mRNA_M-pyrifera_M_contig78131.18366.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig78131.18366.1
Unique NamemRNA_M-pyrifera_M_contig78131.18366.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig78131.18366.1 vs. uniprot
Match: A0A821ICW5_9BILA (Hypothetical protein (Fragment) n=2 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A821ICW5_9BILA)

HSP 1 Score: 107 bits (266), Expect = 1.370e-24
Identity = 56/113 (49.56%), Postives = 79/113 (69.91%), Query Frame = 1 
Query:   13 MVATASHRRNLAAVAEATSTGQPLLLEGATGVGKSSCVTDAARLLRQPLLRFNLSSHVTIQDLIGRVQLAGS-RSSNSMLRWQDGPFTQAFAHGAWLLLDEVNLATSSVLQAI 348
            +V TA+ R N++ + E      P+LLEG+TGVGKS+ V +AA+   + L+R+N+SS VTI DL+G+V L     +  + L++ DGPFT AFAHG W+L DE+NLA  +VLQAI
Sbjct:  629 LVLTATARENVSKILEVLDDPIPILLEGSTGVGKSASVMEAAQQSGRTLVRYNMSSRVTIDDLLGKVSLVPDVETQTTSLKFVDGPFTTAFAHGYWILFDELNLAQDTVLQAI 741
[Close]
BLAST of mRNA_M-pyrifera_M_contig78131.18366.1 vs. uniprot
Match: A0A817GUW2_9BILA (Hypothetical protein n=2 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A817GUW2_9BILA)

HSP 1 Score: 107 bits (266), Expect = 1.440e-24
Identity = 56/113 (49.56%), Postives = 79/113 (69.91%), Query Frame = 1 
Query:   13 MVATASHRRNLAAVAEATSTGQPLLLEGATGVGKSSCVTDAARLLRQPLLRFNLSSHVTIQDLIGRVQLAGS-RSSNSMLRWQDGPFTQAFAHGAWLLLDEVNLATSSVLQAI 348
            +V TA+ R N++ + E      P+LLEG+TGVGKS+ V +AA+   + L+R+N+SS VTI DL+G+V L     +  + L++ DGPFT AFAHG W+L DE+NLA  +VLQAI
Sbjct:  629 LVLTATARENVSKILEVLDDPIPILLEGSTGVGKSASVMEAAQQSGRTLVRYNMSSRVTIDDLLGKVSLVPDVETQTTSLKFVDGPFTTAFAHGYWILFDELNLAQDTVLQAI 741
[Close]
BLAST of mRNA_M-pyrifera_M_contig78131.18366.1 vs. uniprot
Match: A0A817E6V0_9BILA (Hypothetical protein n=8 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A817E6V0_9BILA)

HSP 1 Score: 107 bits (266), Expect = 1.450e-24
Identity = 56/113 (49.56%), Postives = 79/113 (69.91%), Query Frame = 1 
Query:   13 MVATASHRRNLAAVAEATSTGQPLLLEGATGVGKSSCVTDAARLLRQPLLRFNLSSHVTIQDLIGRVQLAGS-RSSNSMLRWQDGPFTQAFAHGAWLLLDEVNLATSSVLQAI 348
            +V TA+ R N++ + E      P+LLEG+TGVGKS+ V +AA+   + L+R+N+SS VTI DL+G+V L     +  + L++ DGPFT AFAHG W+L DE+NLA  +VLQAI
Sbjct:  629 LVLTATARENVSKILEVLDDPIPILLEGSTGVGKSASVMEAAQQSGRTLVRYNMSSRVTIDDLLGKVSLVPDVETQTTSLKFVDGPFTTAFAHGYWILFDELNLAQDTVLQAI 741
[Close]
BLAST of mRNA_M-pyrifera_M_contig78131.18366.1 vs. uniprot
Match: A0A821PW80_9BILA (Hypothetical protein (Fragment) n=1 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A821PW80_9BILA)

HSP 1 Score: 99.8 bits (247), Expect = 3.260e-24
Identity = 51/113 (45.13%), Postives = 78/113 (69.03%), Query Frame = 1 
Query:   13 MVATASHRRNLAAVAEATSTGQPLLLEGATGVGKSSCVTDAARLLRQPLLRFNLSSHVTIQDLIGRVQLAGSRSSN-SMLRWQDGPFTQAFAHGAWLLLDEVNLATSSVLQAI 348
            +V T + R N+  + E  +   P+LLEG TGVGKS+ V +AA+   + L+R+N+SSH+TI DL+G+V L   + ++ +  ++  GPFT+AF +G W+L DE+NLA  +VLQAI
Sbjct:   21 LVLTDTTRENIFKILEVLNNPIPILLEGNTGVGKSATVMEAAQHAARTLIRYNMSSHITIDDLLGKVMLVFDKETHMTNFQFVQGPFTRAFVNGYWILFDELNLAQDTVLQAI 133
[Close]
BLAST of mRNA_M-pyrifera_M_contig78131.18366.1 vs. uniprot
Match: A0A814BFQ5_9BILA (Hypothetical protein n=2 Tax=Rotaria sordida TaxID=392033 RepID=A0A814BFQ5_9BILA)

HSP 1 Score: 105 bits (262), Expect = 5.020e-24
Identity = 56/115 (48.70%), Postives = 77/115 (66.96%), Query Frame = 1 
Query:    7 DGMVATASHRRNLAAVAEATSTGQPLLLEGATGVGKSSCVTDAARLLRQPLLRFNLSSHVTIQDLIGRVQLA-GSRSSNSMLRWQDGPFTQAFAHGAWLLLDEVNLATSSVLQAI 348
            D +V T + R N++ V E      P+LLEG+TGVGKS+ V +AA      L+R+N+SS VTI DL+G++ L    +S  + L++ DGPFT AF HG W+L DE+NLA  +VLQAI
Sbjct: 7238 DRLVLTDTARENVSKVLEVLDDPIPILLEGSTGVGKSASVMEAAHQTGHTLIRYNMSSRVTIDDLLGKIALVLDEQSQTTRLQFVDGPFTTAFTHGYWILFDELNLAQDTVLQAI 7352
[Close]
BLAST of mRNA_M-pyrifera_M_contig78131.18366.1 vs. uniprot
Match: A0A818MZM9_9BILA (Hypothetical protein n=2 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A818MZM9_9BILA)

HSP 1 Score: 104 bits (259), Expect = 1.250e-23
Identity = 56/115 (48.70%), Postives = 77/115 (66.96%), Query Frame = 1 
Query:    7 DGMVATASHRRNLAAVAEATSTGQPLLLEGATGVGKSSCVTDAARLLRQPLLRFNLSSHVTIQDLIGRVQLA-GSRSSNSMLRWQDGPFTQAFAHGAWLLLDEVNLATSSVLQAI 348
            D +V T + R N++ V E      P+LLEG+TGVGKS+ V +AA      L+R+N+SS VTI DL+G++ L    +S  + L++ DGPFT AF HG W+L DE+NLA  +VLQAI
Sbjct:  770 DRLVLTDTARENVSKVLEVLDDPIPILLEGSTGVGKSASVMEAAHQSGHILIRYNMSSRVTIDDLLGKIALVLDEQSQTTRLQFVDGPFTTAFTHGYWILFDELNLAQDTVLQAI 884
[Close]
BLAST of mRNA_M-pyrifera_M_contig78131.18366.1 vs. uniprot
Match: A0A821X708_9BILA (Hypothetical protein n=1 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A821X708_9BILA)

HSP 1 Score: 104 bits (259), Expect = 1.260e-23
Identity = 56/115 (48.70%), Postives = 77/115 (66.96%), Query Frame = 1 
Query:    7 DGMVATASHRRNLAAVAEATSTGQPLLLEGATGVGKSSCVTDAARLLRQPLLRFNLSSHVTIQDLIGRVQLA-GSRSSNSMLRWQDGPFTQAFAHGAWLLLDEVNLATSSVLQAI 348
            D +V T + R N++ V E      P+LLEG+TGVGKS+ V +AA      L+R+N+SS VTI DL+G++ L    +S  + L++ DGPFT AF HG W+L DE+NLA  +VLQAI
Sbjct:  770 DRLVLTDTARENVSKVLEVLDDPIPILLEGSTGVGKSASVMEAAHQSGHILIRYNMSSRVTIDDLLGKIALVLDEQSQTTRLQFVDGPFTTAFTHGYWILFDELNLAQDTVLQAI 884
[Close]
BLAST of mRNA_M-pyrifera_M_contig78131.18366.1 vs. uniprot
Match: A0A818TLQ4_9BILA (Hypothetical protein n=4 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A818TLQ4_9BILA)

HSP 1 Score: 104 bits (259), Expect = 1.260e-23
Identity = 56/115 (48.70%), Postives = 77/115 (66.96%), Query Frame = 1 
Query:    7 DGMVATASHRRNLAAVAEATSTGQPLLLEGATGVGKSSCVTDAARLLRQPLLRFNLSSHVTIQDLIGRVQLA-GSRSSNSMLRWQDGPFTQAFAHGAWLLLDEVNLATSSVLQAI 348
            D +V T + R N++ V E      P+LLEG+TGVGKS+ V +AA      L+R+N+SS VTI DL+G++ L    +S  + L++ DGPFT AF HG W+L DE+NLA  +VLQAI
Sbjct:  770 DRLVLTDTARENVSKVLEVLDDPIPILLEGSTGVGKSASVMEAAHQSGHILIRYNMSSRVTIDDLLGKIALVLDEQSQTTRLQFVDGPFTTAFTHGYWILFDELNLAQDTVLQAI 884
[Close]
BLAST of mRNA_M-pyrifera_M_contig78131.18366.1 vs. uniprot
Match: A0A820XNM4_9BILA (Hypothetical protein n=3 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A820XNM4_9BILA)

HSP 1 Score: 104 bits (259), Expect = 1.270e-23
Identity = 56/115 (48.70%), Postives = 77/115 (66.96%), Query Frame = 1 
Query:    7 DGMVATASHRRNLAAVAEATSTGQPLLLEGATGVGKSSCVTDAARLLRQPLLRFNLSSHVTIQDLIGRVQLA-GSRSSNSMLRWQDGPFTQAFAHGAWLLLDEVNLATSSVLQAI 348
            D +V T + R N++ V E      P+LLEG+TGVGKS+ V +AA      L+R+N+SS VTI DL+G++ L    +S  + L++ DGPFT AF HG W+L DE+NLA  +VLQAI
Sbjct:  770 DRLVLTDTARENVSKVLEVLDDPIPILLEGSTGVGKSASVMEAAHQSGHILIRYNMSSRVTIDDLLGKIALVLDEQSQTTRLQFVDGPFTTAFTHGYWILFDELNLAQDTVLQAI 884
[Close]
BLAST of mRNA_M-pyrifera_M_contig78131.18366.1 vs. uniprot
Match: A0A818RG62_9BILA (Hypothetical protein n=5 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A818RG62_9BILA)

HSP 1 Score: 104 bits (259), Expect = 1.270e-23
Identity = 56/115 (48.70%), Postives = 77/115 (66.96%), Query Frame = 1 
Query:    7 DGMVATASHRRNLAAVAEATSTGQPLLLEGATGVGKSSCVTDAARLLRQPLLRFNLSSHVTIQDLIGRVQLA-GSRSSNSMLRWQDGPFTQAFAHGAWLLLDEVNLATSSVLQAI 348
            D +V T + R N++ V E      P+LLEG+TGVGKS+ V +AA      L+R+N+SS VTI DL+G++ L    +S  + L++ DGPFT AF HG W+L DE+NLA  +VLQAI
Sbjct:  759 DRLVLTDTARENVSKVLEVLDDPIPILLEGSTGVGKSASVMEAAHQSGHILIRYNMSSRVTIDDLLGKIALVLDEQSQTTRLQFVDGPFTTAFTHGYWILFDELNLAQDTVLQAI 873
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig78131.18366.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A821ICW5_9BILA1.370e-2449.56Hypothetical protein (Fragment) n=2 Tax=Rotaria sp... [more]
A0A817GUW2_9BILA1.440e-2449.56Hypothetical protein n=2 Tax=Rotaria sp. Silwood2 ... [more]
A0A817E6V0_9BILA1.450e-2449.56Hypothetical protein n=8 Tax=Rotaria sp. Silwood2 ... [more]
A0A821PW80_9BILA3.260e-2445.13Hypothetical protein (Fragment) n=1 Tax=Rotaria sp... [more]
A0A814BFQ5_9BILA5.020e-2448.70Hypothetical protein n=2 Tax=Rotaria sordida TaxID... [more]
A0A818MZM9_9BILA1.250e-2348.70Hypothetical protein n=2 Tax=Rotaria sp. Silwood1 ... [more]
A0A821X708_9BILA1.260e-2348.70Hypothetical protein n=1 Tax=Rotaria sp. Silwood1 ... [more]
A0A818TLQ4_9BILA1.260e-2348.70Hypothetical protein n=4 Tax=Rotaria sp. Silwood1 ... [more]
A0A820XNM4_9BILA1.270e-2348.70Hypothetical protein n=3 Tax=Rotaria sp. Silwood1 ... [more]
A0A818RG62_9BILA1.270e-2348.70Hypothetical protein n=5 Tax=Rotaria sp. Silwood1 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig78131contigM-pyrifera_M_contig78131:2..349 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.4
Seed ortholog evalue1.2e-15
Seed eggNOG ortholog3055.EDP07764
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ATPase activity
EggNOG OGsCOG5271@1,KOG1808@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size348
Cds size336
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816682.5326788-CDS-M-pyrifera_M_contig78131:1..3371622816682.5326788-CDS-M-pyrifera_M_contig78131:1..337Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78131 2..337 -
1692278117.0281935-CDS-M-pyrifera_M_contig78131:1..3371692278117.0281935-CDS-M-pyrifera_M_contig78131:1..337Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78131 2..337 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816682.5452523-UTR-M-pyrifera_M_contig78131:337..3491622816682.5452523-UTR-M-pyrifera_M_contig78131:337..349Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig78131 338..349 -
1692278117.0379868-UTR-M-pyrifera_M_contig78131:337..3491692278117.0379868-UTR-M-pyrifera_M_contig78131:337..349Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig78131 338..349 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig78131.18366.1prot_M-pyrifera_M_contig78131.18366.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig78131 2..337 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig78131.18366.1

>prot_M-pyrifera_M_contig78131.18366.1 ID=prot_M-pyrifera_M_contig78131.18366.1|Name=mRNA_M-pyrifera_M_contig78131.18366.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=112bp
MVATASHRRNLAAVAEATSTGQPLLLEGATGVGKSSCVTDAARLLRQPLL
RFNLSSHVTIQDLIGRVQLAGSRSSNSMLRWQDGPFTQAFAHGAWLLLDE
VNLATSSVLQAI
back to top

mRNA from alignment at M-pyrifera_M_contig78131:2..349-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig78131.18366.1 ID=mRNA_M-pyrifera_M_contig78131.18366.1|Name=mRNA_M-pyrifera_M_contig78131.18366.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=348bp|location=Sequence derived from alignment at M-pyrifera_M_contig78131:2..349- (Macrocystis pyrifera P11B4 male)
GACGGCGATGGCATGGTGGCCACAGCCTCTCACCGCCGCAACCTCGCCGC
AGTGGCCGAAGCTACGTCAACAGGCCAGCCCTTGCTGCTGGAGGGTGCGA
CTGGAGTGGGCAAGAGCTCCTGCGTCACTGATGCGGCCAGACTCCTGCGC
CAGCCCCTGTTGCGCTTCAACCTCTCTTCCCACGTCACCATCCAGGACCT
CATCGGCAGGGTGCAGCTGGCTGGGTCACGCAGCAGCAACTCCATGCTGC
GCTGGCAGGACGGGCCGTTCACGCAGGCGTTCGCCCATGGCGCCTGGCTG
CTGCTCGATGAGGTCAACCTCGCAACGAGCAGCGTCCTGCAGGCCATC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig78131:2..349-

>mRNA_M-pyrifera_M_contig78131.18366.1 ID=mRNA_M-pyrifera_M_contig78131.18366.1|Name=mRNA_M-pyrifera_M_contig78131.18366.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=672bp|location=Sequence derived from alignment at M-pyrifera_M_contig78131:2..349- (Macrocystis pyrifera P11B4 male)
ATGGTGGCCACAGCCTCTCACCGCCGCAACCTCGCCGCAGTGGCCGAAGC
TACGTCAACAGGCCAGCCCTTGCTGCTGGAGGGTGCGACTGGAGTGGGCA
AGAGCTCCTGCGTCACTGATGCGGCCAGACTCCTGCGCCAGCCCCTGTTG
CGCTTCAACCTCTCTTCCCACGTCACCATCCAGGACCTCATCGGCAGGGT
GCAGCTGGCTGGGTCACGCAGCAGCAACTCCATGCTGCGCTGGCAGGACG
GGCCGTTCACGCAGGCGTTCGCCCATGGCGCCTGGCTGCTGCTCGATGAG
GTCAACCTCGCAACGAGCAGCGTCCTGCAGGCCATCATGGTGGCCACAGC
CTCTCACCGCCGCAACCTCGCCGCAGTGGCCGAAGCTACGTCAACAGGCC
AGCCCTTGCTGCTGGAGGGTGCGACTGGAGTGGGCAAGAGCTCCTGCGTC
ACTGATGCGGCCAGACTCCTGCGCCAGCCCCTGTTGCGCTTCAACCTCTC
TTCCCACGTCACCATCCAGGACCTCATCGGCAGGGTGCAGCTGGCTGGGT
CACGCAGCAGCAACTCCATGCTGCGCTGGCAGGACGGGCCGTTCACGCAG
GCGTTCGCCCATGGCGCCTGGCTGCTGCTCGATGAGGTCAACCTCGCAAC
GAGCAGCGTCCTGCAGGCCATC
back to top