGCTGTCTACGTCGCTCTGTCCCGAGCGACCGATG CCAGCAAGCTCTTCTTGCTGTCGCCGGTTACTCTCGACGCTCTGACCCAT CCCCAGGACGACGATGTAGCGGCTATGATCGACTACCTCGAACGCCTCGA CAAGGCTACA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig78147:379..738+

>mRNA_M-pyrifera_M_contig78147.18374.1 ID=mRNA_M-pyrifera_M_contig78147.18374.1|Name=mRNA_M-pyrifera_M_contig78147.18374.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=720bp|location=Sequence derived from alignment at M-pyrifera_M_contig78147:379..738+ (Macrocystis pyrifera P11B4 male)
AAGCTGGACGGGCTCCCTCGAGGTGTCATCGGCTGCTGTCCGGTTTGCAG
GAAGTTCTCCATCGTTGGTAAAGGCAAGCGGAAATTCACCGTCAACAGAA
TGCAGGTACCTCTGTCTCCTGGTATTATTTCCTCAGTCTATCGAGCACAA
GGCGAAACCATCCCTAAACTTGTGCTCGACATTCGTAAGCCAGTAGACGG
CTATATGGACAGCGCGGCTGTCTACGTCGCTCTGTCCCGAGCGACCGATG
CCAGCAAGCTCTTCTTGCTGTCGCCGGTTACTCTCGACGCTCTGACCCAT
CCCCAGGACGACGATGTAGCGGCTATGATCGACTACCTCGAACGCCTCGA
CAAGGCTACAAAGCTGGACGGGCTCCCTCGAGGTGTCATCGGCTGCTGTC
CGGTTTGCAGGAAGTTCTCCATCGTTGGTAAAGGCAAGCGGAAATTCACC
GTCAACAGAATGCAGGTACCTCTGTCTCCTGGTATTATTTCCTCAGTCTA
TCGAGCACAAGGCGAAACCATCCCTAAACTTGTGCTCGACATTCGTAAGC
CAGTAGACGGCTATATGGACAGCGCGGCTGTCTACGTCGCTCTGTCCCGA
GCGACCGATGCCAGCAAGCTCTTCTTGCTGTCGCCGGTTACTCTCGACGC
TCTGACCCATCCCCAGGACGACGATGTAGCGGCTATGATCGACTACCTCG
AACGCCTCGACAAGGCTACA
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