mRNA_M-pyrifera_M_contig77990.18345.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig77990.18345.1
Unique NamemRNA_M-pyrifera_M_contig77990.18345.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig77990.18345.1 vs. uniprot
Match: A0A5B1QR39_9AGAM (ARM repeat-containing protein n=1 Tax=Dentipellis sp. KUC8613 TaxID=1883078 RepID=A0A5B1QR39_9AGAM)

HSP 1 Score: 54.3 bits (129), Expect = 8.870e-6
Identity = 31/136 (22.79%), Postives = 68/136 (50.00%), Query Frame = 1 
Query:    7 EVEGVLDAFLRATPDTFTAIDGEVQSMCTHEGVPVILAGMLVDGASRAQVRQLAGSLIRTQVIEKHWTRFTE---------EERSEVRSILLQGLRGEFSWLRTACARALGAISENDFPSTWPGFLEEVGKVLDEG 387
            ++  +L + L + P+   A + ++    T+    + LA ++    +   +RQ++  ++  + +E+HW+ F +         E +S++R+I+ QGL      +R+ CA  L  I+ +D+P  +P  L  +  +L  G
Sbjct:    6 DIAQLLTSTLNSDPNVRIAAELKLSESLTNPQSALSLAQLIHAQDADLSLRQISSHILLRKYVEEHWSPFFQQFKGNAPPVEVKSQIRTIVFQGLSDPIRKIRSLCAHTLSTIAMSDWPDEYPDLLTSLLGLLSSG 141
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig77990.18345.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A5B1QR39_9AGAM8.870e-622.79ARM repeat-containing protein n=1 Tax=Dentipellis ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig77990contigM-pyrifera_M_contig77990:6..425 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score62.0
Seed ortholog evalue2.5e-07
Seed eggNOG ortholog7460.GB55492-PA
KEGG koko:K20224
KEGG TC1.I.1
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005829,GO:0006606,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008150,GO:0008565,GO:0012505,GO:0015031,GO:0015833,GO:0017038,GO:0031967,GO:0031975,GO:0033036,GO:0033365,GO:0034504,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0072594
EggNOG free text desc.Ran GTPase binding. It is involved in the biological process described with intracellular protein transport
EggNOG OGs38BE2@33154,3BFGY@33208,3CX1B@33213,3SH7W@50557,41UGW@6656,46H4A@7399,COG5657@1,KOG2274@2759
COG Functional cat.UY
Best tax levelHymenoptera
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Exons1
Model size420
Cds size420
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816681.445364-CDS-M-pyrifera_M_contig77990:5..4251622816681.445364-CDS-M-pyrifera_M_contig77990:5..425Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77990 6..425 -
1692278116.4422448-CDS-M-pyrifera_M_contig77990:5..4251692278116.4422448-CDS-M-pyrifera_M_contig77990:5..425Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77990 6..425 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig77990.18345.1prot_M-pyrifera_M_contig77990.18345.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig77990 6..425 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig77990.18345.1

>prot_M-pyrifera_M_contig77990.18345.1 ID=prot_M-pyrifera_M_contig77990.18345.1|Name=mRNA_M-pyrifera_M_contig77990.18345.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=140bp
MDEVEGVLDAFLRATPDTFTAIDGEVQSMCTHEGVPVILAGMLVDGASRA
QVRQLAGSLIRTQVIEKHWTRFTEEERSEVRSILLQGLRGEFSWLRTACA
RALGAISENDFPSTWPGFLEEVGKVLDEGGVGVDGGMRCL
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mRNA from alignment at M-pyrifera_M_contig77990:6..425-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig77990.18345.1 ID=mRNA_M-pyrifera_M_contig77990.18345.1|Name=mRNA_M-pyrifera_M_contig77990.18345.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=420bp|location=Sequence derived from alignment at M-pyrifera_M_contig77990:6..425- (Macrocystis pyrifera P11B4 male)
ATGGACGAAGTTGAAGGGGTATTGGATGCTTTCCTTCGAGCTACGCCAGA
CACATTCACTGCTATTGATGGTGAAGTGCAAAGTATGTGCACACATGAAG
GTGTACCCGTGATTTTAGCCGGAATGCTGGTTGATGGGGCTAGTCGTGCC
CAAGTTCGTCAATTGGCCGGCTCTTTGATACGTACTCAAGTCATTGAGAA
GCATTGGACACGATTTACAGAGGAGGAGCGTTCTGAAGTGCGCTCCATCT
TGCTCCAAGGGCTTCGAGGTGAATTTAGCTGGTTACGCACTGCCTGTGCG
CGTGCTCTTGGTGCTATCTCTGAAAATGACTTTCCTAGCACATGGCCTGG
GTTTTTGGAGGAAGTGGGAAAGGTGTTGGATGAAGGAGGGGTTGGGGTAG
ATGGTGGAATGCGCTGTTTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig77990:6..425-

>mRNA_M-pyrifera_M_contig77990.18345.1 ID=mRNA_M-pyrifera_M_contig77990.18345.1|Name=mRNA_M-pyrifera_M_contig77990.18345.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=840bp|location=Sequence derived from alignment at M-pyrifera_M_contig77990:6..425- (Macrocystis pyrifera P11B4 male)
ATGGACGAAGTTGAAGGGGTATTGGATGCTTTCCTTCGAGCTACGCCAGA
CACATTCACTGCTATTGATGGTGAAGTGCAAAGTATGTGCACACATGAAG
GTGTACCCGTGATTTTAGCCGGAATGCTGGTTGATGGGGCTAGTCGTGCC
CAAGTTCGTCAATTGGCCGGCTCTTTGATACGTACTCAAGTCATTGAGAA
GCATTGGACACGATTTACAGAGGAGGAGCGTTCTGAAGTGCGCTCCATCT
TGCTCCAAGGGCTTCGAGGTGAATTTAGCTGGTTACGCACTGCCTGTGCG
CGTGCTCTTGGTGCTATCTCTGAAAATGACTTTCCTAGCACATGGCCTGG
GTTTTTGGAGGAAGTGGGAAAGGTGTTGGATGAAGGAGGGGTTGGGGTAG
ATGGTGGAATGCGCTGTTTGATGGACGAAGTTGAAGGGGTATTGGATGCT
TTCCTTCGAGCTACGCCAGACACATTCACTGCTATTGATGGTGAAGTGCA
AAGTATGTGCACACATGAAGGTGTACCCGTGATTTTAGCCGGAATGCTGG
TTGATGGGGCTAGTCGTGCCCAAGTTCGTCAATTGGCCGGCTCTTTGATA
CGTACTCAAGTCATTGAGAAGCATTGGACACGATTTACAGAGGAGGAGCG
TTCTGAAGTGCGCTCCATCTTGCTCCAAGGGCTTCGAGGTGAATTTAGCT
GGTTACGCACTGCCTGTGCGCGTGCTCTTGGTGCTATCTCTGAAAATGAC
TTTCCTAGCACATGGCCTGGGTTTTTGGAGGAAGTGGGAAAGGTGTTGGA
TGAAGGAGGGGTTGGGGTAGATGGTGGAATGCGCTGTTTG
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