mRNA_M-pyrifera_M_contig78134.18368.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig78134.18368.1
Unique NamemRNA_M-pyrifera_M_contig78134.18368.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig78134.18368.1 vs. uniprot
Match: A0A7K2CTK5_9ACTN (SDR family oxidoreductase n=6 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7K2CTK5_9ACTN)

HSP 1 Score: 216 bits (550), Expect = 1.190e-67
Identity = 107/129 (82.95%), Postives = 118/129 (91.47%), Query Frame = 1
Query:    1 GPPFPTNKPAKAGFVYGAPKAALNRLTVAAASECEGQGIAVNALAPQAAIATPALVEAGWVDSDMFEPLETMAEAALALCTGDPDVLTGRIAFSLQLLAELDRPVRDLHGEQLVEGWQPADLTAVIAAQ 387
            GPPFPT+KP+KAGFVYGAPKAALN+LTV+AASECEGQG++VNAL PQAAIATP LVEAGW+D DMFEPL+TMAEAALAL TGDPD+LTGRIAFSLQLL EL+RPVRDL GE LVEGWQPAD+   IA Q
Sbjct:  189 GPPFPTSKPSKAGFVYGAPKAALNKLTVSAASECEGQGVSVNALTPQAAIATPILVEAGWIDEDMFEPLDTMAEAALALVTGDPDLLTGRIAFSLQLLVELNRPVRDLMGESLVEGWQPADIPTAIARQ 317          
BLAST of mRNA_M-pyrifera_M_contig78134.18368.1 vs. uniprot
Match: A0A6B0WP47_9ACTN (SDR family oxidoreductase n=6 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B0WP47_9ACTN)

HSP 1 Score: 202 bits (514), Expect = 1.190e-62
Identity = 103/129 (79.84%), Postives = 111/129 (86.05%), Query Frame = 1
Query:    1 GPPFPTNKPAKAGFVYGAPKAALNRLTVAAASECEGQGIAVNALAPQAAIATPALVEAGWVDSDMFEPLETMAEAALALCTGDPDVLTGRIAFSLQLLAELDRPVRDLHGEQLVEGWQPADLTAVIAAQ 387
            GPPFPTNKP+KAG +YGA KAALNRLTV+ ASECEGQGIAVNAL+PQ AIATPALV AGWV+  MFEPLETMAEA LALCT DP VLTGRIAFSLQLL EL RPV DL GE+L+EGWQP DL  +IA Q
Sbjct:  154 GPPFPTNKPSKAGAMYGASKAALNRLTVSVASECEGQGIAVNALSPQGAIATPALVAAGWVEGVMFEPLETMAEATLALCTADPAVLTGRIAFSLQLLVELQRPVLDLRGEELLEGWQPEDLPGIIARQ 282          
BLAST of mRNA_M-pyrifera_M_contig78134.18368.1 vs. uniprot
Match: A0A7K1EBN4_9ACTN (SDR family NAD(P)-dependent oxidoreductase (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7K1EBN4_9ACTN)

HSP 1 Score: 199 bits (506), Expect = 1.250e-61
Identity = 102/129 (79.07%), Postives = 110/129 (85.27%), Query Frame = 1
Query:    1 GPPFPTNKPAKAGFVYGAPKAALNRLTVAAASECEGQGIAVNALAPQAAIATPALVEAGWVDSDMFEPLETMAEAALALCTGDPDVLTGRIAFSLQLLAELDRPVRDLHGEQLVEGWQPADLTAVIAAQ 387
            GPPFPTNKPA  GF YGA KAALNRLT+AAASE  GQGIA NAL PQAAIATP LV+AGW+   MFEPLETMAEAALALCTGDP++LTGRIAFSLQLL EL RPV DL GE+LV+GWQP+DL  VI AQ
Sbjct:  154 GPPFPTNKPATGGFQYGASKAALNRLTIAAASETHGQGIAANALTPQAAIATPELVKAGWIRGPMFEPLETMAEAALALCTGDPEILTGRIAFSLQLLVELGRPVYDLLGEELVDGWQPSDLPHVIQAQ 282          
BLAST of mRNA_M-pyrifera_M_contig78134.18368.1 vs. uniprot
Match: A0A6B1E9M9_9ACTN (SDR family oxidoreductase n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1E9M9_9ACTN)

HSP 1 Score: 199 bits (506), Expect = 1.930e-61
Identity = 103/129 (79.84%), Postives = 111/129 (86.05%), Query Frame = 1
Query:    1 GPPFPTNKPAKAGFVYGAPKAALNRLTVAAASECEGQGIAVNALAPQAAIATPALVEAGWVDSDMFEPLETMAEAALALCTGDPDVLTGRIAFSLQLLAELDRPVRDLHGEQLVEGWQPADLTAVIAAQ 387
            GPPFPTNKP+KAG +YGA KAALNRLTV+ ASECEGQGIAVNALAPQ AIATP+LV AGWV+  M EPLETMAEAALALCTGDPD LTGRIAFSLQLL EL RPV DL GE LV+GWQP DL  +I+ Q
Sbjct:  154 GPPFPTNKPSKAGAMYGATKAALNRLTVSVASECEGQGIAVNALAPQGAIATPSLVAAGWVEGVMLEPLETMAEAALALCTGDPDRLTGRIAFSLQLLVELRRPVFDLLGESLVDGWQPEDLPDIISRQ 282          
BLAST of mRNA_M-pyrifera_M_contig78134.18368.1 vs. uniprot
Match: A0A6J7N2W4_9ZZZZ (Unannotated protein n=1 Tax=freshwater metagenome TaxID=449393 RepID=A0A6J7N2W4_9ZZZZ)

HSP 1 Score: 198 bits (504), Expect = 5.300e-61
Identity = 101/129 (78.29%), Postives = 109/129 (84.50%), Query Frame = 1
Query:    1 GPPFPTNKPAKAGFVYGAPKAALNRLTVAAASECEGQGIAVNALAPQAAIATPALVEAGWVDSDMFEPLETMAEAALALCTGDPDVLTGRIAFSLQLLAELDRPVRDLHGEQLVEGWQPADLTAVIAAQ 387
            GPPFPTNKPA  GFVYG+ KAALNRLTVAAASE  GQGIAVN L PQAAIATPAL+E GW+D  M+EP++TMAEAALAL TGDP VLTGRIA+SLQLL EL RPV DLHG  LVEGWQPAD+ AVI  Q
Sbjct:  165 GPPFPTNKPATGGFVYGSAKAALNRLTVAAASETHGQGIAVNGLTPQAAIATPALIEGGWIDDTMYEPMDTMAEAALALVTGDPAVLTGRIAYSLQLLVELRRPVYDLHGVALVEGWQPADIPAVITRQ 293          
BLAST of mRNA_M-pyrifera_M_contig78134.18368.1 vs. uniprot
Match: A0A6I2ZV68_9ACTN (SDR family NAD(P)-dependent oxidoreductase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A6I2ZV68_9ACTN)

HSP 1 Score: 198 bits (504), Expect = 4.980e-60
Identity = 101/129 (78.29%), Postives = 109/129 (84.50%), Query Frame = 1
Query:    1 GPPFPTNKPAKAGFVYGAPKAALNRLTVAAASECEGQGIAVNALAPQAAIATPALVEAGWVDSDMFEPLETMAEAALALCTGDPDVLTGRIAFSLQLLAELDRPVRDLHGEQLVEGWQPADLTAVIAAQ 387
            GPPFPTNKPA  GFVYG+ KAALNRLTVAAASE  GQGIAVN L PQAAIATPAL+E GW+D  M+EP++TMAEAALAL TGDP VLTGRIA+SLQLL EL RPV DLHG  LVEGWQPAD+ AVI  Q
Sbjct:  249 GPPFPTNKPATGGFVYGSAKAALNRLTVAAASETHGQGIAVNGLTPQAAIATPALIEGGWIDDTMYEPMDTMAEAALALVTGDPAVLTGRIAYSLQLLVELRRPVYDLHGVALVEGWQPADIPAVITRQ 377          
BLAST of mRNA_M-pyrifera_M_contig78134.18368.1 vs. uniprot
Match: A0A538D8Q1_9ACTN (SDR family oxidoreductase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538D8Q1_9ACTN)

HSP 1 Score: 194 bits (493), Expect = 5.090e-59
Identity = 99/129 (76.74%), Postives = 106/129 (82.17%), Query Frame = 1
Query:    1 GPPFPTNKPAKAGFVYGAPKAALNRLTVAAASECEGQGIAVNALAPQAAIATPALVEAGWVDSDMFEPLETMAEAALALCTGDPDVLTGRIAFSLQLLAELDRPVRDLHGEQLVEGWQPADLTAVIAAQ 387
            GPPFP+N+PAK+G  YGA KAALNRLT+A ASECEGQGI+VNAL PQAAIATPAL  AGW+D  MFEPLETMAEAALAL TGDP VLTGRIAFSLQLL EL RPV DL G  LV+GWQP DL   I  Q
Sbjct:  192 GPPFPSNRPAKSGAAYGASKAALNRLTIAVASECEGQGISVNALTPQAAIATPALASAGWIDQVMFEPLETMAEAALALITGDPAVLTGRIAFSLQLLLELQRPVHDLDGRDLVDGWQPRDLRTAIERQ 320          
BLAST of mRNA_M-pyrifera_M_contig78134.18368.1 vs. uniprot
Match: A0A538DJ86_9ACTN (SDR family oxidoreductase (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538DJ86_9ACTN)

HSP 1 Score: 157 bits (396), Expect = 1.460e-45
Identity = 79/92 (85.87%), Postives = 84/92 (91.30%), Query Frame = 1
Query:    1 GPPFPTNKPAKAGFVYGAPKAALNRLTVAAASECEGQGIAVNALAPQAAIATPALVEAGWVDSDMFEPLETMAEAALALCTGDPDVLTGRIA 276
            GPPFPTNKPAK GFVYG+ KAALNRLTVAAASECEGQGIAVNAL PQAAIATP+LV  GW+D  MFEPLETM EAA+ALCTGDP+VLTGRIA
Sbjct:  154 GPPFPTNKPAKGGFVYGSAKAALNRLTVAAASECEGQGIAVNALTPQAAIATPSLVAGGWIDDIMFEPLETMGEAAVALCTGDPNVLTGRIA 245          
BLAST of mRNA_M-pyrifera_M_contig78134.18368.1 vs. uniprot
Match: A0A7X6NZ68_9ACTN (SDR family oxidoreductase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X6NZ68_9ACTN)

HSP 1 Score: 152 bits (385), Expect = 3.300e-43
Identity = 84/129 (65.12%), Postives = 93/129 (72.09%), Query Frame = 1
Query:    1 GPPFPTNKPAKAGFVYGAPKAALNRLTVAAASECEGQGIAVNALAPQAAIATPALVEAGWVDSDMFEPLETMAEAALALCTGDPDVLTGRIAFSLQLLAELDRPVRDLHGEQLVEGWQPADLTAVIAAQ 387
            GPPFPT K A  G  YG  KAALNRLT + A+E    GIAVNALAPQAAIATP L+E+G V +D FEPLETMAEA LAL T DP  L+GRI  S++LL ELDRPV  L G  LV+GWQP DL A I  Q
Sbjct:  162 GPPFPTTKVALEGSGYGVTKAALNRLTTSVAAELNPHGIAVNALAPQAAIATPHLLESGTVPADRFEPLETMAEATLALATADPRTLSGRITRSIELLRELDRPVHTLDGTALVDGWQPQDLDAFIEHQ 290          
BLAST of mRNA_M-pyrifera_M_contig78134.18368.1 vs. uniprot
Match: A0A3D1GMZ3_9GAMM (Uncharacterized protein n=6 Tax=Halieaceae TaxID=1706372 RepID=A0A3D1GMZ3_9GAMM)

HSP 1 Score: 143 bits (360), Expect = 2.760e-39
Identity = 77/132 (58.33%), Postives = 91/132 (68.94%), Query Frame = 1
Query:    1 GPPFPTNKPAKAGFVYGAPKAALNRLTVAAASECEGQGIAVNALAPQAAIATPALVE---AGWVDSDMFEPLETMAEAALALCTGDPDVLTGRIAFSLQLLAELDRPVRDLHGEQLVEGWQPADLTAVIAAQ 387
            GPPF    PA+AG  YGA KAALNR+TV  A+E EG G+ VNAL PQAA+ TP L +   AG++D+D FEPLETM EAA  LCT     L GRI +SL+LL EL +PVRD  G +LV  WQPADL A +  Q
Sbjct:  165 GPPFGKTAPAQAGSAYGASKAALNRMTVGLAAEVEGTGVTVNALTPQAAVLTPELAQVRDAGYLDADFFEPLETMVEAATVLCTTRDPALHGRIVYSLELLLELGQPVRDFTGTELVTDWQPADLPAQLRRQ 296          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig78134.18368.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7K2CTK5_9ACTN1.190e-6782.95SDR family oxidoreductase n=6 Tax=Acidimicrobiia b... [more]
A0A6B0WP47_9ACTN1.190e-6279.84SDR family oxidoreductase n=6 Tax=Acidimicrobiacea... [more]
A0A7K1EBN4_9ACTN1.250e-6179.07SDR family NAD(P)-dependent oxidoreductase (Fragme... [more]
A0A6B1E9M9_9ACTN1.930e-6179.84SDR family oxidoreductase n=2 Tax=Acidimicrobiacea... [more]
A0A6J7N2W4_9ZZZZ5.300e-6178.29Unannotated protein n=1 Tax=freshwater metagenome ... [more]
A0A6I2ZV68_9ACTN4.980e-6078.29SDR family NAD(P)-dependent oxidoreductase n=1 Tax... [more]
A0A538D8Q1_9ACTN5.090e-5976.74SDR family oxidoreductase n=1 Tax=Actinomycetia ba... [more]
A0A538DJ86_9ACTN1.460e-4585.87SDR family oxidoreductase (Fragment) n=1 Tax=Actin... [more]
A0A7X6NZ68_9ACTN3.300e-4365.12SDR family oxidoreductase n=1 Tax=Actinomycetia ba... [more]
A0A3D1GMZ3_9GAMM2.760e-3958.33Uncharacterized protein n=6 Tax=Halieaceae TaxID=1... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig78134contigM-pyrifera_M_contig78134:604..990 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score141.7
Seed ortholog evalue2.3e-31
Seed eggNOG ortholog1121937.AUHJ01000009_gene1440
Hectar predicted targeting categoryother localisation
EggNOG free text desc.KR domain
EggNOG OGs1MUSQ@1224,1S0RF@1236,COG1028@1,COG1028@2
COG Functional cat.IQ
Best tax levelGammaproteobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size387
Cds size387
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816682.615798-CDS-M-pyrifera_M_contig78134:603..9901622816682.615798-CDS-M-pyrifera_M_contig78134:603..990Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78134 604..990 -
1692278117.066809-CDS-M-pyrifera_M_contig78134:603..9901692278117.066809-CDS-M-pyrifera_M_contig78134:603..990Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78134 604..990 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig78134.18368.1prot_M-pyrifera_M_contig78134.18368.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig78134 604..990 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig78134.18368.1

>prot_M-pyrifera_M_contig78134.18368.1 ID=prot_M-pyrifera_M_contig78134.18368.1|Name=mRNA_M-pyrifera_M_contig78134.18368.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=129bp
GPPFPTNKPAKAGFVYGAPKAALNRLTVAAASECEGQGIAVNALAPQAAI
ATPALVEAGWVDSDMFEPLETMAEAALALCTGDPDVLTGRIAFSLQLLAE
LDRPVRDLHGEQLVEGWQPADLTAVIAAQ
back to top

mRNA from alignment at M-pyrifera_M_contig78134:604..990-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig78134.18368.1 ID=mRNA_M-pyrifera_M_contig78134.18368.1|Name=mRNA_M-pyrifera_M_contig78134.18368.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=387bp|location=Sequence derived from alignment at M-pyrifera_M_contig78134:604..990- (Macrocystis pyrifera P11B4 male)
GGGCCGCCGTTCCCGACCAACAAACCGGCGAAGGCGGGATTCGTCTACGG CGCCCCCAAGGCCGCGCTCAACCGGCTGACCGTTGCGGCTGCGAGCGAGT GCGAAGGCCAGGGAATCGCCGTCAACGCCCTTGCCCCGCAGGCGGCGATC GCCACCCCCGCGCTCGTCGAAGCCGGCTGGGTTGACTCCGACATGTTCGA GCCGCTTGAAACGATGGCGGAAGCGGCGCTGGCCCTGTGTACCGGTGATC CCGACGTGCTCACCGGCCGGATCGCGTTCAGTCTCCAACTGCTCGCCGAG CTTGATCGACCGGTGCGCGACCTGCACGGCGAGCAGCTCGTGGAGGGGTG GCAGCCAGCCGACCTGACCGCGGTGATCGCGGCCCAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig78134:604..990-

>mRNA_M-pyrifera_M_contig78134.18368.1 ID=mRNA_M-pyrifera_M_contig78134.18368.1|Name=mRNA_M-pyrifera_M_contig78134.18368.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=774bp|location=Sequence derived from alignment at M-pyrifera_M_contig78134:604..990- (Macrocystis pyrifera P11B4 male)
GGGCCGCCGTTCCCGACCAACAAACCGGCGAAGGCGGGATTCGTCTACGG
CGCCCCCAAGGCCGCGCTCAACCGGCTGACCGTTGCGGCTGCGAGCGAGT
GCGAAGGCCAGGGAATCGCCGTCAACGCCCTTGCCCCGCAGGCGGCGATC
GCCACCCCCGCGCTCGTCGAAGCCGGCTGGGTTGACTCCGACATGTTCGA
GCCGCTTGAAACGATGGCGGAAGCGGCGCTGGCCCTGTGTACCGGTGATC
CCGACGTGCTCACCGGCCGGATCGCGTTCAGTCTCCAACTGCTCGCCGAG
CTTGATCGACCGGTGCGCGACCTGCACGGCGAGCAGCTCGTGGAGGGGTG
GCAGCCAGCCGACCTGACCGCGGTGATCGCGGCCCAGGGGCCGCCGTTCC
CGACCAACAAACCGGCGAAGGCGGGATTCGTCTACGGCGCCCCCAAGGCC
GCGCTCAACCGGCTGACCGTTGCGGCTGCGAGCGAGTGCGAAGGCCAGGG
AATCGCCGTCAACGCCCTTGCCCCGCAGGCGGCGATCGCCACCCCCGCGC
TCGTCGAAGCCGGCTGGGTTGACTCCGACATGTTCGAGCCGCTTGAAACG
ATGGCGGAAGCGGCGCTGGCCCTGTGTACCGGTGATCCCGACGTGCTCAC
CGGCCGGATCGCGTTCAGTCTCCAACTGCTCGCCGAGCTTGATCGACCGG
TGCGCGACCTGCACGGCGAGCAGCTCGTGGAGGGGTGGCAGCCAGCCGAC
CTGACCGCGGTGATCGCGGCCCAG
back to top