mRNA_M-pyrifera_M_contig7812.18362.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig7812.18362.1 vs. uniprot
Match: D7FKS2_ECTSI (50S ribosomal protein l19-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKS2_ECTSI) HSP 1 Score: 202 bits (514), Expect = 7.370e-64 Identity = 97/119 (81.51%), Postives = 111/119 (93.28%), Query Frame = 1 Query: 1 EQCSGDRGVWPEMKIGDAIEVTMYTNKKASRTTQVRGVLVRKVNKGIDSTILLRDVINGNSVESHIPLFSPLMESIQVMETAFIYQGKLKGKRVRPARIYYIRELDQKYYRITGGGGSE 357 EQ +G+R P+MKIGDAIEVTMY NKKA+RT+QVRGVL+RKVNKGIDS+ILLRDVINGN VE HIPLFSPL++S++VMETAFIYQGKL+GKRVRPARIYYIR+LDQK YRITGGGGS+ Sbjct: 102 EQRNGERCELPDMKIGDAIEVTMYANKKATRTSQVRGVLLRKVNKGIDSSILLRDVINGNPVEHHIPLFSPLIQSVEVMETAFIYQGKLRGKRVRPARIYYIRDLDQKLYRITGGGGSD 220
BLAST of mRNA_M-pyrifera_M_contig7812.18362.1 vs. uniprot
Match: A0A835ZJ13_9STRA (Translation protein SH3-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJ13_9STRA) HSP 1 Score: 108 bits (269), Expect = 4.910e-27 Identity = 47/105 (44.76%), Postives = 74/105 (70.48%), Query Frame = 1 Query: 28 WPEMKIGDAIEVTMYTNKKASRTTQVRGVLVRKVNKGIDSTILLRDVINGNSVESHIPLFSPLMESIQVMETAFIYQGKLKGKRVRPARIYYIRELDQKYYRITG 342 +P+ K GDAIE M A + VRG+++ + +GI S+ ++RDV+ ++E +PL+SPL++SI V++ IY+GK +GKRVRP++IYY+R LD KY ++TG Sbjct: 81 FPDFKTGDAIECQMLPYMTAPKAEPVRGIVLGRFKRGIASSFIVRDVLYDEAIERRVPLYSPLLKSITVLKRRAIYEGKQEGKRVRPSKIYYLRNLDNKYSQVTG 185
BLAST of mRNA_M-pyrifera_M_contig7812.18362.1 vs. uniprot
Match: A0A7S2P9J5_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2P9J5_9STRA) HSP 1 Score: 87.8 bits (216), Expect = 1.960e-19 Identity = 42/111 (37.84%), Postives = 73/111 (65.77%), Query Frame = 1 Query: 25 VWP-EMKIGDAIEVTMYT-----NKKASRTTQVRGVLVRKVNKGIDSTILLRDVINGNSVESHIPLFSPLMESIQVMETAFIYQGKLKGKRVRPARIYYIRELDQKYYRIT 339 VW K+GDA+E+ + N + R ++RGV++ + NKG+D+ I L+DV+ G VE + L SP+++S++V+E F+ +GK KG+RV+ A++YY+R+ + R+T Sbjct: 54 VWEVPFKVGDAVELEVLDSGGVQNPQNKRYDKIRGVVLGRENKGLDTGIYLKDVLFGEHVERKVKLHSPMVKSLKVLEEGFVNRGKKKGRRVKRAKLYYLRDRKPEETRVT 164
BLAST of mRNA_M-pyrifera_M_contig7812.18362.1 vs. uniprot
Match: B8BTE2_THAPS (50S ribosomal protein l19-like protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BTE2_THAPS) HSP 1 Score: 87.8 bits (216), Expect = 2.320e-19 Identity = 40/105 (38.10%), Postives = 72/105 (68.57%), Query Frame = 1 Query: 40 KIGDAIEVTMYT-----NKKASRTTQVRGVLVRKVNKGIDSTILLRDVINGNSVESHIPLFSPLMESIQVMETAFIYQGKLKGKRVRPARIYYIRELDQKYYRIT 339 K+GDA+E+ + N + + ++RGV++ + N+G+D++I L+DV+ G VE I L SP++++++V+E F+ +GK KGKRVR A++YY+R+ + R+T Sbjct: 46 KVGDAVELQVLDSGGVDNPQNKKLDKIRGVVLGRENRGMDTSIYLKDVLFGEHVERKIKLHSPMVKTLKVLEEGFVNRGKRKGKRVRRAKLYYLRDRKPEETRVT 150
BLAST of mRNA_M-pyrifera_M_contig7812.18362.1 vs. uniprot
Match: A0A7S1GN95_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GN95_CYCTE) HSP 1 Score: 86.3 bits (212), Expect = 1.150e-18 Identity = 39/102 (38.24%), Postives = 71/102 (69.61%), Query Frame = 1 Query: 40 KIGDAIEVTMYTNKKA--SRTTQVRGVLVRKVNKGIDSTILLRDVINGNSVESHIPLFSPLMESIQVMETAFIYQGKLKGKRVRPARIYYIRELDQKYYRIT 339 ++GD++E+ M + +VRG+++ KVN+G+ S++++RDV+ G VE IPL+SP+++S++++E F+++GK K KR A++YY+RE YR+T Sbjct: 85 RVGDSVELEMVGEGGTLEGKLEKVRGLVIGKVNRGLASSLIVRDVVFGEPVEWKIPLYSPMVKSLKILERNFVFKGKRKVKR---AKLYYLRERSPNEYRVT 183
BLAST of mRNA_M-pyrifera_M_contig7812.18362.1 vs. uniprot
Match: A0A8J9SNI4_PHATR (Hypothetical protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9SNI4_PHATR) HSP 1 Score: 82.4 bits (202), Expect = 3.530e-18 Identity = 39/93 (41.94%), Postives = 65/93 (69.89%), Query Frame = 1 Query: 40 KIGDAIEVTMYTNK--KASRTTQVRGVLVRKVNKGIDSTILLRDVINGNSVESHIPLFSPLMESIQVMETAFIYQGKLKGKRVRPARIYYIRE 312 ++GDAIE+ M ++ K+ T +RGV++ + +D+T+LLRDV+ G +E +PL SPL+ S++V+E FIY+GK K KR A++Y++R+ Sbjct: 1 RVGDAIEIEMVSDGGVKSDDTDLIRGVVIGITRRALDTTVLLRDVVFGEPIERRVPLHSPLLRSLKVLEENFIYKGKRKVKR---AKLYFLRD 90
BLAST of mRNA_M-pyrifera_M_contig7812.18362.1 vs. uniprot
Match: A0A7S3MA30_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MA30_9STRA) HSP 1 Score: 84.3 bits (207), Expect = 3.790e-18 Identity = 40/105 (38.10%), Postives = 70/105 (66.67%), Query Frame = 1 Query: 28 WPEMKIGDAIEVTMYTNKKASRTTQVRGVLVRKVNKGI--DSTILLRDVINGNSVESHIPLFSPLMESIQVMETAFIYQGKLKGKRVRPARIYYIRELDQKYYRI 336 WP+ GDAIE+ A+ ++GV++ + NK + D+++LL +V +G VE IP++SPL++ I+V++ AFI++GK KRVR +++YY+ +L K+Y + Sbjct: 60 WPDFSAGDAIEIHKLPYMSATVPDVIKGVVIGRFNKHMRMDASLLLLNVESGTKVERRIPIYSPLIKDIKVIQKAFIHKGK---KRVRRSKLYYLSDLHPKFYTV 161
BLAST of mRNA_M-pyrifera_M_contig7812.18362.1 vs. uniprot
Match: K0SBD7_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SBD7_THAOC) HSP 1 Score: 85.5 bits (210), Expect = 1.380e-17 Identity = 42/111 (37.84%), Postives = 72/111 (64.86%), Query Frame = 1 Query: 25 VWP-EMKIGDAIEVTMYT-----NKKASRTTQVRGVLVRKVNKGIDSTILLRDVINGNSVESHIPLFSPLMESIQVMETAFIYQGKLKGKRVRPARIYYIRELDQKYYRIT 339 VW K+GDA+E+ + N ++RGV++ + NKG+D++I LRDV+ G VE + L SPL++S++V+E F+ +G+ KG+RV+ A++YY+R+ + R+T Sbjct: 169 VWEVPFKVGDAVELEILDSGGVDNPNNRPLEKIRGVVLGRHNKGLDTSINLRDVLFGEPVERKVKLHSPLVKSLKVLEEGFVNRGRRKGRRVKRAKLYYLRDRKPEETRVT 279
BLAST of mRNA_M-pyrifera_M_contig7812.18362.1 vs. uniprot
Match: A0A7R9UET9_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UET9_9STRA) HSP 1 Score: 83.6 bits (205), Expect = 1.790e-17 Identity = 33/100 (33.00%), Postives = 63/100 (63.00%), Query Frame = 1 Query: 31 PEMKIGDAIEVTMYTNKKASRTTQVRGVLVRKVNKGIDSTILLRDVINGNSVESHIPLFSPLMESIQVMETAFIYQGKLKGKRVRPARIYYIRELDQKYY 330 P+ ++GD + V+ K + GV++ KG+D +IL+R V+ G+ E +PL+SPL+++++++E I++GK G+RVR +++YY+R + Y Sbjct: 101 PDYRVGDKVRVSFLQAKSEEKPDDYVGVIIANPKKGVDESILVRGVVKGDCFEVRVPLWSPLLKAVEILEPRCIHKGKKAGRRVRRSKLYYLRNREPSTY 200
BLAST of mRNA_M-pyrifera_M_contig7812.18362.1 vs. uniprot
Match: A0A1Z5JBA1_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JBA1_FISSO) HSP 1 Score: 81.3 bits (199), Expect = 1.020e-16 Identity = 41/107 (38.32%), Postives = 71/107 (66.36%), Query Frame = 1 Query: 25 VW-PEMKIGDAIEVTM-YTNKKASRTTQVRGVLVRKVNKGIDSTILLRDVINGNSVESHIPLFSPLMESIQVMETAFIYQGKLKGKRVRPARIYYIRELDQKYYRIT 339 VW ++GDAIE+ + N + + ++RGV++ KG+D ++LLRDV+ G VE I L SPL++S++++E F+Y+GK K KR A++Y++R+ + + R+T Sbjct: 81 VWGTHFRVGDAIELVIGRENAEKNEIEKIRGVVLGISRKGLDHSVLLRDVVFGQPVERRILLHSPLLQSVKLLEENFVYKGKRKVKR---AKLYFLRDRNPELTRVT 184 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7812.18362.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig7812.18362.1 >prot_M-pyrifera_M_contig7812.18362.1 ID=prot_M-pyrifera_M_contig7812.18362.1|Name=mRNA_M-pyrifera_M_contig7812.18362.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=109bp MKIGDAIEVTMYTNKKASRTTQVRGVLVRKVNKGIDSTILLRDVINGNSVback to top mRNA from alignment at M-pyrifera_M_contig7812:846..4217- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig7812.18362.1 ID=mRNA_M-pyrifera_M_contig7812.18362.1|Name=mRNA_M-pyrifera_M_contig7812.18362.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3372bp|location=Sequence derived from alignment at M-pyrifera_M_contig7812:846..4217- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig7812:846..4217- >mRNA_M-pyrifera_M_contig7812.18362.1 ID=mRNA_M-pyrifera_M_contig7812.18362.1|Name=mRNA_M-pyrifera_M_contig7812.18362.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=654bp|location=Sequence derived from alignment at M-pyrifera_M_contig7812:846..4217- (Macrocystis pyrifera P11B4 male)back to top |