mRNA_M-pyrifera_M_contig78020.18349.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig78020.18349.1
Unique NamemRNA_M-pyrifera_M_contig78020.18349.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig78020.18349.1 vs. uniprot
Match: D7G0D7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0D7_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 1.890e-15
Identity = 37/46 (80.43%), Postives = 41/46 (89.13%), Query Frame = 1 
Query:    1 RHEKTQVKKENDRTRLTHMQNANAGPVFLTYRADASVDEIVKELTK 138
            RHEKTQVKKENDRTRLTH+QNANAGPVFLTYR   +VDEIV  +T+
Sbjct:  122 RHEKTQVKKENDRTRLTHVQNANAGPVFLTYRTSETVDEIVGRMTR 167
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BLAST of mRNA_M-pyrifera_M_contig78020.18349.1 vs. uniprot
Match: A0A836CBS0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBS0_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.020e-12
Identity = 33/44 (75.00%), Postives = 40/44 (90.91%), Query Frame = 1 
Query:    1 RHEKTQVKKENDRTRLTHMQNANAGPVFLTYRADASVDEIVKEL 132
            RHEKTQVKKENDRTRLT++QNAN GPVFLTYR +A+V+ IV ++
Sbjct:  122 RHEKTQVKKENDRTRLTYVQNANVGPVFLTYRDNAAVNSIVNQV 165
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BLAST of mRNA_M-pyrifera_M_contig78020.18349.1 vs. uniprot
Match: W7TNQ3_9STRA (Uncharacterized conserved protein UCP033563 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TNQ3_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 9.300e-12
Identity = 32/45 (71.11%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:    1 RHEKTQVKKENDRTRLTHMQNANAGPVFLTYRADASVDEIVKELT 135
            RHEKTQVKKENDRTRLT+ QNAN GPVFL Y+   ++DEIV+ +T
Sbjct:  121 RHEKTQVKKENDRTRLTYTQNANVGPVFLMYKPHDALDEIVRTVT 165
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BLAST of mRNA_M-pyrifera_M_contig78020.18349.1 vs. uniprot
Match: A0A202DIZ1_9BACT (Uncharacterized protein n=1 Tax=bacterium E08(2017) TaxID=1932693 RepID=A0A202DIZ1_9BACT)

HSP 1 Score: 58.2 bits (139), Expect = 1.240e-8
Identity = 28/44 (63.64%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:    1 RHEKTQVKKENDRTRLTHMQNANAGPVFLTYRADASVDEIVKEL 132
            +HEKT+  KE+DRTR     NANAGPVFLTYRADA++D IV ++
Sbjct:  120 KHEKTRPAKEDDRTRHVKTLNANAGPVFLTYRADAAIDAIVSKI 163
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BLAST of mRNA_M-pyrifera_M_contig78020.18349.1 vs. uniprot
Match: A0A848WT35_9BACT (DUF1015 domain-containing protein n=1 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A848WT35_9BACT)

HSP 1 Score: 55.8 bits (133), Expect = 8.120e-8
Identity = 26/43 (60.47%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:    1 RHEKTQVKKENDRTRLTHMQNANAGPVFLTYRADASVDEIVKE 129
            +HEKT+  KENDRTRLT + +AN GPVFLTY+ DA++D  V +
Sbjct:  120 KHEKTRPVKENDRTRLTDVLSANTGPVFLTYKDDATIDTFVAD 162
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BLAST of mRNA_M-pyrifera_M_contig78020.18349.1 vs. uniprot
Match: A0A257U5E2_9BACT (Uncharacterized protein n=2 Tax=unclassified Acidobacteria TaxID=305072 RepID=A0A257U5E2_9BACT)

HSP 1 Score: 55.8 bits (133), Expect = 8.120e-8
Identity = 29/46 (63.04%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:    1 RHEKTQVKKENDRTRLTHMQNANAGPVFLTYRADASVDEIVKELTK 138
            RHE T+  KE+DRTR TH  NANAGPVFLTYR  A +D IV  + K
Sbjct:  121 RHEFTRKDKEDDRTRHTHELNANAGPVFLTYRKRAEIDAIVDGIRK 166
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BLAST of mRNA_M-pyrifera_M_contig78020.18349.1 vs. uniprot
Match: A0A522MLS7_9BACT (DUF1015 domain-containing protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A522MLS7_9BACT)

HSP 1 Score: 55.8 bits (133), Expect = 8.120e-8
Identity = 29/46 (63.04%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:    1 RHEKTQVKKENDRTRLTHMQNANAGPVFLTYRADASVDEIVKELTK 138
            RHE T+  KE+DRTR TH  NANAGPVFLTYR  A +D IV  + K
Sbjct:  121 RHEFTRKDKEDDRTRHTHELNANAGPVFLTYRKRAEIDAIVDGIRK 166
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BLAST of mRNA_M-pyrifera_M_contig78020.18349.1 vs. uniprot
Match: A0A1F2QF65_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium RBG_13_68_16 TaxID=1797171 RepID=A0A1F2QF65_9BACT)

HSP 1 Score: 55.8 bits (133), Expect = 8.120e-8
Identity = 30/46 (65.22%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:    1 RHEKTQVKKENDRTRLTHMQNANAGPVFLTYRADASVDEIVKELTK 138
            RHE T+  KE+DRTR TH  NANAGPVFLTYR  A VD IV  + K
Sbjct:  121 RHEFTRKDKEDDRTRHTHELNANAGPVFLTYRKRADVDAIVDGVRK 166
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BLAST of mRNA_M-pyrifera_M_contig78020.18349.1 vs. uniprot
Match: A0A7X7UD90_9DELT (DUF1015 domain-containing protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7X7UD90_9DELT)

HSP 1 Score: 55.1 bits (131), Expect = 1.520e-7
Identity = 26/41 (63.41%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:    1 RHEKTQVKKENDRTRLTHMQNANAGPVFLTYRADASVDEIV 123
            +HE T+  KE+DRTR T + NAN GPVFLTYRAD  +DEI+
Sbjct:  121 KHEHTRKDKEDDRTRHTDICNANVGPVFLTYRADPQIDEII 161
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BLAST of mRNA_M-pyrifera_M_contig78020.18349.1 vs. uniprot
Match: A0A2V3J6G5_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6G5_9FLOR)

HSP 1 Score: 53.9 bits (128), Expect = 3.890e-7
Identity = 24/43 (55.81%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:    1 RHEKTQVKKENDRTRLTHMQNANAGPVFLTYRADASVDEIVKE 129
            +HEKT+  KE+DRT+LT + +AN GPVFLTYR D  +D+I+ +
Sbjct:  120 KHEKTRKDKEDDRTKLTDVLSANTGPVFLTYRDDTLIDDIISK 162
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig78020.18349.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0D7_ECTSI1.890e-1580.43Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CBS0_9STRA1.020e-1275.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7TNQ3_9STRA9.300e-1271.11Uncharacterized conserved protein UCP033563 n=3 Ta... [more]
A0A202DIZ1_9BACT1.240e-863.64Uncharacterized protein n=1 Tax=bacterium E08(2017... [more]
A0A848WT35_9BACT8.120e-860.47DUF1015 domain-containing protein n=1 Tax=Verrucom... [more]
A0A257U5E2_9BACT8.120e-863.04Uncharacterized protein n=2 Tax=unclassified Acido... [more]
A0A522MLS7_9BACT8.120e-863.04DUF1015 domain-containing protein n=1 Tax=Acidobac... [more]
A0A1F2QF65_9BACT8.120e-865.22Uncharacterized protein n=1 Tax=Acidobacteria bact... [more]
A0A7X7UD90_9DELT1.520e-763.41DUF1015 domain-containing protein n=1 Tax=Myxococc... [more]
A0A2V3J6G5_9FLOR3.890e-755.81Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig78020contigM-pyrifera_M_contig78020:186..326 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.8
Seed ortholog evalue1.5e-12
Seed eggNOG ortholog2880.D7G0D7
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.Protein of unknown function (DUF1015)
EggNOG OGs2SMYX@2759,COG4198@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size141
Cds size141
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816681.8094168-CDS-M-pyrifera_M_contig78020:185..3261622816681.8094168-CDS-M-pyrifera_M_contig78020:185..326Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78020 186..326 +
1692278116.7174368-CDS-M-pyrifera_M_contig78020:185..3261692278116.7174368-CDS-M-pyrifera_M_contig78020:185..326Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78020 186..326 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig78020.18349.1prot_M-pyrifera_M_contig78020.18349.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig78020 186..326 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig78020.18349.1

>prot_M-pyrifera_M_contig78020.18349.1 ID=prot_M-pyrifera_M_contig78020.18349.1|Name=mRNA_M-pyrifera_M_contig78020.18349.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=47bp
RHEKTQVKKENDRTRLTHMQNANAGPVFLTYRADASVDEIVKELTK*
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mRNA from alignment at M-pyrifera_M_contig78020:186..326+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig78020.18349.1 ID=mRNA_M-pyrifera_M_contig78020.18349.1|Name=mRNA_M-pyrifera_M_contig78020.18349.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=141bp|location=Sequence derived from alignment at M-pyrifera_M_contig78020:186..326+ (Macrocystis pyrifera P11B4 male)
AGGCACGAGAAGACCCAGGTGAAGAAGGAGAACGACCGGACGAGGCTAAC
GCACATGCAGAACGCTAACGCGGGGCCGGTGTTCCTCACCTACCGCGCCG
ACGCGAGCGTGGACGAGATCGTCAAGGAGCTCACCAAGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig78020:186..326+

>mRNA_M-pyrifera_M_contig78020.18349.1 ID=mRNA_M-pyrifera_M_contig78020.18349.1|Name=mRNA_M-pyrifera_M_contig78020.18349.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=282bp|location=Sequence derived from alignment at M-pyrifera_M_contig78020:186..326+ (Macrocystis pyrifera P11B4 male)
AGGCACGAGAAGACCCAGGTGAAGAAGGAGAACGACCGGACGAGGCTAAC
GCACATGCAGAACGCTAACGCGGGGCCGGTGTTCCTCACCTACCGCGCCG
ACGCGAGCGTGGACGAGATCGTCAAGGAGCTCACCAAGTGAAGGCACGAG
AAGACCCAGGTGAAGAAGGAGAACGACCGGACGAGGCTAACGCACATGCA
GAACGCTAACGCGGGGCCGGTGTTCCTCACCTACCGCGCCGACGCGAGCG
TGGACGAGATCGTCAAGGAGCTCACCAAGTGA
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