mRNA_M-pyrifera_M_contig78097.18361.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig78097.18361.1
Unique NamemRNA_M-pyrifera_M_contig78097.18361.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig78097.18361.1 vs. uniprot
Match: A0A0F9KML8_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=A0A0F9KML8_9ZZZZ)

HSP 1 Score: 135 bits (340), Expect = 5.220e-34
Identity = 75/151 (49.67%), Postives = 100/151 (66.23%), Query Frame = 1 
Query:    1 DKDVVLTADFVRLEPLGSLIFASRENTGVINFAGDTDGYLVEAEAGETIAAIVTPNDPAVTLTIELVGLSGQFVAPAPGGSVVLPATALPADGLYEVRVSGDLGPAAYSLDIYRNAELEGT--DTSDGNELPIDGSFVPLGSGRYAVLGSS 447
            +K    T  F RL PLG L FASR+N+G+INFA + + +   AE G+ I+A+VTP DP V L++ L G    F AP PG  VVL +  + + G + V+VSGD G + + LDIY N  LE    D++DGNEL ID SF+PLGSGRY+V+G+S
Sbjct:  447 EKPTTETNPFQRLRPLGGLSFASRDNSGLINFAKEEEAFHFSAEGGQVISAVVTPGDPNVILSMSLDG-GPAFDAPGPGEPVVLQSQEIGSSGTHTVQVSGD-GTSTFVLDIYGNTLLEAEVGDSTDGNELAIDDSFIPLGSGRYSVVGTS 595
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BLAST of mRNA_M-pyrifera_M_contig78097.18361.1 vs. uniprot
Match: A0A353BCQ1_9PLAN (Uncharacterized protein (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A353BCQ1_9PLAN)

HSP 1 Score: 99.4 bits (246), Expect = 2.390e-21
Identity = 63/151 (41.72%), Postives = 86/151 (56.95%), Query Frame = 1 
Query:    1 DKDVVLTADFVRLEPLGSLIFASRENTGVINFAGDTDGYLVEAEAGETIAAIVTPNDPAVTLTIELVGLSGQFVAPAPGGSVVLPATALPADGLYEVRVSGDLGPAAYSLDIYRNAELEGT--DTSDGNELPIDGSFVPLGSGRYAVLGSS 447
            D +   + DF RL P GS + +S  NT  ++ A DTDG    A AG+T++AI    DP VTL++ELVGL G     A G SV      +PADG+YE R++   G    S++IY    +E T  D++  N LP++ SF  +G GRYA L  S
Sbjct: 1784 DLETKPSEDFQRLAPFGSGLASSLNNTVRLHDANDTDGITFFANAGDTVSAIGRVQDPGVTLSLELVGL-GTASGSANGQSVAFAPVTIPADGVYEFRLTAT-GETNASVEIYPGTTVELTVGDSTVDNPLPLNNSFSAVGPGRYAALALS 1932
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig78097.18361.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0F9KML8_9ZZZZ5.220e-3449.67Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
A0A353BCQ1_9PLAN2.390e-2141.72Uncharacterized protein (Fragment) n=1 Tax=Plancto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig78097contigM-pyrifera_M_contig78097:528..974 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size447
Cds size447
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816682.2994025-CDS-M-pyrifera_M_contig78097:527..9741622816682.2994025-CDS-M-pyrifera_M_contig78097:527..974Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78097 528..974 -
1692278116.9229546-CDS-M-pyrifera_M_contig78097:527..9741692278116.9229546-CDS-M-pyrifera_M_contig78097:527..974Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78097 528..974 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig78097.18361.1prot_M-pyrifera_M_contig78097.18361.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig78097 528..974 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig78097.18361.1

>prot_M-pyrifera_M_contig78097.18361.1 ID=prot_M-pyrifera_M_contig78097.18361.1|Name=mRNA_M-pyrifera_M_contig78097.18361.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=149bp
DKDVVLTADFVRLEPLGSLIFASRENTGVINFAGDTDGYLVEAEAGETIA
AIVTPNDPAVTLTIELVGLSGQFVAPAPGGSVVLPATALPADGLYEVRVS
GDLGPAAYSLDIYRNAELEGTDTSDGNELPIDGSFVPLGSGRYAVLGSS
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mRNA from alignment at M-pyrifera_M_contig78097:528..974-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig78097.18361.1 ID=mRNA_M-pyrifera_M_contig78097.18361.1|Name=mRNA_M-pyrifera_M_contig78097.18361.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=447bp|location=Sequence derived from alignment at M-pyrifera_M_contig78097:528..974- (Macrocystis pyrifera P11B4 male)
GACAAAGACGTCGTGTTGACTGCCGATTTTGTTCGCCTGGAACCACTTGG
CAGTCTCATCTTCGCTAGTCGCGAAAACACAGGCGTCATTAACTTCGCTG
GCGACACCGACGGATACCTCGTCGAAGCAGAAGCCGGCGAAACCATCGCA
GCGATCGTCACGCCGAATGATCCTGCAGTGACGCTAACCATCGAACTGGT
TGGCTTAAGCGGTCAGTTCGTAGCACCCGCACCCGGCGGGTCGGTAGTGC
TTCCCGCCACGGCTTTACCAGCCGATGGATTGTACGAAGTTCGCGTCAGC
GGAGACTTGGGCCCCGCTGCATACAGTTTGGATATCTACCGCAACGCCGA
ACTCGAAGGCACTGACACAAGCGATGGCAACGAGTTACCCATCGACGGGT
CCTTCGTGCCGTTGGGCTCAGGGCGCTATGCCGTTCTTGGGAGCAGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig78097:528..974-

>mRNA_M-pyrifera_M_contig78097.18361.1 ID=mRNA_M-pyrifera_M_contig78097.18361.1|Name=mRNA_M-pyrifera_M_contig78097.18361.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=894bp|location=Sequence derived from alignment at M-pyrifera_M_contig78097:528..974- (Macrocystis pyrifera P11B4 male)
GACAAAGACGTCGTGTTGACTGCCGATTTTGTTCGCCTGGAACCACTTGG
CAGTCTCATCTTCGCTAGTCGCGAAAACACAGGCGTCATTAACTTCGCTG
GCGACACCGACGGATACCTCGTCGAAGCAGAAGCCGGCGAAACCATCGCA
GCGATCGTCACGCCGAATGATCCTGCAGTGACGCTAACCATCGAACTGGT
TGGCTTAAGCGGTCAGTTCGTAGCACCCGCACCCGGCGGGTCGGTAGTGC
TTCCCGCCACGGCTTTACCAGCCGATGGATTGTACGAAGTTCGCGTCAGC
GGAGACTTGGGCCCCGCTGCATACAGTTTGGATATCTACCGCAACGCCGA
ACTCGAAGGCACTGACACAAGCGATGGCAACGAGTTACCCATCGACGGGT
CCTTCGTGCCGTTGGGCTCAGGGCGCTATGCCGTTCTTGGGAGCAGTGAC
AAAGACGTCGTGTTGACTGCCGATTTTGTTCGCCTGGAACCACTTGGCAG
TCTCATCTTCGCTAGTCGCGAAAACACAGGCGTCATTAACTTCGCTGGCG
ACACCGACGGATACCTCGTCGAAGCAGAAGCCGGCGAAACCATCGCAGCG
ATCGTCACGCCGAATGATCCTGCAGTGACGCTAACCATCGAACTGGTTGG
CTTAAGCGGTCAGTTCGTAGCACCCGCACCCGGCGGGTCGGTAGTGCTTC
CCGCCACGGCTTTACCAGCCGATGGATTGTACGAAGTTCGCGTCAGCGGA
GACTTGGGCCCCGCTGCATACAGTTTGGATATCTACCGCAACGCCGAACT
CGAAGGCACTGACACAAGCGATGGCAACGAGTTACCCATCGACGGGTCCT
TCGTGCCGTTGGGCTCAGGGCGCTATGCCGTTCTTGGGAGCAGT
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