mRNA_M-pyrifera_M_contig78125.18364.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig78125.18364.1
Unique NamemRNA_M-pyrifera_M_contig78125.18364.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig78125.18364.1 vs. uniprot
Match: A0A7S4HSZ6_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4HSZ6_9EUKA)

HSP 1 Score: 131 bits (329), Expect = 1.520e-35
Identity = 61/112 (54.46%), Postives = 88/112 (78.57%), Query Frame = 1
Query:   13 HEFDLEELAQFFHLPINEVAVELGVCATVLKKICRKNGIKRWPHRKIKSIDTMVDALESVVPSSPEEQRQILADIQTLREKRSFLEKNPNASYKSVVPKYAINAYNARLQKS 348
            H F L+ELA +F LPINE A +LGVCATVLKK+CR NG+ RWP+RKIKSI+ M+++L+ ++ ++  +   +  D++ L  K+ +L +NPNASYKSVV KYAIN++NA++QK+
Sbjct:    8 HTFTLKELAPYFDLPINEAAEQLGVCATVLKKLCRNNGVDRWPYRKIKSINGMIESLQQLIDANDGDIPAMNMDMEDLLAKKQYLLENPNASYKSVVSKYAINSFNAKIQKA 119          
BLAST of mRNA_M-pyrifera_M_contig78125.18364.1 vs. uniprot
Match: A0A151Z976_9MYCE (RWP-RK domain-containing protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151Z976_9MYCE)

HSP 1 Score: 121 bits (304), Expect = 1.630e-30
Identity = 58/93 (62.37%), Postives = 72/93 (77.42%), Query Frame = 1
Query:    4 TNAHEFDLEELAQFFHLPINEVAVELGVCATVLKKICRKNGIKRWPHRKIKSIDTMVDALESVVPSSPEEQRQILADIQTLREKRSFLEKNPN 282
            T     DL+ L+++FHLPIN VA E+GVCATVLKKICRKNGI RWPHRKIKSID M+  LE+ VP S E+  +I  DI TL++K+++L KNPN
Sbjct:    4 TPTQNIDLQFLSKYFHLPINVVAKEIGVCATVLKKICRKNGIPRWPHRKIKSIDKMISNLENTVPKSQEDSAKIQNDISTLKKKKNYLIKNPN 96          
BLAST of mRNA_M-pyrifera_M_contig78125.18364.1 vs. uniprot
Match: A0A8J4PNB4_9MYCE (RWP-RK domain-containing protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PNB4_9MYCE)

HSP 1 Score: 119 bits (299), Expect = 5.120e-30
Identity = 57/94 (60.64%), Postives = 73/94 (77.66%), Query Frame = 1
Query:    1 HTNAHEFDLEELAQFFHLPINEVAVELGVCATVLKKICRKNGIKRWPHRKIKSIDTMVDALESVVPSSPEEQRQILADIQTLREKRSFLEKNPN 282
            H    + +LE L+++FHLPIN VA E+G+CATVLKKICRKNGI RWPHRKIKSID M+  LE+ VP S EE+ +I  +IQ L +K+++L KNPN
Sbjct:    2 HFTTQDINLEYLSKYFHLPINSVAKEIGICATVLKKICRKNGIPRWPHRKIKSIDKMILNLENTVPKSKEEELKINYEIQALLKKKNYLIKNPN 95          
BLAST of mRNA_M-pyrifera_M_contig78125.18364.1 vs. uniprot
Match: F0ZIW2_DICPU (RWP-RK domain-containing protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZIW2_DICPU)

HSP 1 Score: 119 bits (299), Expect = 7.870e-30
Identity = 56/94 (59.57%), Postives = 74/94 (78.72%), Query Frame = 1
Query:    1 HTNAHEFDLEELAQFFHLPINEVAVELGVCATVLKKICRKNGIKRWPHRKIKSIDTMVDALESVVPSSPEEQRQILADIQTLREKRSFLEKNPN 282
            H +  + +LE L+++FHLPIN VA E+GVCATVLKKICR+NGI RWPHRKIKS+D M+  LE+ VP S EEQ +I  +I  +++K++FL KNPN
Sbjct:    2 HLSTQDINLEYLSKYFHLPINSVAKEIGVCATVLKKICRRNGIPRWPHRKIKSLDKMIANLENTVPKSKEEQIKINNEIAIIKKKKTFLIKNPN 95          
BLAST of mRNA_M-pyrifera_M_contig78125.18364.1 vs. uniprot
Match: UPI000644FCEA (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644FCEA)

HSP 1 Score: 119 bits (299), Expect = 1.260e-29
Identity = 57/112 (50.89%), Postives = 84/112 (75.00%), Query Frame = 1
Query:   16 EFDLEELAQFFHLPINEVAVELGVCATVLKKICRKNGIKRWPHRKIKSIDTMVDALESVVPSSPEEQRQILADIQTLREKRSFLEKNPNA-SYKSVVPKYAINAYNARLQKS 348
            + DL+ L+++FHLPIN+VA E+GVCATVLKKICRKNGI RWPHRKIKSID M+  LE+  P + +E+ +I  +I TL++K+++L K+PN  + KS + +  +   N R+ ++
Sbjct:    7 DIDLQFLSKYFHLPINDVAKEIGVCATVLKKICRKNGIPRWPHRKIKSIDKMISNLENSSPKNADEEHRIKEEISTLKKKKAYLIKHPNILAIKSSIKQKEVEQLNQRISEN 118          
BLAST of mRNA_M-pyrifera_M_contig78125.18364.1 vs. uniprot
Match: UPI000645154E (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000645154E)

HSP 1 Score: 117 bits (293), Expect = 2.050e-29
Identity = 56/91 (61.54%), Postives = 71/91 (78.02%), Query Frame = 1
Query:   10 AHEFDLEELAQFFHLPINEVAVELGVCATVLKKICRKNGIKRWPHRKIKSIDTMVDALESVVPSSPEEQRQILADIQTLREKRSFLEKNPN 282
            A E DL  L+Q+FHLPIN+VA E+GVCATVLKKICRKNGI RWPHRKIKS+D M+  LE   P + EE+ +I  +I +LR K+++L K+PN
Sbjct:    4 AQEIDLPFLSQYFHLPINDVAKEIGVCATVLKKICRKNGIPRWPHRKIKSLDKMIMNLEQTTPKNTEEELRIGEEIMSLRSKKAYLIKHPN 94          
BLAST of mRNA_M-pyrifera_M_contig78125.18364.1 vs. uniprot
Match: Q86J22_DICDI (RWP-RK domain-containing protein n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q86J22_DICDI)

HSP 1 Score: 119 bits (298), Expect = 3.900e-29
Identity = 53/94 (56.38%), Postives = 75/94 (79.79%), Query Frame = 1
Query:    1 HTNAHEFDLEELAQFFHLPINEVAVELGVCATVLKKICRKNGIKRWPHRKIKSIDTMVDALESVVPSSPEEQRQILADIQTLREKRSFLEKNPN 282
            HT+  E DLE L+++FH+PIN VA E+GVCATVLKK+CR+NGI RWPHRKIKS+D M+  LE++ P + EE+ +I  +I  +++K+++L KNPN
Sbjct:    2 HTSTLEIDLEYLSKYFHMPINSVAKEIGVCATVLKKVCRRNGIPRWPHRKIKSLDKMISNLENMTPKTKEEEIKIQNEIAIIKKKKNYLIKNPN 95          
BLAST of mRNA_M-pyrifera_M_contig78125.18364.1 vs. uniprot
Match: D3BPS9_POLPP (RWP-RK domain-containing protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BPS9_POLPP)

HSP 1 Score: 117 bits (293), Expect = 7.570e-29
Identity = 56/112 (50.00%), Postives = 83/112 (74.11%), Query Frame = 1
Query:   16 EFDLEELAQFFHLPINEVAVELGVCATVLKKICRKNGIKRWPHRKIKSIDTMVDALESVVPSSPEEQRQILADIQTLREKRSFLEKNPNA-SYKSVVPKYAINAYNARLQKS 348
            E DL+ L+++FHLPIN+VA E+GVCATVLKKICRKNGI RWPHRKIKSID M+  LE+  P + +E+ +I  +I +L++K+++L K+PN  + KS + +      N ++ ++
Sbjct:    6 EIDLQFLSKYFHLPINDVAKEIGVCATVLKKICRKNGIPRWPHRKIKSIDKMISNLENSTPKNSDEENRIKEEINSLKKKKAYLIKHPNILAIKSSIKQKEAELLNQKINEN 117          
BLAST of mRNA_M-pyrifera_M_contig78125.18364.1 vs. uniprot
Match: L8H164_ACACA (RWPRK domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H164_ACACA)

HSP 1 Score: 116 bits (291), Expect = 1.140e-28
Identity = 54/96 (56.25%), Postives = 73/96 (76.04%), Query Frame = 1
Query:    7 NAHEFDLEELAQFFHLPINEVAVELGVCATVLKKICRKNGIKRWPHRKIKSIDTMVDALESVVPSSPEEQRQILADIQTLREKRSFLEKNPNASYK 294
            ++ +  LE+L ++FHLPIN VA ELGVCATVLKKICRKNGI RWPHRKIKS+D M+ +L+++ P SPE++ +I  +I  L  K+ +L  NPN+  K
Sbjct:    3 HSQDIGLEQLTKYFHLPINAVAKELGVCATVLKKICRKNGIPRWPHRKIKSLDKMIGSLQAISPKSPEDEERIKQEIAALVNKKRYLITNPNSLVK 98          
BLAST of mRNA_M-pyrifera_M_contig78125.18364.1 vs. uniprot
Match: F4PXF1_CAVFA (RWP-RK domain-containing protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PXF1_CAVFA)

HSP 1 Score: 114 bits (286), Expect = 9.270e-28
Identity = 54/89 (60.67%), Postives = 69/89 (77.53%), Query Frame = 1
Query:   16 EFDLEELAQFFHLPINEVAVELGVCATVLKKICRKNGIKRWPHRKIKSIDTMVDALESVVPSSPEEQRQILADIQTLREKRSFLEKNPN 282
            E DL  L+++FHLPIN+VA E+GVCATVLKKICRKNGI RWPHRKIKSID M+  LE+  P + E   +I  +I+ L+ K+++L KNPN
Sbjct:    6 EIDLPFLSKYFHLPINDVAKEIGVCATVLKKICRKNGIPRWPHRKIKSIDKMISNLENTTPKNMEVDVRIKEEIENLKRKKAYLIKNPN 94          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig78125.18364.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4HSZ6_9EUKA1.520e-3554.46Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A151Z976_9MYCE1.630e-3062.37RWP-RK domain-containing protein n=1 Tax=Tieghemos... [more]
A0A8J4PNB4_9MYCE5.120e-3060.64RWP-RK domain-containing protein n=1 Tax=Polysphon... [more]
F0ZIW2_DICPU7.870e-3059.57RWP-RK domain-containing protein n=1 Tax=Dictyoste... [more]
UPI000644FCEA1.260e-2950.89hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
UPI000645154E2.050e-2961.54hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
Q86J22_DICDI3.900e-2956.38RWP-RK domain-containing protein n=1 Tax=Dictyoste... [more]
D3BPS9_POLPP7.570e-2950.00RWP-RK domain-containing protein n=1 Tax=Polysphon... [more]
L8H164_ACACA1.140e-2856.25RWPRK domain containing protein n=1 Tax=Acanthamoe... [more]
F4PXF1_CAVFA9.270e-2860.67RWP-RK domain-containing protein n=1 Tax=Cavenderi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig78125contigM-pyrifera_M_contig78125:87..434 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score121.7
Seed ortholog evalue2.2e-25
Seed eggNOG ortholog5786.XP_003287352.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.RWP-RK domain
EggNOG OGs29UAD@1,2RXI7@2759,3X9CB@554915
COG Functional cat.S
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
Exons1
Model size348
Cds size348
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816682.4530928-CDS-M-pyrifera_M_contig78125:86..4341622816682.4530928-CDS-M-pyrifera_M_contig78125:86..434Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78125 87..434 +
1692278116.9983869-CDS-M-pyrifera_M_contig78125:86..4341692278116.9983869-CDS-M-pyrifera_M_contig78125:86..434Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78125 87..434 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig78125.18364.1prot_M-pyrifera_M_contig78125.18364.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig78125 87..434 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig78125.18364.1

>prot_M-pyrifera_M_contig78125.18364.1 ID=prot_M-pyrifera_M_contig78125.18364.1|Name=mRNA_M-pyrifera_M_contig78125.18364.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=116bp
HTNAHEFDLEELAQFFHLPINEVAVELGVCATVLKKICRKNGIKRWPHRK
IKSIDTMVDALESVVPSSPEEQRQILADIQTLREKRSFLEKNPNASYKSV
VPKYAINAYNARLQKS
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mRNA from alignment at M-pyrifera_M_contig78125:87..434+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig78125.18364.1 ID=mRNA_M-pyrifera_M_contig78125.18364.1|Name=mRNA_M-pyrifera_M_contig78125.18364.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=348bp|location=Sequence derived from alignment at M-pyrifera_M_contig78125:87..434+ (Macrocystis pyrifera P11B4 male)
CACACGAACGCGCACGAGTTCGACCTGGAGGAGCTGGCCCAGTTTTTCCA CCTGCCCATCAACGAGGTGGCAGTCGAGCTCGGCGTCTGCGCGACGGTGC TCAAGAAGATTTGCCGCAAGAACGGCATCAAGCGCTGGCCCCACCGCAAG ATTAAGAGCATTGACACCATGGTCGACGCCCTGGAGTCGGTGGTTCCCAG TTCCCCCGAGGAGCAGAGGCAGATTCTTGCCGACATCCAGACCCTCCGAG AGAAGCGCTCCTTCCTCGAGAAGAACCCCAACGCCTCCTACAAGAGCGTG GTGCCAAAGTACGCCATCAACGCCTACAACGCCCGCCTGCAGAAGAGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig78125:87..434+

>mRNA_M-pyrifera_M_contig78125.18364.1 ID=mRNA_M-pyrifera_M_contig78125.18364.1|Name=mRNA_M-pyrifera_M_contig78125.18364.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=696bp|location=Sequence derived from alignment at M-pyrifera_M_contig78125:87..434+ (Macrocystis pyrifera P11B4 male)
CACACGAACGCGCACGAGTTCGACCTGGAGGAGCTGGCCCAGTTTTTCCA
CCTGCCCATCAACGAGGTGGCAGTCGAGCTCGGCGTCTGCGCGACGGTGC
TCAAGAAGATTTGCCGCAAGAACGGCATCAAGCGCTGGCCCCACCGCAAG
ATTAAGAGCATTGACACCATGGTCGACGCCCTGGAGTCGGTGGTTCCCAG
TTCCCCCGAGGAGCAGAGGCAGATTCTTGCCGACATCCAGACCCTCCGAG
AGAAGCGCTCCTTCCTCGAGAAGAACCCCAACGCCTCCTACAAGAGCGTG
GTGCCAAAGTACGCCATCAACGCCTACAACGCCCGCCTGCAGAAGAGTCA
CACGAACGCGCACGAGTTCGACCTGGAGGAGCTGGCCCAGTTTTTCCACC
TGCCCATCAACGAGGTGGCAGTCGAGCTCGGCGTCTGCGCGACGGTGCTC
AAGAAGATTTGCCGCAAGAACGGCATCAAGCGCTGGCCCCACCGCAAGAT
TAAGAGCATTGACACCATGGTCGACGCCCTGGAGTCGGTGGTTCCCAGTT
CCCCCGAGGAGCAGAGGCAGATTCTTGCCGACATCCAGACCCTCCGAGAG
AAGCGCTCCTTCCTCGAGAAGAACCCCAACGCCTCCTACAAGAGCGTGGT
GCCAAAGTACGCCATCAACGCCTACAACGCCCGCCTGCAGAAGAGT
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