mRNA_M-pyrifera_M_contig78072.18353.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig78072.18353.1
Unique NamemRNA_M-pyrifera_M_contig78072.18353.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig78072.18353.1 vs. uniprot
Match: A0A359ELS0_9GAMM (Transcription-repair-coupling factor n=3 Tax=Halieaceae bacterium TaxID=2026743 RepID=A0A359ELS0_9GAMM)

HSP 1 Score: 630 bits (1624), Expect = 1.910e-217
Identity = 322/331 (97.28%), Postives = 327/331 (98.79%), Query Frame = 1 
Query:    1 FCFELPALEYEQFSASFPFEETADQAAAIEAVIGDMTATRVMDRLVCGDVGFGKTEVAMRAAFIAARNGKQVAVLVPTTLLAQQHYNSFADRFADWPVTVDVVSRFKSGKDLGGVLQRVADGAIDILVGTHKLLSSDFRFHDLGLLIIDEEHRFGVKQKEAIKALRAEVDILTLTATPIPRTLNMALGGMRDLSIIATPPARRLSIKTFVREHNIALIREAVLRETLRGGQVYYLHNEVKSIEEAGRKLRELLPDLSIGIAHGQMRETALEQVMSAFYHQRHHILLCTTIIETGIDVPTANTIIIERADKFGLAQLHQLRGRVGRSHHQAY 993
            FCFELPALEYEQF+ASFPFEETADQAAAIEAVIGDMTATRVMDRLVCGDVGFGKTEVAMRAAFIAARNGKQVAVLVPTTLLAQQHYNSFADRFADWPVTV+VVSRFKSGKDLGGVLQRVADGAIDILVGTHKLLSSDFRFHDLGLLIIDEEHRFGVKQKEAIKALRAEVDILTLTATPIPRTLNMALGGMRDLSIIATPPARRLSIKTFVREHNIALIREAVLRETLRGGQVYYLHNEVKSIEEAGRKLRELLPDLSIGIAHGQMRET LEQVMSAFYHQRHHILLCTTIIETGIDVPTANTIIIERADKFGLAQLHQLRGRVGR   +++
Sbjct:  584 FCFELPALEYEQFAASFPFEETADQAAAIEAVIGDMTATRVMDRLVCGDVGFGKTEVAMRAAFIAARNGKQVAVLVPTTLLAQQHYNSFADRFADWPVTVEVVSRFKSGKDLGGVLQRVADGAIDILVGTHKLLSSDFRFHDLGLLIIDEEHRFGVKQKEAIKALRAEVDILTLTATPIPRTLNMALGGMRDLSIIATPPARRLSIKTFVREHNIALIREAVLRETLRGGQVYYLHNEVKSIEEAGRKLRELLPDLSIGIAHGQMRETELEQVMSAFYHQRHHILLCTTIIETGIDVPTANTIIIERADKFGLAQLHQLRGRVGRGSQKSF 914
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BLAST of mRNA_M-pyrifera_M_contig78072.18353.1 vs. uniprot
Match: A0A2E7C143_9GAMM (Transcription-repair-coupling factor n=10 Tax=Halieaceae TaxID=1706372 RepID=A0A2E7C143_9GAMM)

HSP 1 Score: 626 bits (1615), Expect = 1.780e-214
Identity = 317/331 (95.77%), Postives = 326/331 (98.49%), Query Frame = 1 
Query:    1 FCFELPALEYEQFSASFPFEETADQAAAIEAVIGDMTATRVMDRLVCGDVGFGKTEVAMRAAFIAARNGKQVAVLVPTTLLAQQHYNSFADRFADWPVTVDVVSRFKSGKDLGGVLQRVADGAIDILVGTHKLLSSDFRFHDLGLLIIDEEHRFGVKQKEAIKALRAEVDILTLTATPIPRTLNMALGGMRDLSIIATPPARRLSIKTFVREHNIALIREAVLRETLRGGQVYYLHNEVKSIEEAGRKLRELLPDLSIGIAHGQMRETALEQVMSAFYHQRHHILLCTTIIETGIDVPTANTIIIERADKFGLAQLHQLRGRVGRSHHQAY 993
            FCFELPALEYEQF+ASFPFEETADQAAAI+AVI DMTA RVMDRLVCGDVGFGKTEVAMRAAFIAARNGKQVAVLVPTTLLAQQH+NSFADRFADWPVTV+VVSRFKSGKDLGGVLQRV++G IDIL+GTHKLLSSDFRFHDLGLLIIDEEHRFGVKQKEAIKALRAEVDILTLTATPIPRTLNMALGGMRDLS+IATPPARRLSIKTFVREHNIALIREAVLRETLRGGQVYYLHNEVKSIEEAGRKLRELLPDLSIG+AHGQMRE  LEQVMSAFYHQRHHILLCTTIIETGIDVPTANTIIIERADKFGLAQLHQLRGRVGRSHHQAY
Sbjct:  584 FCFELPALEYEQFAASFPFEETADQAAAIDAVIADMTAERVMDRLVCGDVGFGKTEVAMRAAFIAARNGKQVAVLVPTTLLAQQHFNSFADRFADWPVTVEVVSRFKSGKDLGGVLQRVSNGDIDILIGTHKLLSSDFRFHDLGLLIIDEEHRFGVKQKEAIKALRAEVDILTLTATPIPRTLNMALGGMRDLSVIATPPARRLSIKTFVREHNIALIREAVLRETLRGGQVYYLHNEVKSIEEAGRKLRELLPDLSIGVAHGQMREAELEQVMSAFYHQRHHILLCTTIIETGIDVPTANTIIIERADKFGLAQLHQLRGRVGRSHHQAY 914
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BLAST of mRNA_M-pyrifera_M_contig78072.18353.1 vs. uniprot
Match: A0A2D5FES0_9GAMM (Transcription-repair-coupling factor n=2 Tax=Haliea sp. TaxID=1932666 RepID=A0A2D5FES0_9GAMM)

HSP 1 Score: 595 bits (1535), Expect = 1.780e-202
Identity = 301/331 (90.94%), Postives = 317/331 (95.77%), Query Frame = 1 
Query:    1 FCFELPALEYEQFSASFPFEETADQAAAIEAVIGDMTATRVMDRLVCGDVGFGKTEVAMRAAFIAARNGKQVAVLVPTTLLAQQHYNSFADRFADWPVTVDVVSRFKSGKDLGGVLQRVADGAIDILVGTHKLLSSDFRFHDLGLLIIDEEHRFGVKQKEAIKALRAEVDILTLTATPIPRTLNMALGGMRDLSIIATPPARRLSIKTFVREHNIALIREAVLRETLRGGQVYYLHNEVKSIEEAGRKLRELLPDLSIGIAHGQMRETALEQVMSAFYHQRHHILLCTTIIETGIDVPTANTIIIERADKFGLAQLHQLRGRVGRSHHQAY 993
            FCFELPALEYEQF+ASFPFEETADQAA+I+AVI DMT+ RVMDRLVCGDVGFGKTEVAMRAAFIAARN KQVAVLVPTTLLAQQHYNSFADRFADWPVTV++VSRF+SGK++  VL R+  G IDILVGTHKLLS +FRF DLGLLIIDEEHRFGVKQKEAIKALRAEVDILTLTATPIPRTLNMALGGMRDLSIIATPPARRLSIKTFVREHNIALIREAVLRETLRGGQVYYLHNEVK+I+EA RKLRELLPDLSIG+AHGQMRET LEQVMSAFYHQRHHILLCTTIIETGID+P ANTIIIERAD+FGLAQLHQLRGRVGRSHHQAY
Sbjct:  584 FCFELPALEYEQFAASFPFEETADQAASIQAVIDDMTSPRVMDRLVCGDVGFGKTEVAMRAAFIAARNAKQVAVLVPTTLLAQQHYNSFADRFADWPVTVEMVSRFRSGKEMDAVLARLERGDIDILVGTHKLLSKEFRFADLGLLIIDEEHRFGVKQKEAIKALRAEVDILTLTATPIPRTLNMALGGMRDLSIIATPPARRLSIKTFVREHNIALIREAVLRETLRGGQVYYLHNEVKTIQEAARKLRELLPDLSIGVAHGQMRETELEQVMSAFYHQRHHILLCTTIIETGIDIPNANTIIIERADRFGLAQLHQLRGRVGRSHHQAY 914
[Close]
BLAST of mRNA_M-pyrifera_M_contig78072.18353.1 vs. uniprot
Match: A0A2N5Y1E1_9GAMM (Transcription-repair-coupling factor n=1 Tax=Kineobactrum sediminis TaxID=1905677 RepID=A0A2N5Y1E1_9GAMM)

HSP 1 Score: 580 bits (1495), Expect = 1.740e-196
Identity = 292/331 (88.22%), Postives = 309/331 (93.35%), Query Frame = 1 
Query:    1 FCFELPALEYEQFSASFPFEETADQAAAIEAVIGDMTATRVMDRLVCGDVGFGKTEVAMRAAFIAARNGKQVAVLVPTTLLAQQHYNSFADRFADWPVTVDVVSRFKSGKDLGGVLQRVADGAIDILVGTHKLLSSDFRFHDLGLLIIDEEHRFGVKQKEAIKALRAEVDILTLTATPIPRTLNMALGGMRDLSIIATPPARRLSIKTFVREHNIALIREAVLRETLRGGQVYYLHNEVKSIEEAGRKLRELLPDLSIGIAHGQMRETALEQVMSAFYHQRHHILLCTTIIETGIDVPTANTIIIERADKFGLAQLHQLRGRVGRSHHQAY 993
            F FELP  EYE+FSASFPFEETADQAAAI AVI DMT+ RVMDRLVCGDVGFGKTEVAMRAAFIAA+NGKQVA+LVPTTLLAQQH++SF+DRFADWPVTVDV+SRFKSGK    V QR A G ++IL+GTHKLL  DF+F DLGLLIIDEEHRFGVKQKE IKALRAEVDILTLTATPIPRTLNMALGGMRDLSIIATPPARRLSIKTFVREHNIAL+REAVLRETLRGGQVYYLHNEV++IEE  RKLRELLPDLSIG+AHGQMRET LEQVMSAFYHQRHHILLCTTIIETGID+P ANTIIIERADKFGLAQLHQLRGRVGRSHHQAY
Sbjct:  584 FRFELPIPEYEEFSASFPFEETADQAAAISAVIDDMTSPRVMDRLVCGDVGFGKTEVAMRAAFIAAQNGKQVAILVPTTLLAQQHFSSFSDRFADWPVTVDVLSRFKSGKQTDAVAQRAASGEVNILIGTHKLLQRDFKFKDLGLLIIDEEHRFGVKQKETIKALRAEVDILTLTATPIPRTLNMALGGMRDLSIIATPPARRLSIKTFVREHNIALVREAVLRETLRGGQVYYLHNEVRTIEETARKLRELLPDLSIGVAHGQMRETQLEQVMSAFYHQRHHILLCTTIIETGIDIPNANTIIIERADKFGLAQLHQLRGRVGRSHHQAY 914
[Close]
BLAST of mRNA_M-pyrifera_M_contig78072.18353.1 vs. uniprot
Match: A0A7V0ZMX1_9GAMM (Transcription-repair-coupling factor n=1 Tax=Halieaceae bacterium TaxID=2026743 RepID=A0A7V0ZMX1_9GAMM)

HSP 1 Score: 560 bits (1444), Expect = 5.000e-192
Identity = 284/331 (85.80%), Postives = 298/331 (90.03%), Query Frame = 1 
Query:    1 FCFELPALEYEQFSASFPFEETADQAAAIEAVIGDMTATRVMDRLVCGDVGFGKTEVAMRAAFIAARNGKQVAVLVPTTLLAQQHYNSFADRFADWPVTVDVVSRFKSGKDLGGVLQRVADGAIDILVGTHKLLSSDFRFHDLGLLIIDEEHRFGVKQKEAIKALRAEVDILTLTATPIPRTLNMALGGMRDLSIIATPPARRLSIKTFVREHNIALIREAVLRETLRGGQVYYLHNEVKSIEEAGRKLRELLPDLSIGIAHGQMRETALEQVMSAFYHQRHHILLCTTIIETGIDVPTANTIIIERADKFGLAQLHQLRGRVGRSHHQAY 993
            F F+     YEQF A+FPFEET DQA  I AVI DM + RVMDRLVCGDVGFGKTEVAMRAAF+A  N KQVAVLVPTTLLAQQHYNSF DRFADWPVTV+VVSRFKS K L  + + VA G IDILVGTHKLL SDFRF DLGLLIIDEEHRFGVKQKE IKALR+EVDILTLTATPIPRTLNMALGGMRDLSIIATPPARRLSIKTFVREHNIAL++EAVLRETLRGGQVYYLHNEVK+IEE  RKLRELLPDLSIG+AHGQMRET LEQVMSAFYH+RHHILLCTTIIETGID+P ANTIIIERADKFGLAQLHQLRGRVGRSHHQAY
Sbjct:  319 FAFKREVHSYEQFCAAFPFEETPDQAVTINAVIEDMHSGRVMDRLVCGDVGFGKTEVAMRAAFVATHNNKQVAVLVPTTLLAQQHYNSFCDRFADWPVTVEVVSRFKSAKQLADITRAVASGDIDILVGTHKLLQSDFRFDDLGLLIIDEEHRFGVKQKEVIKALRSEVDILTLTATPIPRTLNMALGGMRDLSIIATPPARRLSIKTFVREHNIALVKEAVLRETLRGGQVYYLHNEVKTIEETARKLRELLPDLSIGVAHGQMRETQLEQVMSAFYHRRHHILLCTTIIETGIDIPNANTIIIERADKFGLAQLHQLRGRVGRSHHQAY 649
[Close]
BLAST of mRNA_M-pyrifera_M_contig78072.18353.1 vs. uniprot
Match: A0A661H2B0_9GAMM (Transcription-repair-coupling factor n=4 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A661H2B0_9GAMM)

HSP 1 Score: 564 bits (1454), Expect = 2.380e-190
Identity = 286/331 (86.40%), Postives = 302/331 (91.24%), Query Frame = 1 
Query:    1 FCFELPALEYEQFSASFPFEETADQAAAIEAVIGDMTATRVMDRLVCGDVGFGKTEVAMRAAFIAARNGKQVAVLVPTTLLAQQHYNSFADRFADWPVTVDVVSRFKSGKDLGGVLQRVADGAIDILVGTHKLLSSDFRFHDLGLLIIDEEHRFGVKQKEAIKALRAEVDILTLTATPIPRTLNMALGGMRDLSIIATPPARRLSIKTFVREHNIALIREAVLRETLRGGQVYYLHNEVKSIEEAGRKLRELLPDLSIGIAHGQMRETALEQVMSAFYHQRHHILLCTTIIETGIDVPTANTIIIERADKFGLAQLHQLRGRVGRSHHQAY 993
            F FE     YEQFSA+FPFEET DQA  I AVI DM + RVMDRLVCGDVGFGKTEVAMRAAF+A RN KQVAVLVPTTLLAQQHYNSF DRFADWPVTV+VVSRFKS K L  V++ VA G IDILVGTHKLL S+F+F DLGLLIIDEEHRFGVKQKE IKALR+EVDILTLTATPIPRTLNMALGGMRDLSIIATPPARRLSIKTFVREHNIAL++EAVLRETLRGGQVYYLHNEVK+IEE+ RKLRELLPDLSIG+AHGQMRET LEQVMSAFYH+RHHILLCTTIIETGID+P ANTIIIERADKFGLAQLHQLRGRVGRSHHQAY
Sbjct:  584 FAFERELHSYEQFSAAFPFEETPDQAVTINAVIEDMHSGRVMDRLVCGDVGFGKTEVAMRAAFVATRNNKQVAVLVPTTLLAQQHYNSFCDRFADWPVTVEVVSRFKSAKQLADVMRAVASGDIDILVGTHKLLQSNFKFDDLGLLIIDEEHRFGVKQKEVIKALRSEVDILTLTATPIPRTLNMALGGMRDLSIIATPPARRLSIKTFVREHNIALVKEAVLRETLRGGQVYYLHNEVKTIEESARKLRELLPDLSIGVAHGQMRETQLEQVMSAFYHRRHHILLCTTIIETGIDIPNANTIIIERADKFGLAQLHQLRGRVGRSHHQAY 914
[Close]
BLAST of mRNA_M-pyrifera_M_contig78072.18353.1 vs. uniprot
Match: A0A7W2TUB2_9GAMM (Transcription-repair-coupling factor n=1 Tax=Sediminihaliea albiluteola TaxID=2758564 RepID=A0A7W2TUB2_9GAMM)

HSP 1 Score: 563 bits (1452), Expect = 4.730e-190
Identity = 281/331 (84.89%), Postives = 309/331 (93.35%), Query Frame = 1 
Query:    1 FCFELPALEYEQFSASFPFEETADQAAAIEAVIGDMTATRVMDRLVCGDVGFGKTEVAMRAAFIAARNGKQVAVLVPTTLLAQQHYNSFADRFADWPVTVDVVSRFKSGKDLGGVLQRVADGAIDILVGTHKLLSSDFRFHDLGLLIIDEEHRFGVKQKEAIKALRAEVDILTLTATPIPRTLNMALGGMRDLSIIATPPARRLSIKTFVREHNIALIREAVLRETLRGGQVYYLHNEVKSIEEAGRKLRELLPDLSIGIAHGQMRETALEQVMSAFYHQRHHILLCTTIIETGIDVPTANTIIIERADKFGLAQLHQLRGRVGRSHHQAY 993
            F FE+PALEY+QF+A+FPFEET DQ + I AV+ DM++ RVMDRLVCGDVGFGKTEVAMRAAFIAARNGKQVAVLVPTTLLAQQH++SF+DRFADWP+TV+VVSRFK+GK L  V +RVADG IDILVGTHKLL  DF++ DLGLLIIDEEHRFGVKQKEAIKALRAEVDILTLTATPIPRTLNMA+GGMRDLSIIATPPARRLSIKTFVREHNIALI+EAVLRETLRGGQVYYLHNEVK+IE+   KLRELLP+LSI +AHGQM+E+ LEQVMSAFYH+ HHILLCTTIIETGID+P ANTIIIERAD+FGLAQLHQLRGRVGRSHHQAY
Sbjct:  584 FQFEIPALEYQQFAATFPFEETFDQESTIAAVLDDMSSPRVMDRLVCGDVGFGKTEVAMRAAFIAARNGKQVAVLVPTTLLAQQHFSSFSDRFADWPITVEVVSRFKTGKQLTAVSKRVADGEIDILVGTHKLLQQDFKYKDLGLLIIDEEHRFGVKQKEAIKALRAEVDILTLTATPIPRTLNMAIGGMRDLSIIATPPARRLSIKTFVREHNIALIKEAVLRETLRGGQVYYLHNEVKTIEQTASKLRELLPELSIAVAHGQMQESQLEQVMSAFYHKHHHILLCTTIIETGIDIPNANTIIIERADRFGLAQLHQLRGRVGRSHHQAY 914
[Close]
BLAST of mRNA_M-pyrifera_M_contig78072.18353.1 vs. uniprot
Match: UPI0019D329B6 (transcription-repair coupling factor n=1 Tax=Parahaliea mediterranea TaxID=651086 RepID=UPI0019D329B6)

HSP 1 Score: 562 bits (1448), Expect = 1.870e-189
Identity = 280/329 (85.11%), Postives = 307/329 (93.31%), Query Frame = 1 
Query:    7 FELPALEYEQFSASFPFEETADQAAAIEAVIGDMTATRVMDRLVCGDVGFGKTEVAMRAAFIAARNGKQVAVLVPTTLLAQQHYNSFADRFADWPVTVDVVSRFKSGKDLGGVLQRVADGAIDILVGTHKLLSSDFRFHDLGLLIIDEEHRFGVKQKEAIKALRAEVDILTLTATPIPRTLNMALGGMRDLSIIATPPARRLSIKTFVREHNIALIREAVLRETLRGGQVYYLHNEVKSIEEAGRKLRELLPDLSIGIAHGQMRETALEQVMSAFYHQRHHILLCTTIIETGIDVPTANTIIIERADKFGLAQLHQLRGRVGRSHHQAY 993
            F++P  +YEQF+ASFPFEETADQAAAI+AV+ DM + +VMDRLVCGDVGFGKTEVAMRAAF+AA N KQVAVLVPTTLLAQQH++SF+DRFADWP  V+VVSRFKSGKDL  V +RVA+G IDILVGTHKLL +DF F DLGLLIIDEEHRFGVKQKEAIKALRAEVDILTLTATPIPRTLNMALGG+RDLSIIATPPARRLSIKTFVREHNIALI+EAVLRETLRGGQVYYLHNEVK+IE+  RKLRELLP+LS+ +AHGQMRE  LEQVMSAFYHQ+HHILLCTTI+ETGID+P ANTIIIERAD+FGLAQLHQLRGRVGRSHHQAY
Sbjct:  586 FDIPRADYEQFAASFPFEETADQAAAIDAVLADMASGQVMDRLVCGDVGFGKTEVAMRAAFVAASNRKQVAVLVPTTLLAQQHFSSFSDRFADWPFNVEVVSRFKSGKDLAAVSKRVAEGEIDILVGTHKLLQTDFGFKDLGLLIIDEEHRFGVKQKEAIKALRAEVDILTLTATPIPRTLNMALGGLRDLSIIATPPARRLSIKTFVREHNIALIKEAVLRETLRGGQVYYLHNEVKTIEQTARKLRELLPELSVAVAHGQMREHQLEQVMSAFYHQQHHILLCTTIVETGIDIPNANTIIIERADRFGLAQLHQLRGRVGRSHHQAY 914
[Close]
BLAST of mRNA_M-pyrifera_M_contig78072.18353.1 vs. uniprot
Match: A0A2E0Z0K4_9GAMM (Transcription-repair-coupling factor n=1 Tax=Halioglobus sp. TaxID=2024834 RepID=A0A2E0Z0K4_9GAMM)

HSP 1 Score: 557 bits (1435), Expect = 1.600e-187
Identity = 276/331 (83.38%), Postives = 302/331 (91.24%), Query Frame = 1 
Query:    1 FCFELPALEYEQFSASFPFEETADQAAAIEAVIGDMTATRVMDRLVCGDVGFGKTEVAMRAAFIAARNGKQVAVLVPTTLLAQQHYNSFADRFADWPVTVDVVSRFKSGKDLGGVLQRVADGAIDILVGTHKLLSSDFRFHDLGLLIIDEEHRFGVKQKEAIKALRAEVDILTLTATPIPRTLNMALGGMRDLSIIATPPARRLSIKTFVREHNIALIREAVLRETLRGGQVYYLHNEVKSIEEAGRKLRELLPDLSIGIAHGQMRETALEQVMSAFYHQRHHILLCTTIIETGIDVPTANTIIIERADKFGLAQLHQLRGRVGRSHHQAY 993
            F F     +Y +F A+FPFEET DQ  AI+AV+ DM + RVMDRLVCGDVGFGKTEVA+RAAF+AAR GKQVAVLVPTTLLAQQHYN+F+DRFADWPV+V++VSRF+SG +   +LQR A G +DIL+GTHKLL SDFRFHDLGLLIIDEEHRFGVKQKE IKALRAEVDILTLTATPIPRTLNMALGGMRDLSIIATPPARRLSIKTFVREHN+ALI+EAVLRETLRGGQVYYLHNEVK+IEE  RKLRELLPD+SI +AHGQMRET LEQVMSAFYHQRHH+LLCTTIIETGID+P ANTIIIERAD+FGLAQLHQLRGRVGRSHHQAY
Sbjct:  581 FAFRRDDADYLKFCAAFPFEETPDQEEAIDAVLDDMCSERVMDRLVCGDVGFGKTEVALRAAFVAARQGKQVAVLVPTTLLAQQHYNTFSDRFADWPVSVEMVSRFRSGSESQRILQRAASGKLDILIGTHKLLQSDFRFHDLGLLIIDEEHRFGVKQKEVIKALRAEVDILTLTATPIPRTLNMALGGMRDLSIIATPPARRLSIKTFVREHNVALIKEAVLRETLRGGQVYYLHNEVKTIEETARKLRELLPDMSIAVAHGQMRETELEQVMSAFYHQRHHVLLCTTIIETGIDIPNANTIIIERADRFGLAQLHQLRGRVGRSHHQAY 911
[Close]
BLAST of mRNA_M-pyrifera_M_contig78072.18353.1 vs. uniprot
Match: A0A2N5X4U0_9GAMM (Transcription-repair-coupling factor n=1 Tax=Pseudohalioglobus lutimaris TaxID=1737061 RepID=A0A2N5X4U0_9GAMM)

HSP 1 Score: 555 bits (1431), Expect = 6.510e-187
Identity = 278/331 (83.99%), Postives = 303/331 (91.54%), Query Frame = 1 
Query:    1 FCFELPALEYEQFSASFPFEETADQAAAIEAVIGDMTATRVMDRLVCGDVGFGKTEVAMRAAFIAARNGKQVAVLVPTTLLAQQHYNSFADRFADWPVTVDVVSRFKSGKDLGGVLQRVADGAIDILVGTHKLLSSDFRFHDLGLLIIDEEHRFGVKQKEAIKALRAEVDILTLTATPIPRTLNMALGGMRDLSIIATPPARRLSIKTFVREHNIALIREAVLRETLRGGQVYYLHNEVKSIEEAGRKLRELLPDLSIGIAHGQMRETALEQVMSAFYHQRHHILLCTTIIETGIDVPTANTIIIERADKFGLAQLHQLRGRVGRSHHQAY 993
            F FE+  + Y+QFSA+FPFEET DQ   I+AVI DM   RVMDRLVCGDVGFGKTEVAMRAAF+A +N KQVAVLVPTTLLAQQH++SF+DRFADWPV V+VVSRFKS   +  V +R+A+G IDILVGTHKLL SDF F DLGLLIIDEEHRFGVKQKEAIKALR+EVDILTLTATPIPRTLNMALGGMRDLSIIATPPARRLSIKTFVREHN+ALI+EAVLRETLRGGQVYYLHNEVKSIEE+ RKLREL+P+L++G+AHGQMRET LEQVMSAFYHQRHHILLCTTIIETGID+P ANTIIIERADKFGLAQLHQLRGRVGRSHHQAY
Sbjct:  584 FAFEVDPITYDQFSAAFPFEETPDQEVTIKAVIDDMRNPRVMDRLVCGDVGFGKTEVAMRAAFVATQNRKQVAVLVPTTLLAQQHFSSFSDRFADWPVNVEVVSRFKSAAQMREVSKRIAEGKIDILVGTHKLLQSDFHFDDLGLLIIDEEHRFGVKQKEAIKALRSEVDILTLTATPIPRTLNMALGGMRDLSIIATPPARRLSIKTFVREHNVALIKEAVLRETLRGGQVYYLHNEVKSIEESARKLRELVPELTVGVAHGQMRETELEQVMSAFYHQRHHILLCTTIIETGIDIPNANTIIIERADKFGLAQLHQLRGRVGRSHHQAY 914
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig78072.18353.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A359ELS0_9GAMM1.910e-21797.28Transcription-repair-coupling factor n=3 Tax=Halie... [more]
A0A2E7C143_9GAMM1.780e-21495.77Transcription-repair-coupling factor n=10 Tax=Hali... [more]
A0A2D5FES0_9GAMM1.780e-20290.94Transcription-repair-coupling factor n=2 Tax=Halie... [more]
A0A2N5Y1E1_9GAMM1.740e-19688.22Transcription-repair-coupling factor n=1 Tax=Kineo... [more]
A0A7V0ZMX1_9GAMM5.000e-19285.80Transcription-repair-coupling factor n=1 Tax=Halie... [more]
A0A661H2B0_9GAMM2.380e-19086.40Transcription-repair-coupling factor n=4 Tax=Gamma... [more]
A0A7W2TUB2_9GAMM4.730e-19084.89Transcription-repair-coupling factor n=1 Tax=Sedim... [more]
UPI0019D329B61.870e-18985.11transcription-repair coupling factor n=1 Tax=Parah... [more]
A0A2E0Z0K4_9GAMM1.600e-18783.38Transcription-repair-coupling factor n=1 Tax=Halio... [more]
A0A2N5X4U0_9GAMM6.510e-18783.99Transcription-repair-coupling factor n=1 Tax=Pseud... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig78072contigM-pyrifera_M_contig78072:1..993 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score644.4
Seed ortholog evalue2.8e-182
Seed eggNOG ortholog1121937.AUHJ01000005_gene2298
Preferred namemfd
KEGG koko:K03723
KEGG Pathwayko03420,map03420
Hectar predicted targeting categoryother localisation
GOsGO:0000715,GO:0000716,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006355,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008094,GO:0008150,GO:0008152,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0015616,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019219,GO:0019222,GO:0019899,GO:0031323,GO:0031326,GO:0033554,GO:0034641,GO:0042623,GO:0043170,GO:0043175,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0051276,GO:0051716,GO:0060255,GO:0065007,GO:0070063,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0140097,GO:1901360,GO:1901363,GO:1903506,GO:2000112,GO:2001141
EggNOG free text desc.Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
EggNOG OGs1MUXG@1224,1RNCU@1236,464IX@72275,COG1197@1,COG1197@2
COG Functional cat.L
Best tax levelAlteromonadaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400
Exons1
Model size993
Cds size993
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816681.96972-CDS-M-pyrifera_M_contig78072:0..9931622816681.96972-CDS-M-pyrifera_M_contig78072:0..993Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78072 1..993 -
1692278116.7836077-CDS-M-pyrifera_M_contig78072:0..9931692278116.7836077-CDS-M-pyrifera_M_contig78072:0..993Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78072 1..993 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig78072.18353.1prot_M-pyrifera_M_contig78072.18353.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig78072 1..993 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig78072.18353.1

>prot_M-pyrifera_M_contig78072.18353.1 ID=prot_M-pyrifera_M_contig78072.18353.1|Name=mRNA_M-pyrifera_M_contig78072.18353.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=331bp
FCFELPALEYEQFSASFPFEETADQAAAIEAVIGDMTATRVMDRLVCGDV
GFGKTEVAMRAAFIAARNGKQVAVLVPTTLLAQQHYNSFADRFADWPVTV
DVVSRFKSGKDLGGVLQRVADGAIDILVGTHKLLSSDFRFHDLGLLIIDE
EHRFGVKQKEAIKALRAEVDILTLTATPIPRTLNMALGGMRDLSIIATPP
ARRLSIKTFVREHNIALIREAVLRETLRGGQVYYLHNEVKSIEEAGRKLR
ELLPDLSIGIAHGQMRETALEQVMSAFYHQRHHILLCTTIIETGIDVPTA
NTIIIERADKFGLAQLHQLRGRVGRSHHQAY
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mRNA from alignment at M-pyrifera_M_contig78072:1..993-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig78072.18353.1 ID=mRNA_M-pyrifera_M_contig78072.18353.1|Name=mRNA_M-pyrifera_M_contig78072.18353.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=993bp|location=Sequence derived from alignment at M-pyrifera_M_contig78072:1..993- (Macrocystis pyrifera P11B4 male)
TTCTGTTTCGAGTTGCCAGCGCTGGAGTACGAACAGTTCTCGGCGAGCTT
CCCGTTTGAGGAGACCGCGGATCAGGCGGCAGCGATTGAGGCGGTTATCG
GCGATATGACCGCGACGCGGGTCATGGACCGCCTGGTGTGCGGCGACGTG
GGCTTTGGGAAAACCGAGGTGGCCATGCGTGCGGCGTTTATTGCCGCGCG
CAACGGCAAGCAGGTCGCGGTACTGGTGCCCACCACCCTGCTCGCCCAAC
AGCACTACAACTCATTTGCCGATCGCTTCGCCGACTGGCCTGTGACCGTG
GACGTGGTGTCGCGCTTCAAAAGCGGCAAGGATCTCGGCGGCGTTCTACA
GCGGGTTGCCGACGGCGCCATCGACATCCTCGTGGGTACCCACAAGCTAC
TCTCCAGCGACTTCCGCTTCCATGATCTGGGCCTGCTGATCATCGACGAG
GAGCATCGCTTTGGCGTCAAACAGAAAGAGGCGATCAAGGCCTTGCGTGC
CGAGGTGGACATTCTCACCCTGACCGCCACACCGATTCCGCGCACGCTGA
ACATGGCCCTGGGCGGCATGCGGGACCTGTCTATCATCGCCACACCGCCC
GCCCGCCGTCTGTCTATCAAGACCTTCGTGCGCGAGCACAATATCGCCCT
GATTCGGGAGGCAGTACTGCGCGAAACGCTGCGCGGCGGGCAGGTGTACT
ACCTGCACAATGAGGTCAAGAGTATCGAGGAAGCGGGGCGCAAGTTACGC
GAGCTGCTGCCGGATCTCTCGATCGGCATCGCCCACGGGCAGATGCGCGA
GACAGCGCTGGAACAGGTGATGTCGGCCTTCTACCACCAGCGCCACCATA
TTCTGCTGTGCACCACGATTATCGAAACGGGGATTGACGTCCCCACTGCC
AACACCATCATCATTGAGCGCGCCGACAAGTTCGGACTCGCCCAGCTGCA
CCAGCTGCGTGGCCGTGTCGGGCGCTCACACCACCAGGCCTAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig78072:1..993-

>mRNA_M-pyrifera_M_contig78072.18353.1 ID=mRNA_M-pyrifera_M_contig78072.18353.1|Name=mRNA_M-pyrifera_M_contig78072.18353.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1986bp|location=Sequence derived from alignment at M-pyrifera_M_contig78072:1..993- (Macrocystis pyrifera P11B4 male)
TTCTGTTTCGAGTTGCCAGCGCTGGAGTACGAACAGTTCTCGGCGAGCTT
CCCGTTTGAGGAGACCGCGGATCAGGCGGCAGCGATTGAGGCGGTTATCG
GCGATATGACCGCGACGCGGGTCATGGACCGCCTGGTGTGCGGCGACGTG
GGCTTTGGGAAAACCGAGGTGGCCATGCGTGCGGCGTTTATTGCCGCGCG
CAACGGCAAGCAGGTCGCGGTACTGGTGCCCACCACCCTGCTCGCCCAAC
AGCACTACAACTCATTTGCCGATCGCTTCGCCGACTGGCCTGTGACCGTG
GACGTGGTGTCGCGCTTCAAAAGCGGCAAGGATCTCGGCGGCGTTCTACA
GCGGGTTGCCGACGGCGCCATCGACATCCTCGTGGGTACCCACAAGCTAC
TCTCCAGCGACTTCCGCTTCCATGATCTGGGCCTGCTGATCATCGACGAG
GAGCATCGCTTTGGCGTCAAACAGAAAGAGGCGATCAAGGCCTTGCGTGC
CGAGGTGGACATTCTCACCCTGACCGCCACACCGATTCCGCGCACGCTGA
ACATGGCCCTGGGCGGCATGCGGGACCTGTCTATCATCGCCACACCGCCC
GCCCGCCGTCTGTCTATCAAGACCTTCGTGCGCGAGCACAATATCGCCCT
GATTCGGGAGGCAGTACTGCGCGAAACGCTGCGCGGCGGGCAGGTGTACT
ACCTGCACAATGAGGTCAAGAGTATCGAGGAAGCGGGGCGCAAGTTACGC
GAGCTGCTGCCGGATCTCTCGATCGGCATCGCCCACGGGCAGATGCGCGA
GACAGCGCTGGAACAGGTGATGTCGGCCTTCTACCACCAGCGCCACCATA
TTCTGCTGTGCACCACGATTATCGAAACGGGGATTGACGTCCCCACTGCC
AACACCATCATCATTGAGCGCGCCGACAAGTTCGGACTCGCCCAGCTGCA
CCAGCTGCGTGGCCGTGTCGGGCGCTCACACCACCAGGCCTACTTCTGTT
TCGAGTTGCCAGCGCTGGAGTACGAACAGTTCTCGGCGAGCTTCCCGTTT
GAGGAGACCGCGGATCAGGCGGCAGCGATTGAGGCGGTTATCGGCGATAT
GACCGCGACGCGGGTCATGGACCGCCTGGTGTGCGGCGACGTGGGCTTTG
GGAAAACCGAGGTGGCCATGCGTGCGGCGTTTATTGCCGCGCGCAACGGC
AAGCAGGTCGCGGTACTGGTGCCCACCACCCTGCTCGCCCAACAGCACTA
CAACTCATTTGCCGATCGCTTCGCCGACTGGCCTGTGACCGTGGACGTGG
TGTCGCGCTTCAAAAGCGGCAAGGATCTCGGCGGCGTTCTACAGCGGGTT
GCCGACGGCGCCATCGACATCCTCGTGGGTACCCACAAGCTACTCTCCAG
CGACTTCCGCTTCCATGATCTGGGCCTGCTGATCATCGACGAGGAGCATC
GCTTTGGCGTCAAACAGAAAGAGGCGATCAAGGCCTTGCGTGCCGAGGTG
GACATTCTCACCCTGACCGCCACACCGATTCCGCGCACGCTGAACATGGC
CCTGGGCGGCATGCGGGACCTGTCTATCATCGCCACACCGCCCGCCCGCC
GTCTGTCTATCAAGACCTTCGTGCGCGAGCACAATATCGCCCTGATTCGG
GAGGCAGTACTGCGCGAAACGCTGCGCGGCGGGCAGGTGTACTACCTGCA
CAATGAGGTCAAGAGTATCGAGGAAGCGGGGCGCAAGTTACGCGAGCTGC
TGCCGGATCTCTCGATCGGCATCGCCCACGGGCAGATGCGCGAGACAGCG
CTGGAACAGGTGATGTCGGCCTTCTACCACCAGCGCCACCATATTCTGCT
GTGCACCACGATTATCGAAACGGGGATTGACGTCCCCACTGCCAACACCA
TCATCATTGAGCGCGCCGACAAGTTCGGACTCGCCCAGCTGCACCAGCTG
CGTGGCCGTGTCGGGCGCTCACACCACCAGGCCTAC
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