mRNA_M-pyrifera_M_contig77971.18339.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig77971.18339.1
Unique NamemRNA_M-pyrifera_M_contig77971.18339.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig77971.18339.1 vs. uniprot
Match: D7G978_ECTSI (Actin-related protein 2/3 complex subunit 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G978_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 5.650e-30
Identity = 51/61 (83.61%), Postives = 56/61 (91.80%), Query Frame = 1 
Query:    1 SPLLAKGQEDIVEEALYYFRANVLYRNYHIDGSSDRTLIYLTFFIQQCLKELEKHPGKKEG 183
            +PL   G+EDIVEEALYYFRANVL+RNY I+GS+DRTLIYLTFFIQQCLKELEKHPGKKE 
Sbjct:   37 APLAQPGREDIVEEALYYFRANVLFRNYQIEGSADRTLIYLTFFIQQCLKELEKHPGKKEA 97
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BLAST of mRNA_M-pyrifera_M_contig77971.18339.1 vs. uniprot
Match: A0A835YQX6_9STRA (Actin-related protein 2/3 complex subunit 3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQX6_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 7.540e-18
Identity = 34/60 (56.67%), Postives = 51/60 (85.00%), Query Frame = 1 
Query:    1 SPLLAKG-QEDIVEEALYYFRANVLYRNYHIDGSSDRTLIYLTFFIQQCLKELEKHPGKK 177
            +P+L KG QEDI++E L+YFRAN+++RN+ ++ ++DRTLIYLTF+ QQCL+E+EK   K+
Sbjct:   32 APILPKGDQEDIIDETLFYFRANIMFRNFAVESNADRTLIYLTFYAQQCLREMEKTDDKQ 91
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BLAST of mRNA_M-pyrifera_M_contig77971.18339.1 vs. uniprot
Match: A0A8D8U665_9HEMI (Actin-related protein 2/3 complex subunit 3 n=2 Tax=Cacopsylla melanoneura TaxID=428564 RepID=A0A8D8U665_9HEMI)

HSP 1 Score: 77.8 bits (190), Expect = 1.450e-16
Identity = 31/61 (50.82%), Postives = 46/61 (75.41%), Query Frame = 1 
Query:    1 SPLLAKGQEDIVEEALYYFRANVLYRNYHIDGSSDRTLIYLTFFIQQCLKELEKHPGKKEG 183
            +P  + G++DI+EEALYYF+ANV +R Y I   +DR LIY+T ++ +CLK+L+K P K +G
Sbjct:   31 APQFSSGEQDIIEEALYYFKANVFFRTYEIKSEADRLLIYITLYVTECLKKLQKCPTKAQG 91
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BLAST of mRNA_M-pyrifera_M_contig77971.18339.1 vs. uniprot
Match: A0A1S3DIU2_DIACI (Actin-related protein 2/3 complex subunit 3 n=4 Tax=Psylloidea TaxID=33375 RepID=A0A1S3DIU2_DIACI)

HSP 1 Score: 77.4 bits (189), Expect = 2.650e-16
Identity = 32/61 (52.46%), Postives = 45/61 (73.77%), Query Frame = 1 
Query:    1 SPLLAKGQEDIVEEALYYFRANVLYRNYHIDGSSDRTLIYLTFFIQQCLKELEKHPGKKEG 183
            +P    G++DI+EEALYYF+ANV +R Y I   +DR LIY+T +I +CLK+L+K P K +G
Sbjct:   31 APQFTTGEQDIIEEALYYFKANVFFRTYEIKSEADRLLIYITLYITECLKKLQKCPTKAQG 91
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BLAST of mRNA_M-pyrifera_M_contig77971.18339.1 vs. uniprot
Match: A0A8J6CIQ6_DIALT (Actin-related protein 2/3 complex subunit 3 n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CIQ6_DIALT)

HSP 1 Score: 75.5 bits (184), Expect = 1.360e-15
Identity = 29/61 (47.54%), Postives = 46/61 (75.41%), Query Frame = 1 
Query:    1 SPLLAKGQEDIVEEALYYFRANVLYRNYHIDGSSDRTLIYLTFFIQQCLKELEKHPGKKEG 183
            +P L  G+EDI++E L++F+ANVL+RN+ + GS+DR L+YLT ++ +CLK +E  P K + 
Sbjct:   32 APSLTAGKEDIIDEVLFFFKANVLFRNFEVRGSADRLLVYLTLYVTECLKRVEAAPSKADA 92
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BLAST of mRNA_M-pyrifera_M_contig77971.18339.1 vs. uniprot
Match: UPI00193A35DD (actin-related protein 2/3 complex subunit 3-like n=1 Tax=Styela clava TaxID=7725 RepID=UPI00193A35DD)

HSP 1 Score: 75.5 bits (184), Expect = 1.510e-15
Identity = 28/55 (50.91%), Postives = 46/55 (83.64%), Query Frame = 1 
Query:   19 GQEDIVEEALYYFRANVLYRNYHIDGSSDRTLIYLTFFIQQCLKELEKHPGKKEG 183
             ++D+++EALY++RAN+ +RNY I G +DRTLIY+T ++QQCLK+L++   K++G
Sbjct:   39 SEQDVIDEALYFYRANIFFRNYDIKGDADRTLIYVTLYLQQCLKKLQRTTTKEQG 93
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BLAST of mRNA_M-pyrifera_M_contig77971.18339.1 vs. uniprot
Match: A0A0M3J4T9_ANISI (Actin-related protein 2/3 complex subunit 3 n=1 Tax=Anisakis simplex TaxID=6269 RepID=A0A0M3J4T9_ANISI)

HSP 1 Score: 74.7 bits (182), Expect = 2.060e-15
Identity = 30/58 (51.72%), Postives = 44/58 (75.86%), Query Frame = 1 
Query:   10 LAKGQEDIVEEALYYFRANVLYRNYHIDGSSDRTLIYLTFFIQQCLKELEKHPGKKEG 183
            ++   EDI++EAL YF+ N+ +R Y I G +DRTLIYLTF+I +CL++L+K P K +G
Sbjct:   15 ISDSGEDIIDEALAYFKPNIFFREYEIKGPADRTLIYLTFYISECLRKLQKSPNKTQG 72
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BLAST of mRNA_M-pyrifera_M_contig77971.18339.1 vs. uniprot
Match: A0A0M3J2E0_ANISI (Actin-related protein 2/3 complex subunit 3 n=1 Tax=Anisakis simplex TaxID=6269 RepID=A0A0M3J2E0_ANISI)

HSP 1 Score: 74.7 bits (182), Expect = 3.000e-15
Identity = 32/61 (52.46%), Postives = 46/61 (75.41%), Query Frame = 1 
Query:    1 SPLLAKGQEDIVEEALYYFRANVLYRNYHIDGSSDRTLIYLTFFIQQCLKELEKHPGKKEG 183
            +P +  G EDI++EAL YF+ N+ +R Y I G +DRTLIYLTF+I +CL++L+K P K +G
Sbjct:   31 APRINSG-EDIIDEALAYFKPNIFFREYEIKGPADRTLIYLTFYISECLRKLQKSPNKTQG 90
[Close]
BLAST of mRNA_M-pyrifera_M_contig77971.18339.1 vs. uniprot
Match: A0A7R8XH24_9CRUS (Actin-related protein 2/3 complex subunit 3 n=1 Tax=Darwinula stevensoni TaxID=69355 RepID=A0A7R8XH24_9CRUS)

HSP 1 Score: 74.7 bits (182), Expect = 3.070e-15
Identity = 33/55 (60.00%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:   19 GQEDIVEEALYYFRANVLYRNYHIDGSSDRTLIYLTFFIQQCLKELEKHPGKKEG 183
             + DIVEEALYYF+ANV +R Y I   +DR LIYLT +I +CLKEL+K P K  G
Sbjct:   39 NEMDIVEEALYYFKANVFFRTYEIKSEADRLLIYLTLYISECLKELQKCPDKNSG 93
[Close]
BLAST of mRNA_M-pyrifera_M_contig77971.18339.1 vs. uniprot
Match: A0A6S7KA98_PARCT (Actin-related 2 3 complex subunit 3 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7KA98_PARCT)

HSP 1 Score: 74.7 bits (182), Expect = 3.320e-15
Identity = 29/58 (50.00%), Postives = 44/58 (75.86%), Query Frame = 1 
Query:   10 LAKGQEDIVEEALYYFRANVLYRNYHIDGSSDRTLIYLTFFIQQCLKELEKHPGKKEG 183
            +  G  DI+EEA+YYF+AN+ ++NY I G +DR LIYLT +I +CLK+L++   K++G
Sbjct:   36 MCDGSTDIIEEAIYYFKANIFFKNYEIKGDADRVLIYLTLYITECLKKLQRCQSKEQG 93
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig77971.18339.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G978_ECTSI5.650e-3083.61Actin-related protein 2/3 complex subunit 3 n=1 Ta... [more]
A0A835YQX6_9STRA7.540e-1856.67Actin-related protein 2/3 complex subunit 3 n=1 Ta... [more]
A0A8D8U665_9HEMI1.450e-1650.82Actin-related protein 2/3 complex subunit 3 n=2 Ta... [more]
A0A1S3DIU2_DIACI2.650e-1652.46Actin-related protein 2/3 complex subunit 3 n=4 Ta... [more]
A0A8J6CIQ6_DIALT1.360e-1547.54Actin-related protein 2/3 complex subunit 3 n=1 Ta... [more]
UPI00193A35DD1.510e-1550.91actin-related protein 2/3 complex subunit 3-like n... [more]
A0A0M3J4T9_ANISI2.060e-1551.72Actin-related protein 2/3 complex subunit 3 n=1 Ta... [more]
A0A0M3J2E0_ANISI3.000e-1552.46Actin-related protein 2/3 complex subunit 3 n=1 Ta... [more]
A0A7R8XH24_9CRUS3.070e-1560.00Actin-related protein 2/3 complex subunit 3 n=1 Ta... [more]
A0A6S7KA98_PARCT3.320e-1550.00Actin-related 2 3 complex subunit 3 n=1 Tax=Paramu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig77971contigM-pyrifera_M_contig77971:447..629 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.1
Seed ortholog evalue9.4e-23
Seed eggNOG ortholog2880.D7G978
Preferred nameARPC3
KEGG rclassRC00002,RC00017
KEGG koko:K05756,ko:K07541,ko:K09680
KEGG ReactionR02971,R03018,R04391,R05919
KEGG Pathwayko00563,ko00770,ko01100,ko04144,ko04666,ko04810,ko05100,ko05130,ko05131,ko05132,map00563,map00770,map01100,map04144,map04666,map04810,map05100,map05130,map05131,map05132
KEGG ModuleM00120
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005198,GO:0005200,GO:0005575,GO:0005622,GO:0005623,GO:0005856,GO:0005884,GO:0005885,GO:0006996,GO:0007010,GO:0007015,GO:0008064,GO:0008150,GO:0009987,GO:0010638,GO:0015629,GO:0016043,GO:0030027,GO:0030029,GO:0030036,GO:0030424,GO:0030426,GO:0030427,GO:0030832,GO:0030833,GO:0030838,GO:0031252,GO:0031334,GO:0031941,GO:0032271,GO:0032273,GO:0032535,GO:0032956,GO:0032970,GO:0032991,GO:0033043,GO:0033267,GO:0034314,GO:0042995,GO:0043005,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043254,GO:0044087,GO:0044089,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044463,GO:0044464,GO:0045010,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051493,GO:0051495,GO:0061850,GO:0065007,GO:0065008,GO:0071840,GO:0090066,GO:0090723,GO:0090725,GO:0097435,GO:0097458,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0110053,GO:0120025,GO:0120038,GO:0150034,GO:1902903,GO:1902905
EggNOG free text desc.Arp2/3 complex-mediated actin nucleation
EggNOG OGsKOG3155@1,KOG3155@2759
Ec32 ortholog descriptionActin-related protein 2/3 complex subunit 3
Ec32 orthologEc-13_002920.1
EC2.7.1.33
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04131,ko04812
Exons1
Model size183
Cds size183
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816681.1800616-CDS-M-pyrifera_M_contig77971:446..6291622816681.1800616-CDS-M-pyrifera_M_contig77971:446..629Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77971 447..629 +
1692278116.3104858-CDS-M-pyrifera_M_contig77971:446..6291692278116.3104858-CDS-M-pyrifera_M_contig77971:446..629Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77971 447..629 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig77971.18339.1prot_M-pyrifera_M_contig77971.18339.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig77971 447..629 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig77971.18339.1

>prot_M-pyrifera_M_contig77971.18339.1 ID=prot_M-pyrifera_M_contig77971.18339.1|Name=mRNA_M-pyrifera_M_contig77971.18339.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=61bp
SPLLAKGQEDIVEEALYYFRANVLYRNYHIDGSSDRTLIYLTFFIQQCLK
ELEKHPGKKEG
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mRNA from alignment at M-pyrifera_M_contig77971:447..629+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig77971.18339.1 ID=mRNA_M-pyrifera_M_contig77971.18339.1|Name=mRNA_M-pyrifera_M_contig77971.18339.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=183bp|location=Sequence derived from alignment at M-pyrifera_M_contig77971:447..629+ (Macrocystis pyrifera P11B4 male)
TCCCCCCTTCTCGCAAAAGGTCAAGAGGACATCGTCGAGGAGGCGCTGTA
CTACTTCCGCGCGAACGTTCTTTACCGGAACTACCATATAGATGGATCCT
CCGACCGCACCCTGATCTACCTCACCTTCTTCATACAGCAGTGCCTCAAG
GAGCTCGAGAAGCACCCTGGCAAAAAAGAGGGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig77971:447..629+

>mRNA_M-pyrifera_M_contig77971.18339.1 ID=mRNA_M-pyrifera_M_contig77971.18339.1|Name=mRNA_M-pyrifera_M_contig77971.18339.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=366bp|location=Sequence derived from alignment at M-pyrifera_M_contig77971:447..629+ (Macrocystis pyrifera P11B4 male)
TCCCCCCTTCTCGCAAAAGGTCAAGAGGACATCGTCGAGGAGGCGCTGTA
CTACTTCCGCGCGAACGTTCTTTACCGGAACTACCATATAGATGGATCCT
CCGACCGCACCCTGATCTACCTCACCTTCTTCATACAGCAGTGCCTCAAG
GAGCTCGAGAAGCACCCTGGCAAAAAAGAGGGTTCCCCCCTTCTCGCAAA
AGGTCAAGAGGACATCGTCGAGGAGGCGCTGTACTACTTCCGCGCGAACG
TTCTTTACCGGAACTACCATATAGATGGATCCTCCGACCGCACCCTGATC
TACCTCACCTTCTTCATACAGCAGTGCCTCAAGGAGCTCGAGAAGCACCC
TGGCAAAAAAGAGGGT
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