mRNA_M-pyrifera_M_contig77942.18337.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig77942.18337.1
Unique NamemRNA_M-pyrifera_M_contig77942.18337.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig77942.18337.1 vs. uniprot
Match: M5FWI2_DACPD (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Dacryopinax primogenitus (strain DJM 731) TaxID=1858805 RepID=M5FWI2_DACPD)

HSP 1 Score: 50.8 bits (120), Expect = 1.970e-5
Identity = 21/43 (48.84%), Postives = 27/43 (62.79%), Query Frame = 1 
Query:    1 PLLPRTLSCAACARSKRKCDGGQPCDRCERLGKGLECVYPIDR 129
            PL   +++CA C + K +C GGQPC RCE+LG   EC  P  R
Sbjct:   22 PLARTSVACARCRQQKLRCSGGQPCQRCEKLGFARECHLPPPR 64
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig77942.18337.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
M5FWI2_DACPD1.970e-548.84Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig77942contigM-pyrifera_M_contig77942:2..244 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size243
Cds size243
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816681.0168307-CDS-M-pyrifera_M_contig77942:1..2441622816681.0168307-CDS-M-pyrifera_M_contig77942:1..244Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77942 2..244 +
1692278116.1839044-CDS-M-pyrifera_M_contig77942:1..2441692278116.1839044-CDS-M-pyrifera_M_contig77942:1..244Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77942 2..244 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig77942.18337.1prot_M-pyrifera_M_contig77942.18337.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig77942 2..244 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig77942.18337.1

>prot_M-pyrifera_M_contig77942.18337.1 ID=prot_M-pyrifera_M_contig77942.18337.1|Name=mRNA_M-pyrifera_M_contig77942.18337.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=81bp
PLLPRTLSCAACARSKRKCDGGQPCDRCERLGKGLECVYPIDRRRLRLPE
RSEKVMKRLLHAESLLSGSFPSSDPSSSSQH
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mRNA from alignment at M-pyrifera_M_contig77942:2..244+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig77942.18337.1 ID=mRNA_M-pyrifera_M_contig77942.18337.1|Name=mRNA_M-pyrifera_M_contig77942.18337.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=243bp|location=Sequence derived from alignment at M-pyrifera_M_contig77942:2..244+ (Macrocystis pyrifera P11B4 male)
CCATTATTGCCACGAACTCTTTCTTGTGCTGCTTGTGCGCGTTCTAAGAG
GAAATGTGACGGAGGTCAACCTTGTGACCGTTGTGAGCGACTTGGTAAGG
GATTGGAATGTGTTTATCCTATTGATCGACGACGTTTACGACTGCCTGAG
CGTTCAGAGAAAGTGATGAAACGTTTACTCCATGCTGAGAGCTTACTTTC
TGGATCTTTTCCCTCCTCTGACCCCTCTAGTTCTTCACAACAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig77942:2..244+

>mRNA_M-pyrifera_M_contig77942.18337.1 ID=mRNA_M-pyrifera_M_contig77942.18337.1|Name=mRNA_M-pyrifera_M_contig77942.18337.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=486bp|location=Sequence derived from alignment at M-pyrifera_M_contig77942:2..244+ (Macrocystis pyrifera P11B4 male)
CCATTATTGCCACGAACTCTTTCTTGTGCTGCTTGTGCGCGTTCTAAGAG
GAAATGTGACGGAGGTCAACCTTGTGACCGTTGTGAGCGACTTGGTAAGG
GATTGGAATGTGTTTATCCTATTGATCGACGACGTTTACGACTGCCTGAG
CGTTCAGAGAAAGTGATGAAACGTTTACTCCATGCTGAGAGCTTACTTTC
TGGATCTTTTCCCTCCTCTGACCCCTCTAGTTCTTCACAACATCCATTAT
TGCCACGAACTCTTTCTTGTGCTGCTTGTGCGCGTTCTAAGAGGAAATGT
GACGGAGGTCAACCTTGTGACCGTTGTGAGCGACTTGGTAAGGGATTGGA
ATGTGTTTATCCTATTGATCGACGACGTTTACGACTGCCTGAGCGTTCAG
AGAAAGTGATGAAACGTTTACTCCATGCTGAGAGCTTACTTTCTGGATCT
TTTCCCTCCTCTGACCCCTCTAGTTCTTCACAACAT
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