mRNA_M-pyrifera_M_contig78076.18356.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig78076.18356.1
Unique NamemRNA_M-pyrifera_M_contig78076.18356.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig78076.18356.1 vs. uniprot
Match: A0A0G4IG35_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4IG35_9ALVE)

HSP 1 Score: 169 bits (427), Expect = 4.860e-47
Identity = 85/158 (53.80%), Postives = 106/158 (67.09%), Query Frame = 1 
Query:    1 EEVWADELGPEVHGGVHPVRVRNFSGEEIHNQAHATLEGTHVDSTERVAVIMIERHNVADGHGVTALYKEETPMGLRRDLPDDEEVIAPLRLLEVTLKDRFEGISFVDTGFKHDGSPVEAEDTSQKCWRSVCLVMCRRALTAESPVDNRVIDGYTPRS 474
            E+VW  ELGP+VH  VHPV VRN+    +H QA++T EGTHVDST RVAVI++ R NV  G   T+LY    P+G +R + +DE  +APLRL EVTL +  + I+F D  FKHD S  E ED S+  WRSV LVMCR   T  SP+D+  +DG TPRS
Sbjct:  338 EKVWDHELGPQVHIAVHPVLVRNYHEGALHTQAYSTYEGTHVDSTMRVAVILLGRQNVKAGTATTSLYHSSCPIGKQRFVSEDEAHLAPLRLAEVTLTEPLQAITFDDCEFKHDASNPEPEDPSEPMWRSVLLVMCRVPCTERSPLDDHAVDGGTPRS 495
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig78076.18356.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0G4IG35_9ALVE4.860e-4753.80Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig78076contigM-pyrifera_M_contig78076:9..557 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size498
Cds size498
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816682.0883002-CDS-M-pyrifera_M_contig78076:8..1891622816682.0883002-CDS-M-pyrifera_M_contig78076:8..189Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78076 9..189 +
1692278116.8316805-CDS-M-pyrifera_M_contig78076:8..1891692278116.8316805-CDS-M-pyrifera_M_contig78076:8..189Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78076 9..189 +
1622816682.1006153-CDS-M-pyrifera_M_contig78076:240..5571622816682.1006153-CDS-M-pyrifera_M_contig78076:240..557Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78076 241..557 +
1692278116.8421257-CDS-M-pyrifera_M_contig78076:240..5571692278116.8421257-CDS-M-pyrifera_M_contig78076:240..557Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78076 241..557 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig78076.18356.1prot_M-pyrifera_M_contig78076.18356.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig78076 9..557 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig78076.18356.1

>prot_M-pyrifera_M_contig78076.18356.1 ID=prot_M-pyrifera_M_contig78076.18356.1|Name=mRNA_M-pyrifera_M_contig78076.18356.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=166bp
EEVWADELGPEVHGGVHPVRVRNFSGEEIHNQAHATLEGTHVDSTERVAV
IMIERHNVADGHGVTALYKEETPMGLRRDLPDDEEVIAPLRLLEVTLKDR
FEGISFVDTGFKHDGSPVEAEDTSQKCWRSVCLVMCRRALTAESPVDNRV
IDGYTPRSPCRRKEK*
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mRNA from alignment at M-pyrifera_M_contig78076:9..557+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig78076.18356.1 ID=mRNA_M-pyrifera_M_contig78076.18356.1|Name=mRNA_M-pyrifera_M_contig78076.18356.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=549bp|location=Sequence derived from alignment at M-pyrifera_M_contig78076:9..557+ (Macrocystis pyrifera P11B4 male)
GAGGAGGTTTGGGCTGACGAGCTCGGCCCTGAGGTCCACGGAGGGGTCCA
CCCTGTGCGGGTGCGAAATTTCTCGGGCGAGGAGATCCACAACCAAGCCC
ACGCAACCCTCGAGGGCACTCACGTCGACTCTACGGAGCGAGTGGCCGTA
ATCATGATCGAGCGACACAACGTTGCCGACGGTGAGTGCCGCTTTGCGCT
GCTGAGGCGTTTCCGTTCCTGACGCCTGGCAGGACATGGGGTGACGGCGC
TCTACAAGGAAGAGACGCCCATGGGCCTGCGGAGGGACCTTCCTGACGAC
GAGGAAGTCATTGCCCCTCTCCGTCTCTTGGAGGTGACGCTGAAGGACCG
CTTCGAGGGCATCTCCTTCGTGGACACGGGATTCAAGCACGACGGCAGCC
CTGTAGAGGCCGAGGACACCAGCCAGAAGTGCTGGAGGTCCGTGTGCCTC
GTCATGTGCCGGAGGGCTCTCACTGCCGAGTCTCCTGTCGACAACCGCGT
GATTGACGGCTACACTCCCCGCTCCCCCTGCCGCCGCAAGGAGAAGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig78076:9..557+

>mRNA_M-pyrifera_M_contig78076.18356.1 ID=mRNA_M-pyrifera_M_contig78076.18356.1|Name=mRNA_M-pyrifera_M_contig78076.18356.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=996bp|location=Sequence derived from alignment at M-pyrifera_M_contig78076:9..557+ (Macrocystis pyrifera P11B4 male)
GAGGAGGTTTGGGCTGACGAGCTCGGCCCTGAGGTCCACGGAGGGGTCCA
CCCTGTGCGGGTGCGAAATTTCTCGGGCGAGGAGATCCACAACCAAGCCC
ACGCAACCCTCGAGGGCACTCACGTCGACTCTACGGAGCGAGTGGCCGTA
ATCATGATCGAGCGACACAACGTTGCCGACGGAGGAGGTTTGGGCTGACG
AGCTCGGCCCTGAGGTCCACGGAGGGGTCCACCCTGTGCGGGTGCGAAAT
TTCTCGGGCGAGGAGATCCACAACCAAGCCCACGCAACCCTCGAGGGCAC
TCACGTCGACTCTACGGAGCGAGTGGCCGTAATCATGATCGAGCGACACA
ACGTTGCCGACGGACATGGGGTGACGGCGCTCTACAAGGAAGAGACGCCC
ATGGGCCTGCGGAGGGACCTTCCTGACGACGAGGAAGTCATTGCCCCTCT
CCGTCTCTTGGAGGTGACGCTGAAGGACCGCTTCGAGGGCATCTCCTTCG
TGGACACGGGATTCAAGCACGACGGCAGCCCTGTAGAGGCCGAGGACACC
AGCCAGAAGTGCTGGAGGTCCGTGTGCCTCGTCATGTGCCGGAGGGCTCT
CACTGCCGAGTCTCCTGTCGACAACCGCGTGATTGACGGCTACACTCCCC
GCTCCCCCTGCCGCCGCAAGGAGAAGTGAGACATGGGGTGACGGCGCTCT
ACAAGGAAGAGACGCCCATGGGCCTGCGGAGGGACCTTCCTGACGACGAG
GAAGTCATTGCCCCTCTCCGTCTCTTGGAGGTGACGCTGAAGGACCGCTT
CGAGGGCATCTCCTTCGTGGACACGGGATTCAAGCACGACGGCAGCCCTG
TAGAGGCCGAGGACACCAGCCAGAAGTGCTGGAGGTCCGTGTGCCTCGTC
ATGTGCCGGAGGGCTCTCACTGCCGAGTCTCCTGTCGACAACCGCGTGAT
TGACGGCTACACTCCCCGCTCCCCCTGCCGCCGCAAGGAGAAGTGA
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