mRNA_M-pyrifera_M_contig78130.18365.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig78130.18365.1
Unique NamemRNA_M-pyrifera_M_contig78130.18365.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig78130.18365.1 vs. uniprot
Match: A0A059CDA2_EUCGR (Eukaryotic translation initiation factor 3 subunit D n=7 Tax=cellular organisms TaxID=131567 RepID=A0A059CDA2_EUCGR)

HSP 1 Score: 258 bits (658), Expect = 1.360e-78
Identity = 146/293 (49.83%), Postives = 196/293 (66.89%), Query Frame = 1 
Query:    7 CGELNYFDKAYASISMKHNMRLAPASPEEEEPFFNVTTSDDPIIRQLATEGKGTVFCTDALLALLVASPRSVYSWDIVIQRVGSKLFLDKRDNGAGTLAEMLTVYETAPDSPDPENKDAFNRPTELSQESTMINQRFIQQVQMTDMDSLRFDVENP--EEFDTQYPVAYRYRRFKVGEHL-LVARCEIDAVRMTSKKNNLFLSVRALNEYHYEKNVRDKSQSKLGVVDWRLKLESQRGAVVATELKNNSNKLSRWASQALIAGTDQFILGFVARAHPKDNNNNVTLAPQQYFP 876
            CG L Y+D+ Y  ++ K+  RL          FF VTT+DDP+IR+LA E K TVF TDA+L+ L+ +PRSVYSWDIVIQRVG+KLF DKRD   G+  ++L+V+ET+ + P PE KD  N    LS E+  +NQ F QQV + D + + FD  NP   E +    VAYRYRR+K+ + + L+ARCE+ +V   +K+ + FL++ ALNE+           SK   VDWR KLE+QRGAV+ATELKNN+NKL++W +QAL+A  D   LGFV+R HP+D+ N+V LA QQY P
Sbjct:  195 CGALEYYDRTYDRVTPKNERRLERFKNRN---FFKVTTTDDPVIRRLANEDKATVFATDAILSALMCAPRSVYSWDIVIQRVGNKLFFDKRD---GSQLDLLSVHETSQE-PLPEAKDDINSAYSLSVEAAYVNQNFSQQVLIRDGNKVTFDEPNPFANEGEEVASVAYRYRRWKLDDDMHLIARCEVQSVNEINKQRS-FLTLNALNEF----------DSKYSGVDWRQKLETQRGAVLATELKNNANKLAKWTAQALLASADYMKLGFVSRVHPRDHFNHVILAVQQYKP 469
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BLAST of mRNA_M-pyrifera_M_contig78130.18365.1 vs. uniprot
Match: A0A388KZH8_CHABU (Eukaryotic translation initiation factor 3 subunit D n=2 Tax=Chara braunii TaxID=69332 RepID=A0A388KZH8_CHABU)

HSP 1 Score: 252 bits (643), Expect = 1.500e-76
Identity = 148/295 (50.17%), Postives = 192/295 (65.08%), Query Frame = 1 
Query:    7 CGELNYFDKAYASISMKHNMRLAPASPEEEEPFFNVTTSDDPIIRQLATEGKGTVFCTDALLALLVASPRSVYSWDIVIQRVGSKLFLDKRDNGAGTLAEMLTVYETAPDSPDPENKDAFNRPTELSQESTMINQRFIQQVQMTDMDSLRFDVENPEEF----DTQYPVAYRYRRFKVGEHL-LVARCEIDAVRMTSKKNNLFLSVRALNEYHYEKNVRDKSQSKLGVVDWRLKLESQRGAVVATELKNNSNKLSRWASQALIAGTDQFILGFVARAHPKDNNNNVTLAPQQYFP 876
            CG L Y+DKA   I+ K    L  A   E + FF VTT+DDPIIR+LA+E  G+VF TDA+L+ L+ + RSVYSWD+V+QRVG+KLF DKRD       ++LTV ET+ + P PE+KD+ N  T LS+E+T INQ F QQ  + D    RF  E P  F    D     AYRYR++K+   + LVARCE+DAV    K   + L+V+ALNE+           SK   VDWR KLE+QRGAV+ATELKNN+NKL++W +QAL+AG +Q  LG+V+R HP+D  N+V L  Q Y P
Sbjct:  187 CGALEYYDKAMDRITPKTERSLERA---ENKQFFRVTTTDDPIIRRLASEDIGSVFATDAILSTLMCATRSVYSWDVVVQRVGTKLFFDKRDGAF----DLLTVNETSQEPP-PEDKDSINSVTALSEEATFINQNFSQQALLKD--GRRFTFEEPNPFAAPEDEVASAAYRYRKWKLDNDITLVARCEVDAVSEV-KGQEVLLTVKALNEF----------DSKASGVDWRQKLENQRGAVLATELKNNANKLAKWTTQALLAGAEQMKLGYVSRVHPRDKYNHVILGIQGYKP 460
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BLAST of mRNA_M-pyrifera_M_contig78130.18365.1 vs. uniprot
Match: A0A6P4BU22_ARADU (Eukaryotic translation initiation factor 3 subunit D n=3 Tax=50 kb inversion clade TaxID=2231393 RepID=A0A6P4BU22_ARADU)

HSP 1 Score: 251 bits (640), Expect = 2.120e-76
Identity = 145/293 (49.49%), Postives = 191/293 (65.19%), Query Frame = 1 
Query:    7 CGELNYFDKAYASISMKHNMRLAPASPEEEEPFFNVTTSDDPIIRQLATEGKGTVFCTDALLALLVASPRSVYSWDIVIQRVGSKLFLDKRDNGAGTLAEMLTVYETAPDSPDPENKDAFNRPTELSQESTMINQRFIQQVQMTDMDSLRFDVENP--EEFDTQYPVAYRYRRFKVGEHL-LVARCEIDAVRMTSKKNNLFLSVRALNEYHYEKNVRDKSQSKLGVVDWRLKLESQRGAVVATELKNNSNKLSRWASQALIAGTDQFILGFVARAHPKDNNNNVTLAPQQYFP 876
            CG L Y+D+ Y  I+ K+  RL          FF VTT+DDP+IR+LA E K TVF TD +L+ L+ +PRSVYSWDIV+QRVG+KLF DKRD   G+  ++L+V+ET+ + P PE KD  N    LS E+  INQ F QQV + D + + FD  NP   E +    VAYRYRR+K+   + LVARCE+ +V +   KN  FL++ ALNE+            K   VDWR KLE+QRGAV+ATELKNN+NKL++W +QAL+AG D   LG+V+R HP+D+ N+V LA   Y P
Sbjct:  149 CGALEYYDRTYDRITPKNERRLERFKNRN---FFKVTTTDDPVIRRLANEDKATVFATDTILSTLMCAPRSVYSWDIVVQRVGNKLFFDKRD---GSQLDLLSVHETSQE-PLPEAKDDINSAHSLSVEAAYINQNFSQQVLVRDGNKVSFDEPNPFANEGEEVASVAYRYRRWKLDNDMYLVARCEVHSV-LELNKNKSFLTLNALNEF----------DPKYSGVDWRQKLETQRGAVLATELKNNANKLAKWTAQALLAGADMMKLGYVSRIHPRDHFNHVILAVVGYKP 423
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BLAST of mRNA_M-pyrifera_M_contig78130.18365.1 vs. uniprot
Match: D8SU76_SELML (Eukaryotic translation initiation factor 3 subunit D n=6 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8SU76_SELML)

HSP 1 Score: 249 bits (636), Expect = 3.620e-76
Identity = 145/293 (49.49%), Postives = 194/293 (66.21%), Query Frame = 1 
Query:    7 CGELNYFDKAYASISMKHNMRLAPASPEEEEPFFNVTTSDDPIIRQLATEGKGTVFCTDALLALLVASPRSVYSWDIVIQRVGSKLFLDKRDNGAGTLAEMLTVYETAPDSPDPENKDAFNRPTELSQESTMINQRFIQQVQMTDMDSLRFDVENPEEFDTQYP--VAYRYRRFKVG-EHLLVARCEIDAVRMTSKKNNLFLSVRALNEYHYEKNVRDKSQSKLGVVDWRLKLESQRGAVVATELKNNSNKLSRWASQALIAGTDQFILGFVARAHPKDNNNNVTLAPQQYFP 876
            CG L Y+DKAY  ++ K + RL          FF VTTSDDP+IR+LA+E K TVF TD +L+ L+ +PRSVYSWDIV+QRVG+KLF DKRDN   +  ++L+V ET  + P PE K+  N    LS E+  INQ F QQV + D   ++F  +NP   D++    VAYRYRR+K+  E  LVARCE+ +V M SK  ++FL++ ALNE+            KL  VDWR KLE+QRGAV+ATELKNN+NKL++W +QAL+A  D   LG+V+R HP+D+ N+  L+ Q + P
Sbjct:  120 CGALEYYDKAYDRVTPKTDRRLERFKNMN---FFKVTTSDDPVIRRLASEDKATVFATDNILSTLMCAPRSVYSWDIVVQRVGNKLFFDKRDN---SQLDLLSVNETCQE-PLPEAKEDINSAHSLSVEAAYINQNFSQQVLVRDGGKVQFQEQNPFAGDSEVAASVAYRYRRWKLDDETFLVARCELHSV-MESKNGSVFLTLNALNEF----------DPKLSGVDWRQKLETQRGAVLATELKNNANKLAKWTAQALLASADVMKLGYVSRIHPRDHYNHTVLSVQGHKP 394
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BLAST of mRNA_M-pyrifera_M_contig78130.18365.1 vs. uniprot
Match: A9SLQ4_PHYPA (Predicted protein (Fragment) n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9SLQ4_PHYPA)

HSP 1 Score: 246 bits (627), Expect = 5.110e-76
Identity = 143/295 (48.47%), Postives = 188/295 (63.73%), Query Frame = 1 
Query:    7 CGELNYFDKAYASISMKHNMRLAPASPEEEEPFFNVTTSDDPIIRQLATEGK--GTVFCTDALLALLVASPRSVYSWDIVIQRVGSKLFLDKRDNGAGTLAEMLTVYETAPDSPDPENKDAFNRPTELSQESTMINQRFIQQVQMTDMDSLRFDVENP--EEFDTQYPVAYRYRRFKVGEHL-LVARCEIDAVRMTSKKNNLFLSVRALNEYHYEKNVRDKSQSKLGVVDWRLKLESQRGAVVATELKNNSNKLSRWASQALIAGTDQFILGFVARAHPKDNNNNVTLAPQQYFP 876
            CG L Y+DK +  ++ K    L      E   F+ VTT+DDP+IR+L  E +  GTVF TD +LA L+ SPRS+YSWDIVIQ+VG+KLFLDKRD       ++LTVYETA + P PE KD+ N    LSQE+T +NQ F QQV   +     F   NP   E +    VAYRYR++K+ E   LVARCE+  V    K + + L++ ALNE+           S++  VDWR K+E+QRGAV+ATELKNN+NKL++W +QAL++G DQ  LG+V+R HPKDN N+  L  Q Y P
Sbjct:   38 CGSLEYYDKTFDRVTPKTEKALERF---ENRTFYKVTTTDDPVIRRLLLEDENVGTVFATDTILATLMCSPRSMYSWDIVIQKVGNKLFLDKRD----ASFDLLTVYETAQE-PIPEEKDSINSVHSLSQEATFVNQNFSQQVLQKEGKKFEFKEPNPFASENEEVAAVAYRYRKWKLDEETTLVARCELHGVADV-KGSEILLTINALNEF----------DSRITGVDWRQKIENQRGAVLATELKNNANKLAKWTAQALLSGADQMKLGYVSRVHPKDNYNHAVLTMQGYKP 313
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BLAST of mRNA_M-pyrifera_M_contig78130.18365.1 vs. uniprot
Match: A9NUG7_PICSI (NARG2_C domain-containing protein n=1 Tax=Picea sitchensis TaxID=3332 RepID=A9NUG7_PICSI)

HSP 1 Score: 246 bits (628), Expect = 7.370e-76
Identity = 143/295 (48.47%), Postives = 193/295 (65.42%), Query Frame = 1 
Query:    1 VECGELNYFDKAYASISMKHNMRLAPASPEEEEPFFNVTTSDDPIIRQLATEGKGTVFCTDALLALLVASPRSVYSWDIVIQRVGSKLFLDKRDNGAGTLAEMLTVYETAPDSPDPENKDAFNRPTELSQESTMINQRFIQQVQMTDMDSLRFDVENP--EEFDTQYPVAYRYRRFKVGEHL-LVARCEIDAVRMTSKKNNLFLSVRALNEYHYEKNVRDKSQSKLGVVDWRLKLESQRGAVVATELKNNSNKLSRWASQALIAGTDQFILGFVARAHPKDNNNNVTLAPQQYFP 876
            V CG L Y+D+ Y  ++ K + RL          FF VTT+DDP+IR+LA+E K TVF TD +LA L+ SPRSVYSWDIV+Q+VG+KLF DKRD   G+  ++L+V ET+ + P PE K+  N    LS E+  INQ F QQV + D + + F+  NP   E +    VAYRYRR+K+ E + LVARCE+ +V +  +    FL++ ALNE+           SK   VDWR KLE+QRGAV+ATELKNN+NKL++W +QAL+A  D   LG+V+R HP+D+ N+V L+ Q Y P
Sbjct:   44 VMCGALEYYDRVYDRVTPKSDKRLERFKNRN---FFKVTTTDDPVIRRLASEDKATVFATDTILATLMCSPRSVYSWDIVVQKVGNKLFFDKRD---GSQLDLLSVNETSQE-PLPEAKEDINSAHSLSVEAAYINQNFSQQVLIRDGNKVEFEEPNPFASEGEEVASVAYRYRRWKLDEDVALVARCEVHSV-LDLRGQTQFLTLNALNEF----------DSKYSGVDWRQKLETQRGAVLATELKNNANKLAKWTAQALLASADVMKLGYVSRIHPRDHFNHVILSVQGYKP 320
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BLAST of mRNA_M-pyrifera_M_contig78130.18365.1 vs. uniprot
Match: A0A067GKL0_CITSI (Eukaryotic translation initiation factor 3 subunit D n=7 Tax=Sapindales TaxID=41937 RepID=A0A067GKL0_CITSI)

HSP 1 Score: 251 bits (640), Expect = 7.560e-76
Identity = 145/293 (49.49%), Postives = 194/293 (66.21%), Query Frame = 1 
Query:    7 CGELNYFDKAYASISMKHNMRLAPASPEEEEPFFNVTTSDDPIIRQLATEGKGTVFCTDALLALLVASPRSVYSWDIVIQRVGSKLFLDKRDNGAGTLAEMLTVYETAPDSPDPENKDAFNRPTELSQESTMINQRFIQQVQMTDMDSLRFDVENP--EEFDTQYPVAYRYRRFKVGEHL-LVARCEIDAVRMTSKKNNLFLSVRALNEYHYEKNVRDKSQSKLGVVDWRLKLESQRGAVVATELKNNSNKLSRWASQALIAGTDQFILGFVARAHPKDNNNNVTLAPQQYFP 876
            CG L Y+D++Y  ++ K+  RL          FF VTT+DDP+IR+LA E K TVF TDA+LA L+ +PRSVYSWDIVIQRVG+KLF DKRD   G+  ++L+V+ET+ + P PE KD  N    LS E+  INQ F QQV + D + L FD  NP   E +    VAYRYRR+K+ + + LVARCE+ +V   + + + FL++ ALNE+           SK   VDWR KLE+QRGAV+ATELKNN+NKL++W +Q+L+A  D   LG+V+R HP+D+ N+V LA   Y P
Sbjct:  202 CGSLEYYDRSYDRVTPKNERRLERFKYRN---FFKVTTTDDPVIRRLANEDKATVFATDAILATLMCAPRSVYSWDIVIQRVGNKLFFDKRD---GSQLDLLSVHETSQE-PLPEAKDDINSAYSLSVEAAYINQNFSQQVLVRDGNKLTFDEPNPFANEGEEVASVAYRYRRWKLDDDMYLVARCEVQSVVDVNNQRS-FLTLNALNEF----------DSKYSGVDWRQKLETQRGAVLATELKNNANKLAKWTAQSLLASADLMKLGYVSRVHPRDHFNHVILAVMGYKP 476
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BLAST of mRNA_M-pyrifera_M_contig78130.18365.1 vs. uniprot
Match: A0A7J9EPS6_9ROSI (Eukaryotic translation initiation factor 3 subunit D n=3 Tax=Gossypium TaxID=3633 RepID=A0A7J9EPS6_9ROSI)

HSP 1 Score: 248 bits (633), Expect = 1.040e-75
Identity = 143/293 (48.81%), Postives = 191/293 (65.19%), Query Frame = 1 
Query:    7 CGELNYFDKAYASISMKHNMRLAPASPEEEEPFFNVTTSDDPIIRQLATEGKGTVFCTDALLALLVASPRSVYSWDIVIQRVGSKLFLDKRDNGAGTLAEMLTVYETAPDSPDPENKDAFNRPTELSQESTMINQRFIQQVQMTDMDSLRFDVENP--EEFDTQYPVAYRYRRFKV-GEHLLVARCEIDAVRMTSKKNNLFLSVRALNEYHYEKNVRDKSQSKLGVVDWRLKLESQRGAVVATELKNNSNKLSRWASQALIAGTDQFILGFVARAHPKDNNNNVTLAPQQYFP 876
            CG L Y+D+++  I+ K+  RL          FF VTT+DDP+IR+LA E K TVF TD +LA L+ +PRSVYSWDIV+QRVG+KLF DKRD   G+  ++L+V+ET+ + P PE KD  N    LS E+  INQ F QQV + D + + FD  NP   E D    VAYRYRR+K+ G+  LVARCE+ +V   + KN+ F+++ ALNE+            K   VDWR KLE+QRGAV+ATELKNN+NKL++W +QA++A  D   LG+V R HP+D+ N+V L    Y P
Sbjct:  119 CGALEYYDRSFDRITPKNERRLERFKNRN---FFKVTTTDDPVIRRLANEDKATVFATDTILATLMCAPRSVYSWDIVVQRVGNKLFFDKRD---GSQLDLLSVHETSQE-PLPEAKDDINSAYSLSVEAAYINQNFSQQVLVRDGNKVSFDEPNPFANEGDEVASVAYRYRRWKLDGDMYLVARCEVQSVVEVNNKNS-FVTLNALNEF----------DPKYSGVDWRQKLETQRGAVLATELKNNANKLAKWTAQAILASADLMKLGYVTRVHPRDHFNHVILGVVGYKP 393
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BLAST of mRNA_M-pyrifera_M_contig78130.18365.1 vs. uniprot
Match: A0A2I4H8F1_JUGRE (Eukaryotic translation initiation factor 3 subunit D n=9 Tax=fabids TaxID=91835 RepID=A0A2I4H8F1_JUGRE)

HSP 1 Score: 250 bits (638), Expect = 1.330e-75
Identity = 144/293 (49.15%), Postives = 193/293 (65.87%), Query Frame = 1 
Query:    7 CGELNYFDKAYASISMKHNMRLAPASPEEEEPFFNVTTSDDPIIRQLATEGKGTVFCTDALLALLVASPRSVYSWDIVIQRVGSKLFLDKRDNGAGTLAEMLTVYETAPDSPDPENKDAFNRPTELSQESTMINQRFIQQVQMTDMDSLRFDVENP--EEFDTQYPVAYRYRRFKVGEHL-LVARCEIDAVRMTSKKNNLFLSVRALNEYHYEKNVRDKSQSKLGVVDWRLKLESQRGAVVATELKNNSNKLSRWASQALIAGTDQFILGFVARAHPKDNNNNVTLAPQQYFP 876
            CG L ++D++Y  ++ K+  RL          FF VTT+DDP+IR+LA E K TVF TDA+L+ L+ SPRSVYSWDIV+QRVG+KLF DKRD   G+  ++L+V+ET+ + P PE KD  N    L  E+  INQ F QQV + D + + FD  NP   E +    VAYRYRR+K+   + LVARCE+ +V   +K+ + FL++ ALNE+            K   VDWR KLE+QRGAV+ATELKNN+NKL++W SQAL+AG D   LG+V+R HP+D+ N+V LA   Y P
Sbjct:  197 CGALEFYDRSYDRVTPKNERRLERFKNRN---FFKVTTTDDPVIRRLANEDKATVFATDAILSTLMCSPRSVYSWDIVVQRVGNKLFFDKRD---GSQLDLLSVHETSQE-PLPEAKDDINSAHSLGLEAAYINQNFSQQVLIRDGNKVTFDESNPFANEGEEVASVAYRYRRWKLDNDMYLVARCEVQSVVEVNKQRS-FLTLNALNEF----------DPKYSGVDWRQKLETQRGAVLATELKNNANKLAKWTSQALLAGADLMKLGYVSRVHPRDHFNHVILAVVGYKP 471
[Close]
BLAST of mRNA_M-pyrifera_M_contig78130.18365.1 vs. uniprot
Match: A0A0B0MST7_GOSAR (Eukaryotic translation initiation factor 3 subunit D n=1 Tax=Gossypium arboreum TaxID=29729 RepID=A0A0B0MST7_GOSAR)

HSP 1 Score: 249 bits (635), Expect = 2.160e-75
Identity = 143/295 (48.47%), Postives = 192/295 (65.08%), Query Frame = 1 
Query:    1 VECGELNYFDKAYASISMKHNMRLAPASPEEEEPFFNVTTSDDPIIRQLATEGKGTVFCTDALLALLVASPRSVYSWDIVIQRVGSKLFLDKRDNGAGTLAEMLTVYETAPDSPDPENKDAFNRPTELSQESTMINQRFIQQVQMTDMDSLRFDVENP--EEFDTQYPVAYRYRRFKV-GEHLLVARCEIDAVRMTSKKNNLFLSVRALNEYHYEKNVRDKSQSKLGVVDWRLKLESQRGAVVATELKNNSNKLSRWASQALIAGTDQFILGFVARAHPKDNNNNVTLAPQQYFP 876
            + CG L Y+D+++  I+ K+  RL          FF VTT+DDP+IR+LA E K TVF TD +LA L+ +PRSVYSWDIV+QRVG+KLF DKRD   G+  ++L+V+ET+ + P PE KD  N    LS E+  INQ F QQV + D + + FD  NP   E D    VAYRYRR+K+ G+  LVARCE+ +V   + KN+ F+++ ALNE+            K   VDWR KLE+QRGAV+ATELKNN+NKL++W +QA++A  D   LG+V R HP+D+ N+V L    Y P
Sbjct:  206 LHCGALEYYDRSFDRITPKNERRLERFKNRN---FFKVTTTDDPVIRRLANEDKATVFATDTILATLMCAPRSVYSWDIVVQRVGNKLFFDKRD---GSQLDLLSVHETSQE-PLPEAKDDINSAYSLSVEAAYINQNFSQQVLIRDGNKVSFDEPNPFANEGDEVASVAYRYRRWKLDGDMYLVARCEVQSVVEVNNKNS-FVTLNALNEF----------DPKYSGVDWRQKLETQRGAVLATELKNNANKLAKWTAQAILASADLMKLGYVTRVHPRDHFNHVILGVVGYKP 482
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig78130.18365.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A059CDA2_EUCGR1.360e-7849.83Eukaryotic translation initiation factor 3 subunit... [more]
A0A388KZH8_CHABU1.500e-7650.17Eukaryotic translation initiation factor 3 subunit... [more]
A0A6P4BU22_ARADU2.120e-7649.49Eukaryotic translation initiation factor 3 subunit... [more]
D8SU76_SELML3.620e-7649.49Eukaryotic translation initiation factor 3 subunit... [more]
A9SLQ4_PHYPA5.110e-7648.47Predicted protein (Fragment) n=1 Tax=Physcomitrium... [more]
A9NUG7_PICSI7.370e-7648.47NARG2_C domain-containing protein n=1 Tax=Picea si... [more]
A0A067GKL0_CITSI7.560e-7649.49Eukaryotic translation initiation factor 3 subunit... [more]
A0A7J9EPS6_9ROSI1.040e-7548.81Eukaryotic translation initiation factor 3 subunit... [more]
A0A2I4H8F1_JUGRE1.330e-7549.15Eukaryotic translation initiation factor 3 subunit... [more]
A0A0B0MST7_GOSAR2.160e-7548.47Eukaryotic translation initiation factor 3 subunit... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig78130contigM-pyrifera_M_contig78130:65..989 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score262.3
Seed ortholog evalue2.7e-67
Seed eggNOG ortholog71139.XP_010052300.1
KEGG koko:K03251
KEGG Pathwayko03013,map03013
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0003824,GO:0004721,GO:0004722,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0005852,GO:0005911,GO:0006412,GO:0006413,GO:0006464,GO:0006470,GO:0006518,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006913,GO:0007154,GO:0007165,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009416,GO:0009506,GO:0009628,GO:0009639,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010017,GO:0010019,GO:0010035,GO:0010038,GO:0010380,GO:0010467,GO:0012505,GO:0016020,GO:0016021,GO:0016311,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016791,GO:0019222,GO:0019538,GO:0023052,GO:0030054,GO:0030176,GO:0031224,GO:0031227,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0031984,GO:0032991,GO:0034641,GO:0034645,GO:0036211,GO:0042175,GO:0042221,GO:0042578,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046686,GO:0046906,GO:0046907,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051169,GO:0051171,GO:0051172,GO:0051179,GO:0051193,GO:0051195,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0055044,GO:0065007,GO:0070013,GO:0071214,GO:0071478,GO:0071482,GO:0071489,GO:0071704,GO:0090056,GO:0097159,GO:0098827,GO:0104004,GO:0140096,GO:1901363,GO:1901401,GO:1901402,GO:1901463,GO:1901464,GO:1901564,GO:1901566,GO:1901576,GO:1902325
EggNOG free text desc.mRNA cap-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. In the eIF-3 complex, eif3d specifically recognizes and binds the 7-methylguanosine cap of a subset of mRNAs
EggNOG OGs37KXQ@33090,3GDMM@35493,KOG2479@1,KOG2479@2759
COG Functional cat.J
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03012
Exons2
Model size876
Cds size876
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816682.488607-CDS-M-pyrifera_M_contig78130:64..3601622816682.488607-CDS-M-pyrifera_M_contig78130:64..360Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78130 65..360 +
1692278117.0087776-CDS-M-pyrifera_M_contig78130:64..3601692278117.0087776-CDS-M-pyrifera_M_contig78130:64..360Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78130 65..360 +
1622816682.501652-CDS-M-pyrifera_M_contig78130:409..9891622816682.501652-CDS-M-pyrifera_M_contig78130:409..989Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78130 410..989 +
1692278117.0190163-CDS-M-pyrifera_M_contig78130:409..9891692278117.0190163-CDS-M-pyrifera_M_contig78130:409..989Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78130 410..989 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig78130.18365.1prot_M-pyrifera_M_contig78130.18365.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig78130 65..989 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig78130.18365.1

>prot_M-pyrifera_M_contig78130.18365.1 ID=prot_M-pyrifera_M_contig78130.18365.1|Name=mRNA_M-pyrifera_M_contig78130.18365.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=292bp
VECGELNYFDKAYASISMKHNMRLAPASPEEEEPFFNVTTSDDPIIRQLA
TEGKGTVFCTDALLALLVASPRSVYSWDIVIQRVGSKLFLDKRDNGAGTL
AEMLTVYETAPDSPDPENKDAFNRPTELSQESTMINQRFIQQVQMTDMDS
LRFDVENPEEFDTQYPVAYRYRRFKVGEHLLVARCEIDAVRMTSKKNNLF
LSVRALNEYHYEKNVRDKSQSKLGVVDWRLKLESQRGAVVATELKNNSNK
LSRWASQALIAGTDQFILGFVARAHPKDNNNNVTLAPQQYFP
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mRNA from alignment at M-pyrifera_M_contig78130:65..989+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig78130.18365.1 ID=mRNA_M-pyrifera_M_contig78130.18365.1|Name=mRNA_M-pyrifera_M_contig78130.18365.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=925bp|location=Sequence derived from alignment at M-pyrifera_M_contig78130:65..989+ (Macrocystis pyrifera P11B4 male)
GTAGAGTGCGGAGAGCTGAACTACTTCGACAAGGCATACGCAAGCATCTC
TATGAAGCACAACATGCGCCTCGCCCCCGCTTCTCCCGAGGAGGAGGAGC
CCTTCTTCAACGTGACCACCAGCGACGACCCCATCATCCGCCAGCTGGCC
ACCGAGGGCAAGGGCACCGTCTTCTGCACGGATGCACTCCTGGCTCTGCT
CGTCGCCTCTCCCCGCTCGGTGTACTCGTGGGATATTGTCATCCAGCGCG
TCGGCTCCAAGCTCTTCCTCGACAAGCGTGACAACGGCGCTGGTACGTTC
CACGTCCCCCTTTCTGTCTCTTGGCCCCACTGTTACTGACGCGAGGCTTG
CAGAGATGCTCACTGTCTACGAGACTGCCCCTGACTCGCCGGATCCCGAG
AACAAGGACGCCTTCAACAGGCCGACGGAGCTCTCGCAGGAGTCCACCAT
GATCAACCAGCGCTTCATCCAGCAGGTGCAGATGACCGACATGGACTCTC
TCCGCTTCGATGTGGAGAACCCTGAGGAGTTCGACACCCAGTACCCCGTC
GCCTACCGCTACCGCCGCTTCAAGGTGGGCGAGCACCTTCTTGTCGCTCG
TTGCGAGATCGATGCCGTGCGCATGACCAGCAAGAAGAACAACCTCTTCC
TCAGCGTGAGGGCTCTCAACGAGTACCACTACGAGAAGAACGTTCGCGAC
AAGAGCCAGTCCAAGCTGGGCGTGGTCGACTGGCGCCTGAAGCTCGAGTC
TCAGCGTGGTGCCGTGGTTGCGACCGAGCTGAAGAACAACAGCAACAAGC
TCTCTCGCTGGGCCTCCCAGGCACTCATCGCAGGCACGGACCAGTTCATT
CTTGGCTTCGTCGCCCGTGCCCACCCCAAGGACAACAACAACAACGTCAC
CCTGGCCCCCCAGCAATATTTCCCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig78130:65..989+

>mRNA_M-pyrifera_M_contig78130.18365.1 ID=mRNA_M-pyrifera_M_contig78130.18365.1|Name=mRNA_M-pyrifera_M_contig78130.18365.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1752bp|location=Sequence derived from alignment at M-pyrifera_M_contig78130:65..989+ (Macrocystis pyrifera P11B4 male)
GTAGAGTGCGGAGAGCTGAACTACTTCGACAAGGCATACGCAAGCATCTC
TATGAAGCACAACATGCGCCTCGCCCCCGCTTCTCCCGAGGAGGAGGAGC
CCTTCTTCAACGTGACCACCAGCGACGACCCCATCATCCGCCAGCTGGCC
ACCGAGGGCAAGGGCACCGTCTTCTGCACGGATGCACTCCTGGCTCTGCT
CGTCGCCTCTCCCCGCTCGGTGTACTCGTGGGATATTGTCATCCAGCGCG
TCGGCTCCAAGCTCTTCCTCGACAAGCGTGACAACGGCGCTGGTACGTAG
AGTGCGGAGAGCTGAACTACTTCGACAAGGCATACGCAAGCATCTCTATG
AAGCACAACATGCGCCTCGCCCCCGCTTCTCCCGAGGAGGAGGAGCCCTT
CTTCAACGTGACCACCAGCGACGACCCCATCATCCGCCAGCTGGCCACCG
AGGGCAAGGGCACCGTCTTCTGCACGGATGCACTCCTGGCTCTGCTCGTC
GCCTCTCCCCGCTCGGTGTACTCGTGGGATATTGTCATCCAGCGCGTCGG
CTCCAAGCTCTTCCTCGACAAGCGTGACAACGGCGCTGGTACGCTTGCAG
AGATGCTCACTGTCTACGAGACTGCCCCTGACTCGCCGGATCCCGAGAAC
AAGGACGCCTTCAACAGGCCGACGGAGCTCTCGCAGGAGTCCACCATGAT
CAACCAGCGCTTCATCCAGCAGGTGCAGATGACCGACATGGACTCTCTCC
GCTTCGATGTGGAGAACCCTGAGGAGTTCGACACCCAGTACCCCGTCGCC
TACCGCTACCGCCGCTTCAAGGTGGGCGAGCACCTTCTTGTCGCTCGTTG
CGAGATCGATGCCGTGCGCATGACCAGCAAGAAGAACAACCTCTTCCTCA
GCGTGAGGGCTCTCAACGAGTACCACTACGAGAAGAACGTTCGCGACAAG
AGCCAGTCCAAGCTGGGCGTGGTCGACTGGCGCCTGAAGCTCGAGTCTCA
GCGTGGTGCCGTGGTTGCGACCGAGCTGAAGAACAACAGCAACAAGCTCT
CTCGCTGGGCCTCCCAGGCACTCATCGCAGGCACGGACCAGTTCATTCTT
GGCTTCGTCGCCCGTGCCCACCCCAAGGACAACAACAACAACGTCACCCT
GGCCCCCCAGCAATATTTCCCGGCTTGCAGAGATGCTCACTGTCTACGAG
ACTGCCCCTGACTCGCCGGATCCCGAGAACAAGGACGCCTTCAACAGGCC
GACGGAGCTCTCGCAGGAGTCCACCATGATCAACCAGCGCTTCATCCAGC
AGGTGCAGATGACCGACATGGACTCTCTCCGCTTCGATGTGGAGAACCCT
GAGGAGTTCGACACCCAGTACCCCGTCGCCTACCGCTACCGCCGCTTCAA
GGTGGGCGAGCACCTTCTTGTCGCTCGTTGCGAGATCGATGCCGTGCGCA
TGACCAGCAAGAAGAACAACCTCTTCCTCAGCGTGAGGGCTCTCAACGAG
TACCACTACGAGAAGAACGTTCGCGACAAGAGCCAGTCCAAGCTGGGCGT
GGTCGACTGGCGCCTGAAGCTCGAGTCTCAGCGTGGTGCCGTGGTTGCGA
CCGAGCTGAAGAACAACAGCAACAAGCTCTCTCGCTGGGCCTCCCAGGCA
CTCATCGCAGGCACGGACCAGTTCATTCTTGGCTTCGTCGCCCGTGCCCA
CCCCAAGGACAACAACAACAACGTCACCCTGGCCCCCCAGCAATATTTCC
CG
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