mRNA_M-pyrifera_M_contig77975.18340.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig77975.18340.1
Unique NamemRNA_M-pyrifera_M_contig77975.18340.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig77975.18340.1 vs. uniprot
Match: A0A1E3IRY4_9TREE (25S rRNA adenine-N(1) methyltransferase n=1 Tax=Cryptococcus depauperatus CBS 7841 TaxID=1295531 RepID=A0A1E3IRY4_9TREE)

HSP 1 Score: 118 bits (296), Expect = 3.160e-27
Identity = 62/191 (32.46%), Postives = 101/191 (52.88%), Query Frame = 1
Query:   52 RVDLFSTDFQSQWSVMHGTFLDTQAEFVVHCVDWILQQYSHLPEGDRPRKVLVIGHSMGGGLDDVSLVMGDRSTPLPVDAVITIGTPHLLPPFPLEQTTTVLYSELNSFWSANKDGALKNVTIASISGGLSDSNVISELSELPSSIMRSDRVVYAISENIPFVWRGITHVWLVRGRHLLDVVARMTFELLN 624
            +VD F+ DF   +S +H   L  QA++V  C+  I  +Y HL + +RP KV ++GHSMGG    V+ +  D      +D ++T+ TPHL+PP P E     +Y+E++      +  +  +  + S+ GG+SD+ V S+   LP     + R +   +  IP VW G+ H  +V  R +   +  M FE+L 
Sbjct:  371 KVDFFTVDFNEDFSALHAQTLRYQADYVCRCIRRIFLEYEHLEDHERPSKVTLLGHSMGGV---VARLAADSEMSNLIDIIVTMSTPHLVPPIPFEYDMDSIYTEIDE-----RRQSENHPPLISLCGGVSDTQVASDYCSLPQETTSNSRDLAVFTTGIPVVWTGVDHQAMVWCRQICSRITHMLFEMLQ 553          
BLAST of mRNA_M-pyrifera_M_contig77975.18340.1 vs. uniprot
Match: A0A0J0XFA4_9TREE (GPI inositol-deacylase n=1 Tax=Cutaneotrichosporon oleaginosum TaxID=879819 RepID=A0A0J0XFA4_9TREE)

HSP 1 Score: 115 bits (289), Expect = 9.410e-27
Identity = 65/181 (35.91%), Postives = 100/181 (55.25%), Query Frame = 1
Query:   55 VDLFSTDFQSQWSVMHGTFLDTQAEFVVHCVDWILQQYSHLPEGDRPRKVLVIGHSMGGGLDDVSLVMGDRST--PLPVDAVITIGTPHLLPPFPLEQTTTVLYSELNSFWSANKDGALKNVTIASISGGLSDSNVISELSELPSSIMRSDRVVYAISENIPFVWRGITH---VWLVRGRH 582
            VDLF+ DF    S +H   L +QA+F+V  +  + + Y HLP  +RP KV+++GHSMGG +  ++  M   +   P PVD ++T+ TPHL PP PL+     +Y+E+NS   ++    L      SI GG SD  ++S+   L +S++  D      +  IP VW G+ H   VW  + R+
Sbjct:  127 VDLFTVDFNEDLSALHAPTLRSQAQFLVKAIARVYRAYEHLPADERPAKVILLGHSMGGIVARLASTMAQPTMWQPSPVDVILTMSTPHLQPPAPLDPEMERIYAEINSVRYSDPSPLL-----ISICGGTSDVQIVSDACALTNSLIGRDDGFAVFTTGIPGVWTGVEHQAMVWCDQVRY 302          
BLAST of mRNA_M-pyrifera_M_contig77975.18340.1 vs. uniprot
Match: A0A1E3JSX9_9TREE (GPI inositol-deacylase n=1 Tax=Cryptococcus depauperatus CBS 7855 TaxID=1295532 RepID=A0A1E3JSX9_9TREE)

HSP 1 Score: 116 bits (291), Expect = 1.350e-26
Identity = 61/191 (31.94%), Postives = 100/191 (52.36%), Query Frame = 1
Query:   52 RVDLFSTDFQSQWSVMHGTFLDTQAEFVVHCVDWILQQYSHLPEGDRPRKVLVIGHSMGGGLDDVSLVMGDRSTPLPVDAVITIGTPHLLPPFPLEQTTTVLYSELNSFWSANKDGALKNVTIASISGGLSDSNVISELSELPSSIMRSDRVVYAISENIPFVWRGITHVWLVRGRHLLDVVARMTFELLN 624
            + D F+ DF   +S +H   L  QA++V  C+  I  +Y HL + +RP KV ++GHSMGG    V+ +  D      +D ++T+ TPHL+PP P E     +Y+E++      +  +  +  + S+ GG+SD+ V S+   LP     + R +   +  IP VW G+ H  +V  R +   +  M FE+L 
Sbjct:  138 KADFFTVDFNEDFSALHAQTLRYQADYVCRCIRRIFLEYEHLEDHERPSKVTLLGHSMGGV---VARLAADSEMSNFIDIIVTMSTPHLVPPIPFEYDMDSIYTEIDE-----RRQSENHPPLISLCGGVSDTQVASDYCSLPQETTSNSRDLAVFTTGIPVVWTGVDHQAMVWCRQICSRITNMLFEMLQ 320          
BLAST of mRNA_M-pyrifera_M_contig77975.18340.1 vs. uniprot
Match: J9VWB7_CRYNH (GPI inositol-deacylase n=4 Tax=Cryptococcus neoformans var. grubii TaxID=178876 RepID=J9VWB7_CRYNH)

HSP 1 Score: 115 bits (289), Expect = 2.700e-26
Identity = 65/208 (31.25%), Postives = 115/208 (55.29%), Query Frame = 1
Query:    1 EELPEKPRARDAELLPSRVDLFSTDFQSQWSVMHGTFLDTQAEFVVHCVDWILQQYSHLPEGDRPRKVLVIGHSMGGGLDDVSLVMGDRSTPLPVDAVITIGTPHLLPPFPLEQTTTVLYSELNSFWSANKDGALKNVTIASISGGLSDSNVISELSELPSSIMRSDRVVYAISENIPFVWRGITHVWLVRGRHLLDVVARMTFELLN 624
            E++ EK R+    +   ++D F+ D + ++S  H   L  QA F+ HC+  ILQ+Y+HLP+  RP +V ++ HSMGG +  +++   D +T + VD ++T+ TPH++PP  LE+    +YS ++  W   +     +  + SI GG+SD+ V+S+   LP     ++  +   +  IP VW  + H  +V    +   +ARM  ++ N
Sbjct:  136 EQMKEKERSV---MTAKKIDFFTADLKEEFSAFHARTLREQAVFIQHCIKGILQEYTHLPQEKRPTQVTLLAHSMGGVVARLAM---DPATSISVDIIVTLSTPHIIPPLALERDMDSIYSLIS--W--RRQHISTHPPLISICGGISDTQVVSDSCALPFFQTGNNSDIAVFTTGIPGVWTAVEHQAIVWCHQIRWRIARMLLDMSN 333          
BLAST of mRNA_M-pyrifera_M_contig77975.18340.1 vs. uniprot
Match: A0A1Y2B379_9TREE (GPI inositol-deacylase n=1 Tax=Naematelia encephala TaxID=71784 RepID=A0A1Y2B379_9TREE)

HSP 1 Score: 114 bits (285), Expect = 9.210e-26
Identity = 65/190 (34.21%), Postives = 106/190 (55.79%), Query Frame = 1
Query:   52 RVDLFSTDFQSQWSVMHGTFLDTQAEFVVHCVDWILQQYSHLPEGDRPRKVLVIGHSMGGGLDDVSLVMGDRSTPLPVDAVITIGTPHLLPPFPLEQTTTVLYSELNSFWSANKDGALKNVTIASISGGLSDSNVISELSELPSSIMRSDRVVYAI-SENIPFVWRGITHVWLVRGRHLLDVVARMTFEL 618
            ++D F+ DF+   S +H   L  QA ++ +CV  +L  YSHLP  D+PR+V V+ HSMGG +  ++L      T LP+D ++T+ +PH LPP  L++    +Y +++S          K V + S+ GG+SD+ ++S+   LP S  R   + +AI +  IP  W G+ H  +V    +  +VAR   E+
Sbjct:  130 KLDFFTVDFREDLSALHAGTLREQASYLSNCVHRVLAAYSHLPAEDQPRRVSVLAHSMGGIVARLALA---EQTTLPIDILVTLSSPHQLPPINLDREMDRIYQQIDS-------NQPKEVALVSLCGGVSDTQIVSDACALPKSYPRE--LGFAIFTSGIPGAWTGVDHQAMVWCHQIRLMVARALLEM 307          
BLAST of mRNA_M-pyrifera_M_contig77975.18340.1 vs. uniprot
Match: A0A0D0YY47_9TREE (GPI inositol-deacylase n=1 Tax=Cryptococcus gattii VGIV IND107 TaxID=1296105 RepID=A0A0D0YY47_9TREE)

HSP 1 Score: 113 bits (282), Expect = 1.420e-25
Identity = 65/193 (33.68%), Postives = 108/193 (55.96%), Query Frame = 1
Query:   52 RVDLFSTDFQSQWSVMHGTFLDTQAEFVVHCVDWILQQYSHLPEGDRPRKVLVIGHSMGGGLDDVSLVMGDRSTPLPVDAVITIGTPHLLPPFPLEQTTTVLYSELNSFWSANKDGALKNVTIASISGGLSDSNVISELSELPS----SIMRSDRVVYAISENIPFVWRGITHVWLVRGRHLLDVVARMTFEL 618
            ++D F+ D + ++S  H   L  QA F+ HC+  ILQ+Y+HLPE  RP ++ ++ HSMGG +  +++   D +T + VD ++T+ TPH+LPP  LE+    +YS +   W   +     +  + SI GG+SD+ V+S+   LPS    +   SD  V+  +  IP VW  + H  +V    +   +ARM  ++
Sbjct:  148 KIDFFTADLKEEFSAFHARTLREQAVFIQHCIRRILQEYTHLPEEKRPTQITLLAHSMGGVIARLAM---DPATSISVDIIVTLSTPHILPPLALERDMDSIYSLIT--W--RRQHISTHPPLISICGGISDTQVVSDSCALPSWQGQTGNNSDFAVF--TTGIPGVWTAVEHQAIVWCHQIRWRIARMLLDM 331          
BLAST of mRNA_M-pyrifera_M_contig77975.18340.1 vs. uniprot
Match: A0A1B9HNP9_9TREE (GPI inositol-deacylase n=2 Tax=Kwoniella heveanensis TaxID=89924 RepID=A0A1B9HNP9_9TREE)

HSP 1 Score: 112 bits (280), Expect = 3.730e-25
Identity = 65/189 (34.39%), Postives = 102/189 (53.97%), Query Frame = 1
Query:   55 VDLFSTDFQSQWSVMHGTFLDTQAEFVVHCVDWILQQYSHLPEGDRPRKVLVIGHSMGGGLDDVSLVMGDRSTPLPVDAVITIGTPHLLPPFPLEQTTTVLYSELNSFWSANKDGALKNVTIASISGGLSDSNVISE-LSELPSSIMRSDRVVYAISENIPFVWRGITHVWLVRGRHLLDVVARMTFEL 618
            +DLF+ D   ++S  H   L  QA F+  C+  I  QY HLP  DRP K+ ++GHSMGG +  +++     S    +DA++T+ TPH +PP  L+     +Y  +N   + N D    + T+ S+ GG+SD+ ++S+    LPS +  SD    A + N+P VW G+ H  +V    +   VAR   E+
Sbjct:  142 IDLFTADLNEEFSAFHAPTLREQARFIASCIHKIFAQYRHLPPADRPTKITLLGHSMGGIVARLAVTSQTVSA---IDAILTMSTPHAIPPLTLDSDMDSIYRTINKGQNKNDD----HPTLISLCGGVSDTQIVSDSCGVLPSFV--SDGFA-AFTTNMPHVWTGVDHQAMVWCHQVRWRVARTLLEM 320          
BLAST of mRNA_M-pyrifera_M_contig77975.18340.1 vs. uniprot
Match: BST1_CRYNJ (GPI inositol-deacylase n=2 Tax=Cryptococcus neoformans var. neoformans TaxID=40410 RepID=BST1_CRYNJ)

HSP 1 Score: 112 bits (279), Expect = 5.680e-25
Identity = 61/203 (30.05%), Postives = 112/203 (55.17%), Query Frame = 1
Query:   13 EKPRARDAELLPSR-VDLFSTDFQSQWSVMHGTFLDTQAEFVVHCVDWILQQYSHLPEGDRPRKVLVIGHSMGGGLDDVSLVMGDRSTPLPVDAVITIGTPHLLPPFPLEQTTTVLYSELNSFWSANKDGALKNVTIASISGGLSDSNVISELSELPSSIMRSDRVVYAISENIPFVWRGITHVWLVRGRHLLDVVARMTFEL 618
            E+ +AR+  ++  + +D F+ D + ++S  H   +  QA F+ HC+  ILQ+Y+HLP+  RP +V ++ HSMGG +  +++   D  T + VD ++T+ TPH+LPP  LE+    +YS +   W   +     +  + SI GG+SD+ ++S+   LP     ++  +   +  IP VW  + H  ++    +   +ARM  ++
Sbjct:  136 EQVKARERNVVTGKKIDFFTADLKEEFSAFHARTVREQAVFIQHCIKGILQEYTHLPQEKRPTQVTLLAHSMGGVVARLAM---DPITSISVDIIVTLSTPHILPPLALERDMDSIYSLIR--W--RRQHISTHPPLISICGGISDTQIVSDSCALPFFQAGNNSDIAVFTTGIPGVWTAVEHQAIIWCHQIRWRIARMLLDM 331          
BLAST of mRNA_M-pyrifera_M_contig77975.18340.1 vs. uniprot
Match: UPI0007214A64 (ER-associated protein catabolism-related protein, putative n=1 Tax=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) TaxID=214684 RepID=UPI0007214A64)

HSP 1 Score: 112 bits (279), Expect = 5.860e-25
Identity = 61/203 (30.05%), Postives = 112/203 (55.17%), Query Frame = 1
Query:   13 EKPRARDAELLPSR-VDLFSTDFQSQWSVMHGTFLDTQAEFVVHCVDWILQQYSHLPEGDRPRKVLVIGHSMGGGLDDVSLVMGDRSTPLPVDAVITIGTPHLLPPFPLEQTTTVLYSELNSFWSANKDGALKNVTIASISGGLSDSNVISELSELPSSIMRSDRVVYAISENIPFVWRGITHVWLVRGRHLLDVVARMTFEL 618
            E+ +AR+  ++  + +D F+ D + ++S  H   +  QA F+ HC+  ILQ+Y+HLP+  RP +V ++ HSMGG +  +++   D  T + VD ++T+ TPH+LPP  LE+    +YS +   W   +     +  + SI GG+SD+ ++S+   LP     ++  +   +  IP VW  + H  ++    +   +ARM  ++
Sbjct:  136 EQVKARERNVVTGKKIDFFTADLKEEFSAFHARTVREQAVFIQHCIKGILQEYTHLPQEKRPTQVTLLAHSMGGVVARLAM---DPITSISVDIIVTLSTPHILPPLALERDMDSIYSLIR--W--RRQHISTHPPLISICGGISDTQIVSDSCALPFFQAGNNSDIAVFTTGIPGVWTAVEHQAIIWCHQIRWRIARMLLDM 331          
BLAST of mRNA_M-pyrifera_M_contig77975.18340.1 vs. uniprot
Match: I1CA35_RHIO9 (GPI inositol-deacylase n=1 Tax=Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) TaxID=246409 RepID=I1CA35_RHIO9)

HSP 1 Score: 108 bits (270), Expect = 9.270e-24
Identity = 62/195 (31.79%), Postives = 104/195 (53.33%), Query Frame = 1
Query:   55 VDLFSTDFQSQWSVMHGTFLDTQAEFVVHCVDWILQQYSHLPEGDRPR-----KVLVIGHSMGGGLDDVSLVMGDRSTPLPVDAVITIGTPHLLPPFPLEQTTTVLYSELNSFWSANKDGALKNVTIASISGGLSDSNVISELSELPSSIMRSDRVVYAISENIPFVWRGITHVWLVRGRHLLDVVARMTFELLN 624
            +D F+ DF  ++S +HG  +  QAE++   +D+IL+ Y    + D         V+VIGHSMGG +        +      ++ VIT+ TPHLLPP P +   + LY +++ FW   K   LK+V I SI+GG  D+ V S+ + +  SI+ +       S  +P+VW    HV ++    L+ VV++   ++++
Sbjct:   71 LDFFTVDFNEEFSALHGQSILEQAEYLNDAIDYILKLYPQTRKTDPTTLPDATSVIVIGHSMGGIVARTMFTTHNYQQGT-INTVITMSTPHLLPPVPFDWKISELYDDIHRFWQERKKDVLKDVAIVSIAGGTLDNTVCSDSTNIE-SIVPATHGFTIFSTAVPYVWTATDHVSILTCNQLVKVVSKALLDVVD 263          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig77975.18340.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1E3IRY4_9TREE3.160e-2732.4625S rRNA adenine-N(1) methyltransferase n=1 Tax=Cr... [more]
A0A0J0XFA4_9TREE9.410e-2735.91GPI inositol-deacylase n=1 Tax=Cutaneotrichosporon... [more]
A0A1E3JSX9_9TREE1.350e-2631.94GPI inositol-deacylase n=1 Tax=Cryptococcus depaup... [more]
J9VWB7_CRYNH2.700e-2631.25GPI inositol-deacylase n=4 Tax=Cryptococcus neofor... [more]
A0A1Y2B379_9TREE9.210e-2634.21GPI inositol-deacylase n=1 Tax=Naematelia encephal... [more]
A0A0D0YY47_9TREE1.420e-2533.68GPI inositol-deacylase n=1 Tax=Cryptococcus gattii... [more]
A0A1B9HNP9_9TREE3.730e-2534.39GPI inositol-deacylase n=2 Tax=Kwoniella heveanens... [more]
BST1_CRYNJ5.680e-2530.05GPI inositol-deacylase n=2 Tax=Cryptococcus neofor... [more]
UPI0007214A645.860e-2530.05ER-associated protein catabolism-related protein, ... [more]
I1CA35_RHIO99.270e-2431.79GPI inositol-deacylase n=1 Tax=Rhizopus delemar (s... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig77975contigM-pyrifera_M_contig77975:103..783 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score117.1
Seed ortholog evalue9.9e-24
Seed eggNOG ortholog552467.XP_003194695.1
Preferred nameBST1
KEGG koko:K05294
KEGG Pathwayko00563,ko01100,map00563,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006505,GO:0006508,GO:0006511,GO:0006621,GO:0006629,GO:0006643,GO:0006644,GO:0006650,GO:0006664,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006888,GO:0006950,GO:0006996,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009272,GO:0009405,GO:0009605,GO:0009607,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0012505,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016192,GO:0016787,GO:0016788,GO:0019538,GO:0019637,GO:0019941,GO:0020012,GO:0030163,GO:0030433,GO:0030682,GO:0031224,GO:0031984,GO:0032507,GO:0033036,GO:0033365,GO:0033554,GO:0034367,GO:0034368,GO:0034613,GO:0034976,GO:0035437,GO:0036503,GO:0042175,GO:0042221,GO:0042546,GO:0043161,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044255,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044403,GO:0044413,GO:0044415,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045185,GO:0046486,GO:0046488,GO:0046907,GO:0048193,GO:0050185,GO:0050896,GO:0051179,GO:0051234,GO:0051235,GO:0051603,GO:0051641,GO:0051649,GO:0051651,GO:0051701,GO:0051704,GO:0051707,GO:0051716,GO:0051805,GO:0051807,GO:0051832,GO:0051834,GO:0052173,GO:0052200,GO:0052564,GO:0052572,GO:0052689,GO:0065007,GO:0065008,GO:0070727,GO:0070972,GO:0071554,GO:0071704,GO:0071825,GO:0071840,GO:0071852,GO:0072595,GO:0075136,GO:0098827,GO:1901135,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1903509
EggNOG free text desc.PGAP1-like protein
EggNOG OGs397RS@33154,3NVMH@4751,3UYTM@5204,3VFF9@5234,KOG3724@1,KOG3724@2759
COG Functional cat.U
Best tax levelTremellales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons2
Model size624
Cds size624
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816681.2187448-CDS-M-pyrifera_M_contig77975:102..3331622816681.2187448-CDS-M-pyrifera_M_contig77975:102..333Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77975 103..333 +
1692278116.3280716-CDS-M-pyrifera_M_contig77975:102..3331692278116.3280716-CDS-M-pyrifera_M_contig77975:102..333Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77975 103..333 +
1622816681.2311351-CDS-M-pyrifera_M_contig77975:390..7831622816681.2311351-CDS-M-pyrifera_M_contig77975:390..783Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77975 391..783 +
1692278116.3443613-CDS-M-pyrifera_M_contig77975:390..7831692278116.3443613-CDS-M-pyrifera_M_contig77975:390..783Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77975 391..783 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig77975.18340.1prot_M-pyrifera_M_contig77975.18340.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig77975 103..783 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig77975.18340.1

>prot_M-pyrifera_M_contig77975.18340.1 ID=prot_M-pyrifera_M_contig77975.18340.1|Name=mRNA_M-pyrifera_M_contig77975.18340.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=208bp
EELPEKPRARDAELLPSRVDLFSTDFQSQWSVMHGTFLDTQAEFVVHCVD
WILQQYSHLPEGDRPRKVLVIGHSMGGGLDDVSLVMGDRSTPLPVDAVIT
IGTPHLLPPFPLEQTTTVLYSELNSFWSANKDGALKNVTIASISGGLSDS
NVISELSELPSSIMRSDRVVYAISENIPFVWRGITHVWLVRGRHLLDVVA
RMTFELLN
back to top

mRNA from alignment at M-pyrifera_M_contig77975:103..783+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig77975.18340.1 ID=mRNA_M-pyrifera_M_contig77975.18340.1|Name=mRNA_M-pyrifera_M_contig77975.18340.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=681bp|location=Sequence derived from alignment at M-pyrifera_M_contig77975:103..783+ (Macrocystis pyrifera P11B4 male)
GAGGAGCTTCCAGAGAAACCTCGTGCCAGAGATGCAGAGCTCCTGCCCTC GCGGGTGGACCTGTTCTCCACAGACTTCCAGAGCCAATGGTCTGTCATGC ACGGCACCTTTCTGGACACGCAAGCAGAGTTTGTAGTCCACTGTGTGGAC TGGATTCTCCAGCAATACTCCCACCTGCCGGAGGGAGATCGGCCGCGTAA GGTTCTCGTCATTGGCCACTCCATGGGCGGCGTGGTGACACGCCAGGCAT TGATGCGTATGGTACGACTCAGAAGTGACGATTCTGAGGGCTTGGACGAT GTGTCCTTGGTGATGGGCGACAGGTCCACCCCTTTGCCTGTCGATGCGGT GATTACCATAGGCACTCCACATCTCCTTCCACCATTTCCGTTGGAGCAGA CGACTACCGTACTTTACAGTGAGCTGAATAGCTTTTGGTCAGCCAATAAG GATGGGGCCCTGAAGAACGTCACCATTGCTTCGATATCCGGAGGGTTGTC AGACTCCAACGTTATCTCTGAGCTCTCTGAGCTGCCAAGCAGCATTATGA GGAGCGACAGAGTAGTCTACGCCATTTCTGAGAACATTCCTTTTGTGTGG AGAGGGATTACTCATGTCTGGCTCGTCAGGGGGAGGCATCTGTTGGACGT TGTAGCCAGAATGACTTTCGAGCTCCTGAAC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig77975:103..783+

>mRNA_M-pyrifera_M_contig77975.18340.1 ID=mRNA_M-pyrifera_M_contig77975.18340.1|Name=mRNA_M-pyrifera_M_contig77975.18340.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1248bp|location=Sequence derived from alignment at M-pyrifera_M_contig77975:103..783+ (Macrocystis pyrifera P11B4 male)
GAGGAGCTTCCAGAGAAACCTCGTGCCAGAGATGCAGAGCTCCTGCCCTC
GCGGGTGGACCTGTTCTCCACAGACTTCCAGAGCCAATGGTCTGTCATGC
ACGGCACCTTTCTGGACACGCAAGCAGAGTTTGTAGTCCACTGTGTGGAC
TGGATTCTCCAGCAATACTCCCACCTGCCGGAGGGAGATCGGCCGCGTAA
GGTTCTCGTCATTGGCCACTCCATGGGCGGCGAGGAGCTTCCAGAGAAAC
CTCGTGCCAGAGATGCAGAGCTCCTGCCCTCGCGGGTGGACCTGTTCTCC
ACAGACTTCCAGAGCCAATGGTCTGTCATGCACGGCACCTTTCTGGACAC
GCAAGCAGAGTTTGTAGTCCACTGTGTGGACTGGATTCTCCAGCAATACT
CCCACCTGCCGGAGGGAGATCGGCCGCGTAAGGTTCTCGTCATTGGCCAC
TCCATGGGCGGCGGCTTGGACGATGTGTCCTTGGTGATGGGCGACAGGTC
CACCCCTTTGCCTGTCGATGCGGTGATTACCATAGGCACTCCACATCTCC
TTCCACCATTTCCGTTGGAGCAGACGACTACCGTACTTTACAGTGAGCTG
AATAGCTTTTGGTCAGCCAATAAGGATGGGGCCCTGAAGAACGTCACCAT
TGCTTCGATATCCGGAGGGTTGTCAGACTCCAACGTTATCTCTGAGCTCT
CTGAGCTGCCAAGCAGCATTATGAGGAGCGACAGAGTAGTCTACGCCATT
TCTGAGAACATTCCTTTTGTGTGGAGAGGGATTACTCATGTCTGGCTCGT
CAGGGGGAGGCATCTGTTGGACGTTGTAGCCAGAATGACTTTCGAGCTCC
TGAACGGCTTGGACGATGTGTCCTTGGTGATGGGCGACAGGTCCACCCCT
TTGCCTGTCGATGCGGTGATTACCATAGGCACTCCACATCTCCTTCCACC
ATTTCCGTTGGAGCAGACGACTACCGTACTTTACAGTGAGCTGAATAGCT
TTTGGTCAGCCAATAAGGATGGGGCCCTGAAGAACGTCACCATTGCTTCG
ATATCCGGAGGGTTGTCAGACTCCAACGTTATCTCTGAGCTCTCTGAGCT
GCCAAGCAGCATTATGAGGAGCGACAGAGTAGTCTACGCCATTTCTGAGA
ACATTCCTTTTGTGTGGAGAGGGATTACTCATGTCTGGCTCGTCAGGGGG
AGGCATCTGTTGGACGTTGTAGCCAGAATGACTTTCGAGCTCCTGAAC
back to top