mRNA_M-pyrifera_M_contig78142.18371.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig78142.18371.1
Unique NamemRNA_M-pyrifera_M_contig78142.18371.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig78142.18371.1 vs. uniprot
Match: A0A022PQQ5_ERYGU (U3 small nucleolar RNA-associated protein 11 n=1 Tax=Erythranthe guttata TaxID=4155 RepID=A0A022PQQ5_ERYGU)

HSP 1 Score: 129 bits (324), Expect = 2.060e-34
Identity = 69/139 (49.64%), Postives = 93/139 (66.91%), Query Frame = 1 
Query:   16 MSAWKNVGPRREHRERSQPSRRRRHGLLEKHSDYVKRARNFHSKEDRLLSLRRKAALRNPDEFYQAMTRARTEKGLHRVDRAGGKYSAEEMMLLKTQDASYLSLKATAERRKIEKLEPLVAARPGDRKHAPTHLVWEEE 432
            MS+ +N  PRR H+ERSQP  RRR GLLEKH DYV RA+ FH KED +  LR KAA RNPDEFY  M + +T KG+H+++    KY+ EE+ML+KTQD  Y+  K  +E++KIEKL  ++     D   +  H+ + E+
Sbjct:    1 MSSLRNALPRRAHKERSQPHSRRRFGLLEKHKDYVVRAKAFHQKEDAIQKLREKAAFRNPDEFYFKMIKTKTVKGVHKLESEANKYTQEELMLMKTQDVGYILQKLQSEKKKIEKLSSVLHMHGLDSGSSSKHVYYAED 139
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BLAST of mRNA_M-pyrifera_M_contig78142.18371.1 vs. uniprot
Match: A0A2P2M3Y5_RHIMU (U3 small nucleolar RNA-associated protein 11 n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2M3Y5_RHIMU)

HSP 1 Score: 126 bits (317), Expect = 2.200e-33
Identity = 70/141 (49.65%), Postives = 95/141 (67.38%), Query Frame = 1 
Query:   16 MSAWKNVGPRREHRERSQPSRRRRHGLLEKHSDYVKRARNFHSKEDRLLSLRRKAALRNPDEFYQAMTRARTEKGLHRVDRAGGKYSAEEMMLLKTQDASYLSLKATAERRKIEKLEPLVAARPGDRKHAPTHLVWEEEEE 438
            MS+++N  PRR H+ER+QP  R++ GLLEKH DYV RA+ FH KE+ L  LR KAALRNPDEFY  M + RT  G+HR +    KY+ EE+ML+KTQD  Y+  K  +E++KIEKL   + +   D +H   H+ + E+ E
Sbjct:    1 MSSFRNAIPRRAHKERAQPHSRKKFGLLEKHKDYVIRAKAFHKKEETLQRLREKAALRNPDEFYFKMIKTRTVDGVHRPESEANKYTQEELMLMKTQDIGYVLQKLQSEKKKIEKLSGTLHSL--DTQHLKRHIYYAEDRE 139
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BLAST of mRNA_M-pyrifera_M_contig78142.18371.1 vs. uniprot
Match: A0A6A1VJB0_9ROSI (U3 small nucleolar RNA-associated protein 11 n=1 Tax=Morella rubra TaxID=262757 RepID=A0A6A1VJB0_9ROSI)

HSP 1 Score: 126 bits (316), Expect = 5.010e-33
Identity = 69/141 (48.94%), Postives = 98/141 (69.50%), Query Frame = 1 
Query:   16 MSAWKNVGPRREHRERSQPSRRRRHGLLEKHSDYVKRARNFHSKEDRLLSLRRKAALRNPDEFYQAMTRARTEKGLHRVDRAGGKYSAEEMMLLKTQDASYLSLKATAERRKIEKLEPLVAARPGDRKHAPTHLVWEEEEE 438
            MS+ +N   RR H+ER+QPS RR+ GLLEKH DYV+RA+ FH KE  LL LR KAA RNPDEFY  M +++T +G+H+++    KYS EE+ML+KTQD  Y+  K  +E++KIEKL  ++ +   D + +  H+ + E+ E
Sbjct:    1 MSSLRNAISRRAHKERAQPSARRKFGLLEKHKDYVERAQAFHKKEQTLLKLREKAAFRNPDEFYFRMIKSKTVRGVHKLESEADKYSPEELMLMKTQDMGYILQKLQSEKKKIEKLSAVLHSL--DNQPSNRHVYYAEDRE 139
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BLAST of mRNA_M-pyrifera_M_contig78142.18371.1 vs. uniprot
Match: A0A251JT19_MANES (Uncharacterized protein n=1 Tax=Manihot esculenta TaxID=3983 RepID=A0A251JT19_MANES)

HSP 1 Score: 123 bits (308), Expect = 6.950e-33
Identity = 65/116 (56.03%), Postives = 83/116 (71.55%), Query Frame = 1 
Query:   16 MSAWKNVGPRREHRERSQPSRRRRHGLLEKHSDYVKRARNFHSKEDRLLSLRRKAALRNPDEFYQAMTRARTEKGLHRVDRAGGKYSAEEMMLLKTQDASYLSLKATAERRKIEKL 363
            MS+ +N  PRR H+ERSQP  R+++GLLEKH DYV RA+ FH KED L  L+ KAA RNPDEFY  M + RT  G+HR +    KY+ EE+ML+KTQD  Y+  K  +E++KIEKL
Sbjct:    1 MSSLRNAIPRRAHKERSQPHSRKKYGLLEKHKDYVVRAKAFHKKEDTLRRLKEKAAFRNPDEFYFKMIKTRTVHGVHRPESEANKYTHEELMLMKTQDIGYVFQKLQSEKKKIEKL 116
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BLAST of mRNA_M-pyrifera_M_contig78142.18371.1 vs. uniprot
Match: UPI000B8CBA15 (LOW QUALITY PROTEIN: probable U3 small nucleolar RNA-associated protein 11 n=1 Tax=Carica papaya TaxID=3649 RepID=UPI000B8CBA15)

HSP 1 Score: 124 bits (311), Expect = 1.750e-32
Identity = 67/141 (47.52%), Postives = 95/141 (67.38%), Query Frame = 1 
Query:   16 MSAWKNVGPRREHRERSQPSRRRRHGLLEKHSDYVKRARNFHSKEDRLLSLRRKAALRNPDEFYQAMTRARTEKGLHRVDRAGGKYSAEEMMLLKTQDASYLSLKATAERRKIEKLEPLVAARPGDRKHAPTHLVWEEEEE 438
            MS+ KN  PRR H+ER+QP  R++ GLLEKH DYV RA++FH KE+ L  LR KAA RNPDEFY  M + +T  G+HR +    +Y+ EE+ML+KTQD  Y++ K  +E++KIEKL   + +   D + +  H+ + E+ E
Sbjct:    1 MSSLKNAIPRRAHKERAQPQSRKKFGLLEKHKDYVVRAKSFHRKEETLRKLREKAAFRNPDEFYFKMIKTKTVNGVHRPENQANRYTQEELMLMKTQDVGYVTQKLQSEKKKIEKLTATLHSL--DNQPSSRHIYYAEDRE 139
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BLAST of mRNA_M-pyrifera_M_contig78142.18371.1 vs. uniprot
Match: A0A8B8KQ86_ABRPR (U3 small nucleolar RNA-associated protein 11 n=1 Tax=Abrus precatorius TaxID=3816 RepID=A0A8B8KQ86_ABRPR)

HSP 1 Score: 124 bits (310), Expect = 2.470e-32
Identity = 66/116 (56.90%), Postives = 83/116 (71.55%), Query Frame = 1 
Query:   16 MSAWKNVGPRREHRERSQPSRRRRHGLLEKHSDYVKRARNFHSKEDRLLSLRRKAALRNPDEFYQAMTRARTEKGLHRVDRAGGKYSAEEMMLLKTQDASYLSLKATAERRKIEKL 363
            MS+ +N  PRR H+ER+QPS R++ GLLEKH DYV+RAR FH KED L  LR KAA RN DEFY  M R RT  G+HR +    KY+ EE++L+KTQD  Y+  K  +ER+KIE+L
Sbjct:    1 MSSLRNAIPRRAHKERAQPSSRKKFGLLEKHKDYVQRARAFHKKEDALRKLREKAANRNEDEFYFKMVRTRTVNGIHRPESEANKYNQEELILMKTQDIGYVLQKVQSERKKIERL 116
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BLAST of mRNA_M-pyrifera_M_contig78142.18371.1 vs. uniprot
Match: A0A371HRD5_MUCPR (U3 small nucleolar RNA-associated protein 11 n=1 Tax=Mucuna pruriens TaxID=157652 RepID=A0A371HRD5_MUCPR)

HSP 1 Score: 124 bits (310), Expect = 2.470e-32
Identity = 70/141 (49.65%), Postives = 92/141 (65.25%), Query Frame = 1 
Query:   16 MSAWKNVGPRREHRERSQPSRRRRHGLLEKHSDYVKRARNFHSKEDRLLSLRRKAALRNPDEFYQAMTRARTEKGLHRVDRAGGKYSAEEMMLLKTQDASYLSLKATAERRKIEKLEPLVAARPGDRKHAPTHLVWEEEEE 438
            MS+ +N  PRR H+ER QPS R++ GLLEKH DYV+RA+ FH KED L  LR KAA RN DEFY  M R RT  G+HR +    KY+ EE+ML+KTQD  Y+  K  +ER+K+E+L    +    D + A  H+ + E+ E
Sbjct:    1 MSSLRNAIPRRAHKERPQPSSRKKFGLLEKHKDYVQRAKAFHKKEDTLRKLREKAANRNQDEFYFKMVRTRTVDGVHRPESEANKYTQEELMLMKTQDMGYILQKVQSERKKVERLA--ASLHSTDNQPANKHVFFAEDRE 139
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BLAST of mRNA_M-pyrifera_M_contig78142.18371.1 vs. uniprot
Match: UPI001B7EC93D (probable U3 small nucleolar RNA-associated protein 11 isoform X2 n=1 Tax=Juglans microcarpa x Juglans regia TaxID=2249226 RepID=UPI001B7EC93D)

HSP 1 Score: 122 bits (306), Expect = 2.750e-32
Identity = 65/116 (56.03%), Postives = 83/116 (71.55%), Query Frame = 1 
Query:   16 MSAWKNVGPRREHRERSQPSRRRRHGLLEKHSDYVKRARNFHSKEDRLLSLRRKAALRNPDEFYQAMTRARTEKGLHRVDRAGGKYSAEEMMLLKTQDASYLSLKATAERRKIEKL 363
            MS+ +N   RR H+ERSQP  RR+ GLLEKH DYV+RA+ FH KE  L  LR KAA RNPDEFY  M +ART  G+H+++    KY+ EE+ML+KTQD  Y+  K  +E++KIEKL
Sbjct:    1 MSSLRNAISRRAHKERSQPHSRRKFGLLEKHKDYVERAKVFHKKEQTLQKLREKAAFRNPDEFYFRMIKARTVDGVHKLENETNKYNTEELMLMKTQDMGYILQKLQSEKKKIEKL 116
[Close]
BLAST of mRNA_M-pyrifera_M_contig78142.18371.1 vs. uniprot
Match: A0A1D1ZC53_9ARAE (U3 small nucleolar RNA-associated protein 11 n=2 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1ZC53_9ARAE)

HSP 1 Score: 123 bits (309), Expect = 3.480e-32
Identity = 68/140 (48.57%), Postives = 91/140 (65.00%), Query Frame = 1 
Query:   16 MSAWKNVGPRREHRERSQPSRRRRHGLLEKHSDYVKRARNFHSKEDRLLSLRRKAALRNPDEFYQAMTRARTEKGLHRVDRAGGKYSAEEMMLLKTQDASYLSLKATAERRKIEKLEPLVAARPGDRKHAPTHLVWEEEE 435
            MS+ +N   RR H+ER+QP  R++ GLLEKH DYV RAR FH KE+ L  L+ KAA RNPDEFY  M   RT  G+HR +    KYS EE+ML+KTQDA Y+  K  +ER+K+EKL  ++ +     ++  T+   + EE
Sbjct:    1 MSSLRNAISRRAHKERAQPHDRKKFGLLEKHKDYVVRARAFHQKEETLRKLKEKAAFRNPDEFYFKMVNTRTVDGIHRPEGLANKYSQEELMLMKTQDAGYILQKVQSERKKVEKLSSVLHSLDNGLQNKHTYFAEDREE 140
[Close]
BLAST of mRNA_M-pyrifera_M_contig78142.18371.1 vs. uniprot
Match: UPI001F5E6420 (probable U3 small nucleolar RNA-associated protein 11 n=1 Tax=Vigna umbellata TaxID=87088 RepID=UPI001F5E6420)

HSP 1 Score: 122 bits (305), Expect = 3.880e-32
Identity = 70/141 (49.65%), Postives = 92/141 (65.25%), Query Frame = 1 
Query:   16 MSAWKNVGPRREHRERSQPSRRRRHGLLEKHSDYVKRARNFHSKEDRLLSLRRKAALRNPDEFYQAMTRARTEKGLHRVDRAGGKYSAEEMMLLKTQDASYLSLKATAERRKIEKLEPLVAARPGDRKHAPTHLVWEEEEE 438
            MS+ +N  P R H+ERSQPS R++ GLLEKH DYV+RA+ FH KED L  LR KAA RN DEFY  M R +T  G+HR +    KY+ EE+ML+KTQD  Y+  K  +ER+KIE+L    +    D + A  H+ + E+ E
Sbjct:    1 MSSLRNAIPSRAHKERSQPSARKKFGLLEKHKDYVQRAKAFHKKEDTLRKLREKAANRNEDEFYFKMVRTKTVDGVHRPESEANKYTQEELMLMKTQDMGYILQKVQSERKKIERLT--ASLHSIDNQPANKHVFFAEDRE 139
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig78142.18371.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A022PQQ5_ERYGU2.060e-3449.64U3 small nucleolar RNA-associated protein 11 n=1 T... [more]
A0A2P2M3Y5_RHIMU2.200e-3349.65U3 small nucleolar RNA-associated protein 11 n=1 T... [more]
A0A6A1VJB0_9ROSI5.010e-3348.94U3 small nucleolar RNA-associated protein 11 n=1 T... [more]
A0A251JT19_MANES6.950e-3356.03Uncharacterized protein n=1 Tax=Manihot esculenta ... [more]
UPI000B8CBA151.750e-3247.52LOW QUALITY PROTEIN: probable U3 small nucleolar R... [more]
A0A8B8KQ86_ABRPR2.470e-3256.90U3 small nucleolar RNA-associated protein 11 n=1 T... [more]
A0A371HRD5_MUCPR2.470e-3249.65U3 small nucleolar RNA-associated protein 11 n=1 T... [more]
UPI001B7EC93D2.750e-3256.03probable U3 small nucleolar RNA-associated protein... [more]
A0A1D1ZC53_9ARAE3.480e-3248.57U3 small nucleolar RNA-associated protein 11 n=2 T... [more]
UPI001F5E64203.880e-3249.65probable U3 small nucleolar RNA-associated protein... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig78142contigM-pyrifera_M_contig78142:490..963 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score133.7
Seed ortholog evalue7.5e-29
Seed eggNOG ortholog4155.Migut.J01686.1.p
Preferred nameEDA14
KEGG koko:K14769
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009553,GO:0009561,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030684,GO:0031974,GO:0031981,GO:0032040,GO:0032501,GO:0032502,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0048229,GO:0048856,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:1901360,GO:1990904
EggNOG free text desc.U3 small nucleolar RNA-associated protein 11
EggNOG OGs37HZ9@33090,3G7FX@35493,44GQP@71274,COG5223@1,KOG3237@2759
COG Functional cat.S
Best tax levelasterids
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Exons1
Model size474
Cds size459
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816682.7194102-UTR-M-pyrifera_M_contig78142:489..5041622816682.7194102-UTR-M-pyrifera_M_contig78142:489..504Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig78142 490..504 +
1692278117.1230505-UTR-M-pyrifera_M_contig78142:489..5041692278117.1230505-UTR-M-pyrifera_M_contig78142:489..504Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig78142 490..504 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816682.7312114-CDS-M-pyrifera_M_contig78142:504..9631622816682.7312114-CDS-M-pyrifera_M_contig78142:504..963Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78142 505..963 +
1692278117.1492913-CDS-M-pyrifera_M_contig78142:504..9631692278117.1492913-CDS-M-pyrifera_M_contig78142:504..963Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78142 505..963 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig78142.18371.1prot_M-pyrifera_M_contig78142.18371.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig78142 505..963 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig78142.18371.1

>prot_M-pyrifera_M_contig78142.18371.1 ID=prot_M-pyrifera_M_contig78142.18371.1|Name=mRNA_M-pyrifera_M_contig78142.18371.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=153bp
MSAWKNVGPRREHRERSQPSRRRRHGLLEKHSDYVKRARNFHSKEDRLLS
LRRKAALRNPDEFYQAMTRARTEKGLHRVDRAGGKYSAEEMMLLKTQDAS
YLSLKATAERRKIEKLEPLVAARPGDRKHAPTHLVWEEEEEGGEGGRGEG
GEG
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mRNA from alignment at M-pyrifera_M_contig78142:490..963+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig78142.18371.1 ID=mRNA_M-pyrifera_M_contig78142.18371.1|Name=mRNA_M-pyrifera_M_contig78142.18371.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=474bp|location=Sequence derived from alignment at M-pyrifera_M_contig78142:490..963+ (Macrocystis pyrifera P11B4 male)
GTTTTTCTTGGTGGCATGAGTGCGTGGAAGAATGTTGGTCCTCGGCGCGA
GCACCGTGAGCGTTCGCAGCCTTCTCGTCGTCGGCGCCACGGGCTGTTGG
AGAAGCACTCGGACTACGTGAAGCGGGCTCGCAATTTCCACTCGAAGGAG
GATCGGCTCCTTTCTCTGCGGCGCAAGGCTGCGTTGCGGAATCCTGACGA
GTTCTACCAGGCCATGACACGGGCGCGGACCGAGAAGGGGCTGCACCGGG
TGGATAGAGCCGGCGGAAAGTACTCTGCAGAGGAAATGATGCTCCTCAAG
ACGCAAGACGCCTCCTACCTCTCCCTCAAAGCCACTGCCGAACGGAGGAA
AATCGAAAAGCTAGAACCTCTCGTGGCAGCACGACCAGGGGACAGAAAAC
ACGCCCCAACACACCTCGTGTGGGAGGAGGAGGAGGAAGGAGGGGAAGGG
GGACGAGGAGAAGGGGGTGAGGGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig78142:490..963+

>mRNA_M-pyrifera_M_contig78142.18371.1 ID=mRNA_M-pyrifera_M_contig78142.18371.1|Name=mRNA_M-pyrifera_M_contig78142.18371.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=918bp|location=Sequence derived from alignment at M-pyrifera_M_contig78142:490..963+ (Macrocystis pyrifera P11B4 male)
ATGAGTGCGTGGAAGAATGTTGGTCCTCGGCGCGAGCACCGTGAGCGTTC
GCAGCCTTCTCGTCGTCGGCGCCACGGGCTGTTGGAGAAGCACTCGGACT
ACGTGAAGCGGGCTCGCAATTTCCACTCGAAGGAGGATCGGCTCCTTTCT
CTGCGGCGCAAGGCTGCGTTGCGGAATCCTGACGAGTTCTACCAGGCCAT
GACACGGGCGCGGACCGAGAAGGGGCTGCACCGGGTGGATAGAGCCGGCG
GAAAGTACTCTGCAGAGGAAATGATGCTCCTCAAGACGCAAGACGCCTCC
TACCTCTCCCTCAAAGCCACTGCCGAACGGAGGAAAATCGAAAAGCTAGA
ACCTCTCGTGGCAGCACGACCAGGGGACAGAAAACACGCCCCAACACACC
TCGTGTGGGAGGAGGAGGAGGAAGGAGGGGAAGGGGGACGAGGAGAAGGG
GGTGAGGGAATGAGTGCGTGGAAGAATGTTGGTCCTCGGCGCGAGCACCG
TGAGCGTTCGCAGCCTTCTCGTCGTCGGCGCCACGGGCTGTTGGAGAAGC
ACTCGGACTACGTGAAGCGGGCTCGCAATTTCCACTCGAAGGAGGATCGG
CTCCTTTCTCTGCGGCGCAAGGCTGCGTTGCGGAATCCTGACGAGTTCTA
CCAGGCCATGACACGGGCGCGGACCGAGAAGGGGCTGCACCGGGTGGATA
GAGCCGGCGGAAAGTACTCTGCAGAGGAAATGATGCTCCTCAAGACGCAA
GACGCCTCCTACCTCTCCCTCAAAGCCACTGCCGAACGGAGGAAAATCGA
AAAGCTAGAACCTCTCGTGGCAGCACGACCAGGGGACAGAAAACACGCCC
CAACACACCTCGTGTGGGAGGAGGAGGAGGAAGGAGGGGAAGGGGGACGA
GGAGAAGGGGGTGAGGGA
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