mRNA_M-pyrifera_M_contig78035.18351.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig78035.18351.1
Unique NamemRNA_M-pyrifera_M_contig78035.18351.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig78035.18351.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig78035contigM-pyrifera_M_contig78035:229..651 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size381
Cds size381
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816681.8792655-CDS-M-pyrifera_M_contig78035:228..3841622816681.8792655-CDS-M-pyrifera_M_contig78035:228..384Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78035 229..384 -
1692278116.7454424-CDS-M-pyrifera_M_contig78035:228..3841692278116.7454424-CDS-M-pyrifera_M_contig78035:228..384Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78035 229..384 -
1622816681.8919346-CDS-M-pyrifera_M_contig78035:426..6511622816681.8919346-CDS-M-pyrifera_M_contig78035:426..651Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78035 427..651 -
1692278116.7552755-CDS-M-pyrifera_M_contig78035:426..6511692278116.7552755-CDS-M-pyrifera_M_contig78035:426..651Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78035 427..651 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig78035.18351.1prot_M-pyrifera_M_contig78035.18351.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig78035 229..651 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig78035.18351.1

>prot_M-pyrifera_M_contig78035.18351.1 ID=prot_M-pyrifera_M_contig78035.18351.1|Name=mRNA_M-pyrifera_M_contig78035.18351.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=127bp
KFAHICRLGVPVHAVLAALHKAGFRHMVVLHRNYLKVALSMAHVKQKHVA
YHTGSQQVESCSDLSLRVGGVAGVSDEEPLLGSFEVLDKAYHDAVESPHF
RDHLLLSYERDIYEDPLVAYAKLRTYL
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mRNA from alignment at M-pyrifera_M_contig78035:229..651-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig78035.18351.1 ID=mRNA_M-pyrifera_M_contig78035.18351.1|Name=mRNA_M-pyrifera_M_contig78035.18351.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=423bp|location=Sequence derived from alignment at M-pyrifera_M_contig78035:229..651- (Macrocystis pyrifera P11B4 male)
AAGTTTGCCCACATCTGTAGGCTCGGGGTGCCAGTGCACGCCGTCCTGGC
AGCTTTGCACAAGGCAGGCTTCAGGCACATGGTGGTACTCCACCGCAACT
ACCTCAAGGTTGCTCTCTCCATGGCGCACGTCAAGCAGAAGCACGTGGCC
TACCACACAGGCAGCCAACAGGTGGAGTCTTGCAGCGATCTTTCGCTGCG
GGTGGGGGGCGTGGCGGGTGTGTCGGTGGGCAGCGGTGCGATCCAGAACA
GCTGCGGGAGAGAGAAGGATGAAGAGCCCCTGCTGGGCTCCTTTGAGGTA
TTGGACAAGGCCTACCATGACGCAGTCGAGTCGCCTCACTTCCGCGACCA
CTTGCTGCTCTCCTACGAGAGGGACATTTACGAGGATCCGCTCGTCGCTT
ACGCAAAGCTGCGCACCTATCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig78035:229..651-

>mRNA_M-pyrifera_M_contig78035.18351.1 ID=mRNA_M-pyrifera_M_contig78035.18351.1|Name=mRNA_M-pyrifera_M_contig78035.18351.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=762bp|location=Sequence derived from alignment at M-pyrifera_M_contig78035:229..651- (Macrocystis pyrifera P11B4 male)
AAGTTTGCCCACATCTGTAGGCTCGGGGTGCCAGTGCACGCCGTCCTGGC
AGCTTTGCACAAGGCAGGCTTCAGGCACATGGTGGTACTCCACCGCAACT
ACCTCAAGGTTGCTCTCTCCATGGCGCACGTCAAGCAGAAGCACGTGGCC
TACCACACAGGCAGCCAACAGGTGGAGTCTTGCAGCGATCTTTCGCTGCG
GGTGGGGGGCGTGGCGGGTGTGTCGAAGTTTGCCCACATCTGTAGGCTCG
GGGTGCCAGTGCACGCCGTCCTGGCAGCTTTGCACAAGGCAGGCTTCAGG
CACATGGTGGTACTCCACCGCAACTACCTCAAGGTTGCTCTCTCCATGGC
GCACGTCAAGCAGAAGCACGTGGCCTACCACACAGGCAGCCAACAGGTGG
AGTCTTGCAGCGATCTTTCGCTGCGGGTGGGGGGCGTGGCGGGTGTGTCG
GATGAAGAGCCCCTGCTGGGCTCCTTTGAGGTATTGGACAAGGCCTACCA
TGACGCAGTCGAGTCGCCTCACTTCCGCGACCACTTGCTGCTCTCCTACG
AGAGGGACATTTACGAGGATCCGCTCGTCGCTTACGCAAAGCTGCGCACC
TATCTCGATGAAGAGCCCCTGCTGGGCTCCTTTGAGGTATTGGACAAGGC
CTACCATGACGCAGTCGAGTCGCCTCACTTCCGCGACCACTTGCTGCTCT
CCTACGAGAGGGACATTTACGAGGATCCGCTCGTCGCTTACGCAAAGCTG
CGCACCTATCTC
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