mRNA_M-pyrifera_M_contig7794.18334.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7794.18334.1
Unique NamemRNA_M-pyrifera_M_contig7794.18334.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig7794.18334.1 vs. uniprot
Match: A0A6H5KYX0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYX0_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 3.470e-29
Identity = 85/202 (42.08%), Postives = 105/202 (51.98%), Query Frame = 1 
Query:   55 SLALKSPLRRSIAEFSEGVRAMGGEMYPSPYDSDDDSTSRAIDNLNASISGPVARASADAAAPAGAGDPQNMSFTINTRQMHGLEDSDSSMELTGNFTFNPQPMSARAVAGGTAAAATAFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSSELAYTLCGSSIRDAVSPGS--RRVSSGSLLDVMDEV 654
            SLA+KSP+R+SI  +SE VRAMGG   PSPYDSD D  +R ++NLNAS+ GP A A+   A+ A   +PQN SF+IN  Q+H L DSDSS+ELTG FT          +A      A                                              DSSEL  TL G+SIRDA SP    +R+SSGSLL V+D+V
Sbjct: 1198 SLAIKSPVRKSIMAYSEDVRAMGGGGPPSPYDSDFDPAARRVENLNASLLGPAASAAKRGASAASYEEPQNRSFSINNSQLHRLNDSDSSLELTGTFTTGEDIRVTPVMAAAVPRDAAVAGADGGAAVGTGGTGDLSRPTAGGAGDAERSGGDADVDDSMELNDSSELESTLHGASIRDAASPAPDPKRLSSGSLLSVVDDV 1399
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BLAST of mRNA_M-pyrifera_M_contig7794.18334.1 vs. uniprot
Match: D7FTI1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTI1_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 3.950e-22
Identity = 91/190 (47.89%), Postives = 111/190 (58.42%), Query Frame = 1 
Query:   97 FSEGVRAMGGEMYPSPYDSDDDSTSRAIDNLNASISGPVARASADAAAPAGAGDPQNMSFTINTRQMHGLEDSDSSMELTGNFTFNPQPMSARAVAGGTAAAATAFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--DSSELAYTLCGSSIRDAVSPGS--RRVSSGSLLDVMDEV 654
            +SE VRAMGG   PSPYDSD D  +R ++NLNAS+ GP A A    A+ A   +PQN SF+IN  Q+H L DSDSS+ELTG FT + +     A+A   +A     XXXXXXXXXXXXXXX                              +SSEL  TL G+SIRDA SP    +R+SSGSLL V+D+V
Sbjct:    3 YSEDVRAMGGGGPPSPYDSDFDPAARRVENLNASLLGPAASAVKRGASAASYEEPQNRSFSINNSQLHRLNDSDSSLELTGTFTTSEEVRITPAMAAAVSAPRDXXXXXXXXXXXXXXXXXGDLSRPAAGGAGEAEPSVGDADVDDSMDLNESSELESTLHGASIRDAASPAPDPKRLSSGSLLSVVDDV 192
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7794.18334.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KYX0_9PHAE3.470e-2942.08Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7FTI1_ECTSI3.950e-2247.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7794contigM-pyrifera_M_contig7794:1266..5604 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-21_001450.1
Exons4
Model size654
Cds size654
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7794.18334.1prot_M-pyrifera_M_contig7794.18334.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7794 1266..5604 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816680.8196516-CDS-M-pyrifera_M_contig7794:1265..13921622816680.8196516-CDS-M-pyrifera_M_contig7794:1265..1392Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7794 1266..1392 -
1692278116.0565486-CDS-M-pyrifera_M_contig7794:1265..13921692278116.0565486-CDS-M-pyrifera_M_contig7794:1265..1392Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7794 1266..1392 -
1622816680.8310862-CDS-M-pyrifera_M_contig7794:2190..24381622816680.8310862-CDS-M-pyrifera_M_contig7794:2190..2438Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7794 2191..2438 -
1692278116.0662062-CDS-M-pyrifera_M_contig7794:2190..24381692278116.0662062-CDS-M-pyrifera_M_contig7794:2190..2438Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7794 2191..2438 -
1622816680.8495293-CDS-M-pyrifera_M_contig7794:4436..46211622816680.8495293-CDS-M-pyrifera_M_contig7794:4436..4621Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7794 4437..4621 -
1692278116.07491-CDS-M-pyrifera_M_contig7794:4436..46211692278116.07491-CDS-M-pyrifera_M_contig7794:4436..4621Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7794 4437..4621 -
1622816680.8616517-CDS-M-pyrifera_M_contig7794:5510..56041622816680.8616517-CDS-M-pyrifera_M_contig7794:5510..5604Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7794 5511..5604 -
1692278116.083279-CDS-M-pyrifera_M_contig7794:5510..56041692278116.083279-CDS-M-pyrifera_M_contig7794:5510..5604Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7794 5511..5604 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7794.18334.1

>prot_M-pyrifera_M_contig7794.18334.1 ID=prot_M-pyrifera_M_contig7794.18334.1|Name=mRNA_M-pyrifera_M_contig7794.18334.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=218bp
MSCGLVDRSSPSRNRRRDSLALKSPLRRSIAEFSEGVRAMGGEMYPSPYD
SDDDSTSRAIDNLNASISGPVARASADAAAPAGAGDPQNMSFTINTRQMH
GLEDSDSSMELTGNFTFNPQPMSARAVAGGTAAAATAFGGGSPTSLPMPA
AGSETRDEVDARGDGRGDGNDKDGDSRVDLNDSSELAYTLCGSSIRDAVS
PGSRRVSSGSLLDVMDEV
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mRNA from alignment at M-pyrifera_M_contig7794:1266..5604-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7794.18334.1 ID=mRNA_M-pyrifera_M_contig7794.18334.1|Name=mRNA_M-pyrifera_M_contig7794.18334.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=4339bp|location=Sequence derived from alignment at M-pyrifera_M_contig7794:1266..5604- (Macrocystis pyrifera P11B4 male)
ATGTCCTGCGGTCTTGTCGACCGGAGCAGCCCTTCGCGCAACCGCCGCCG
CGACAGCCTCGCCCTCAAGAGCCCTCTCCGGCGGAGCATCGCAGGTGATT
CACGATTTGGGGGTCCCGGTTACTTGTGTCGCGACCGAAAAAACGAGAAG
AAGTTCGGTATTATCGTATCTGCAGTCCAGGAAGGGGGGGGGGGCAGCAT
AAGCATCATGAATCTGCGCGCATGACGTCTGTATATATCTCTCCGAATGT
TGCACGTCGTGTGCATTGCCTGCATTCGTCGGCAGCCCGGGCTGCTTGGT
ATGGCTGATAGATACTGTGATCGTCGTTTCTTTTCGATTGTGAATACTTT
TCCCTCTGAAGTCCACCAAGCTGTCAGCCCAACCCTTCTATGTTATCCCC
AAGGGTAGTACCTGGTAGGTATATATACATCAAGGTTGTCCAACTCTTAT
GTACAAGCAGTGTGTCCCAGAAATATGCCTCTTTTCCTCGGGCAGACCTT
GTGTACTGGTGATTACGCCCTGGACAATGGATCACAGCTTTTCCTCGGGC
ATAGCTTGTGTACTGGTGATTACACCCTGGACAATAGACAATAGACAGTA
GTCTATTGTTTATTTATAGATTCCTATTGCAATGGTGTAGACTGCATATT
GTGGCCTATGTTTCCTTTTACTAGGCAGCCTGCTTCATCAATTGTAAACA
CAATAGCTCGTTGGAATATAATTTTTCCAGGTTATATCACACGCTTGACA
TTTGAAATAGCAGTGGGGGCTACTCGCAATACATCCAAACGATGGAGATT
TTCATCATCATGTGCCGAGCGAGACGATCTCTCGCTATTTGTTTTTGTGT
TGCTTGTGTGCCATGTTTCTCGCTGTACACTTTACCCTACCGCTGCCCTC
CCCTCCCCTCCTATCCCCCGTTTGCCCCGCTCCCTCGACTCCGTGACCCT
CGACCCCGTGATTGTTTTGTTGTTTTTTGTCAGAGTTCTCCGAAGGCGTT
CGTGCCATGGGGGGGGAGATGTACCCATCCCCCTACGACTCAGACGACGA
CTCGACCTCCCGTGCTATCGACAACCTCAACGCGAGTATTTCGGGCCCGG
TGGCGAGGGCTAGCGCTGATGCTGCTGCGCCTGCTGGAGCAGGCGATCCC
CAGAACATGTCCTTCACCGTGAGTGCGCTTTTTTGTGTCAAAGGTTTCTA
GTTGAAGCATGAGCGTGTTGAGGGACGGGGTGCCTAAGATCTATCTTTGT
CCGTAACTGCGCCATATGTTTTAGTTGTGGGAGATTTCTACAATAGCGAT
TGGATTGGCTTTTCGGGGCAGGGGATGCCCAGAACCTGTTCTTCTCCGTG
AATGCGCCATCTTTTTTGTGTCGAGGGTTTCCCGGGTTTGATTCATGGAC
TTGGTGCTTGTTGCGGCCAGCATGGTGGGTGGTACTTGCGGTACAATCGT
TTTTTTGGTGCTACGTACCCGGTCGAGTTTTTTTGTGTTTTTTTCTGCTC
TGGGGCAAAATTTGAAAGTTTGTTGCTTTGCTGCAGGGTATGGGTGGGGT
TCCTGCTCTGCTGGTTGGATTTGCTTTCGTACGTACGCTATTTTGTCTAC
TGTTCGTAGAGGTCCAGGGGAGCACGCGGATGTAATTCCAGACACCTCAC
TACCCTTTTCGAGACCCAGGCAGGGGGGTGTATACTAAAAACAAGTAAAG
ACGAAACAAACACCAAACTCGTTTTTTTCGAACAGAAATCCCACAGTCTT
TTTTTTGTCATTTTCTCTTTTTTTTGTTTTTGTGTTTTCTTGAGTAGTGC
ACGGTACAAGACACCTATCAATAGTAGAAAACCAGCAATAAGAAAGACAC
GCTGAGATATGCAGGGAAACAAGAAACTCGGGCGCCATTTATAACTGAAT
TTTGGTGTAGGATGCACCCGTTATTCAGTAGGAAAAAATCCAGCCCGGGC
CGGCTTTCCTGTTTCTCGTTTTTTTCAGTAGATGTCCGGTACTGCTGTGG
TGCTGTAGGTAGCCCCTCTTCACCCTTTCGGTACCGGAGTCCCGTTTTGA
GGACACTGCAGTGCCTACCAAACTAGAATCTGGGTGGTTTGTTCCCAAAA
TCGGACTGCAGTTTGCCCTTAAGGTTGAGGGGTCCTATTACGGTGGGCCG
TAGTAATAGGACCCATCATATACACAAAAACCTATACATTCCAGTATTTT
TACTGCGCATATTTGGTCCTGTTTACTATGGTACGTTCACTCGTAATAGT
GTTGCTGGGGTTGAAGGCATCTCGTATAGGTGCCAGCGTCCCTTACTAGA
GTAGTCAGCAACAGTGTGAAAAAAAAAAACAGCGCGCGTGAATTTTGAGG
TCCCTTGTCCTGATATACCTGTTTTGTTTTTTGTTTTTGTTTTTCTTCTC
GCGGCGAGTCCCTTGAAGGAGGTTAATTTACCCTCCTGGGACTTAGTTCC
GAAAAGAAAATCGACGAGTGCAACAAAATGCCATTGCGCGATCGGCGGAA
AATTACAGATCGATGTCGGAGTTGCAATGGTTGATGCGAGGAGGTACGCA
CGCCACGGGCGCAGGCAGCATGACCCTTTGCCGCTGCTGCTCGCCTCTCA
CGCTGCTCGAAGCAAGTTGGAAAAAAAACAAATGTATCCATGTTTTGGGC
GCTCGTAGAAGGTTAAAAGGGGGTACCTAATAGTGATGTACTGTAGTAGA
AGCCCCCATCGGCCAAGAGGTTTGGGGGGGCTCGTGATGGGGGGTTAGGG
AGCAGGAGAGACGCCCCTTTCTACTCTCTAGCGCAACGCGAAACATGAGT
CGTGGTTCGTTGAGCGCAGCGCGCAGCGCGCAGGAGTAGTCGGTCAACGC
ACTGTAGTTCTGTCTGTCACTACGTGCATGGTATACGTTTACTTATGTGC
GGTAATGATCGCTGCTTTTGTTTGCGCCTCGTTGTCGTTTTTTTTTGTGT
TTTGTTTAGCAAATTCCCGTTTTTACCCTGTTTACACCATACAAATACGT
ATAATACGTACGGAACCTTCTGCGATATACCAGGTACGGGTGTGTGCTTT
TTCTGTTTTGTTTTTTTTTAATATATTTCGCTGGTGTATCCTTGCTCGTC
CTGATCAGCCTCCCTCTATACGACTCAACAACATGAAAATTTTTGTCCCG
CCCGCGCGTCATTCAGATCAACACCCGCCAGATGCACGGATTGGAGGACT
CTGATTCGTCCATGGAGCTCACCGGAAACTTCACCTTTAACCCTCAGCCA
ATGAGCGCTCGCGCTGTCGCCGGCGGGACTGCTGCCGCCGCGACTGCTTT
TGGCGGCGGCAGCCCAACTTCTCTGCCGATGCCCGCGGCTGGTTCTGAAA
CCCGTGACGAGGTAGATGCAAGGGGGGATGGTCGAGGAGATGGAAACGAC
AAGGATGGCGACAGGTGATTGTAATTTGCGTTGAGTGGGAGTTGCGGGTG
GCGTTTTGTTTGCTGGGTTTGGGCCATGTGCCAGCGTGTCGGGTGCATAT
CGAAACTTAGAATATTACGTTTTTAGAATGAACTGCGCCCACGTTTGTCC
TGAGAAATTGTATGGAATAGGGGTGGGAGTGGGAGTGTGGTAGAAGGTAA
AGGTTGTTGAGGACCATACTTTGATGTTTCTGCAACAGCACACTACTTAT
CTGGGTCTGCTTTTTGTTGTTGTCGGAACAATAGCGCTTAACCTTTGCGC
TGCTTGTGCTGCGAAAACGATCCGGTTAAAATTCGTAGTGCCACGCTGCT
TCCACAGTTGAGTATCAATCACTCAATCGGTCGAACTCACAGCTGACGTA
TTTGGTATTATTTTTATTTTTATAAAAAATAGCAATATGTTGGCCCTTAA
CGGTGATTGGAGTTGCATGTCAGGTTCCTGGTATACAGTAGTAGCGATAT
TATTATTACGGGGGTCCATAGTAACTAGGACCAAATATTCTTAGTAAAAA
TAGATAAATATATCGGTTTTTGTGTGTACCGTAGGTCCTATTAACTATGG
ACCCCCGTAATAGCTGTTTCGGGTACCGGACACAAACTAGTTGCCTTTTA
AGTCAAATCGTTTTTGCGGTTGTGCAAAGGTTGGGTACTGGCCTTTCCCC
TCCGCAGCACGTTTCCCGTTTATTTCGCGCTCTTTCTCCAACTCTGTTGT
TTTCGTTTTTGTTTGTTTTTTGTTCATCTATATGTATGATACCCGCCGTT
CTTGTAACCTAGCCGGGTGGATCTGAACGACTCCAGTGAGCTGGCGTACA
CGCTCTGCGGCTCGTCCATCCGAGACGCGGTTTCCCCCGGCTCGAGGCGT
GTCTCATCAGGGTCTCTCCTCGACGTCATGGACGAGGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7794:1266..5604-

>mRNA_M-pyrifera_M_contig7794.18334.1 ID=mRNA_M-pyrifera_M_contig7794.18334.1|Name=mRNA_M-pyrifera_M_contig7794.18334.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1308bp|location=Sequence derived from alignment at M-pyrifera_M_contig7794:1266..5604- (Macrocystis pyrifera P11B4 male)
ATGTCCTGCGGTCTTGTCGACCGGAGCAGCCCTTCGCGCAACCGCCGCCG
CGACAGCCTCGCCCTCAAGAGCCCTCTCCGGCGGAGCATCGCAGATGTCC
TGCGGTCTTGTCGACCGGAGCAGCCCTTCGCGCAACCGCCGCCGCGACAG
CCTCGCCCTCAAGAGCCCTCTCCGGCGGAGCATCGCAGAGTTCTCCGAAG
GCGTTCGTGCCATGGGGGGGGAGATGTACCCATCCCCCTACGACTCAGAC
GACGACTCGACCTCCCGTGCTATCGACAACCTCAACGCGAGTATTTCGGG
CCCGGTGGCGAGGGCTAGCGCTGATGCTGCTGCGCCTGCTGGAGCAGGCG
ATCCCCAGAACATGTCCTTCACCAGTTCTCCGAAGGCGTTCGTGCCATGG
GGGGGGAGATGTACCCATCCCCCTACGACTCAGACGACGACTCGACCTCC
CGTGCTATCGACAACCTCAACGCGAGTATTTCGGGCCCGGTGGCGAGGGC
TAGCGCTGATGCTGCTGCGCCTGCTGGAGCAGGCGATCCCCAGAACATGT
CCTTCACCATCAACACCCGCCAGATGCACGGATTGGAGGACTCTGATTCG
TCCATGGAGCTCACCGGAAACTTCACCTTTAACCCTCAGCCAATGAGCGC
TCGCGCTGTCGCCGGCGGGACTGCTGCCGCCGCGACTGCTTTTGGCGGCG
GCAGCCCAACTTCTCTGCCGATGCCCGCGGCTGGTTCTGAAACCCGTGAC
GAGGTAGATGCAAGGGGGGATGGTCGAGGAGATGGAAACGACAAGGATGG
CGACAGATCAACACCCGCCAGATGCACGGATTGGAGGACTCTGATTCGTC
CATGGAGCTCACCGGAAACTTCACCTTTAACCCTCAGCCAATGAGCGCTC
GCGCTGTCGCCGGCGGGACTGCTGCCGCCGCGACTGCTTTTGGCGGCGGC
AGCCCAACTTCTCTGCCGATGCCCGCGGCTGGTTCTGAAACCCGTGACGA
GGTAGATGCAAGGGGGGATGGTCGAGGAGATGGAAACGACAAGGATGGCG
ACAGCCGGGTGGATCTGAACGACTCCAGTGAGCTGGCGTACACGCTCTGC
GGCTCGTCCATCCGAGACGCGGTTTCCCCCGGCTCGAGGCGTGTCTCATC
AGGGTCTCTCCTCGACGTCATGGACGAGGTGCCGGGTGGATCTGAACGAC
TCCAGTGAGCTGGCGTACACGCTCTGCGGCTCGTCCATCCGAGACGCGGT
TTCCCCCGGCTCGAGGCGTGTCTCATCAGGGTCTCTCCTCGACGTCATGG
ACGAGGTG
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