mRNA_M-pyrifera_M_contig77935.18333.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig77935.18333.1
Unique NamemRNA_M-pyrifera_M_contig77935.18333.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig77935.18333.1 vs. uniprot
Match: A0A7S0PH13_CAFRO (Hypothetical protein (Fragment) n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0PH13_CAFRO)

HSP 1 Score: 92.4 bits (228), Expect = 5.230e-19
Identity = 56/113 (49.56%), Postives = 68/113 (60.18%), Query Frame = 1 
Query:  130 LSGIPSELYPDSF---------ASHLGPGDILLFETSSAGAAIQRAVTLSAFDHVAILVRPPPDAVKLVSCEPDEPWMLEVTGEGVGCYPIRNRLRLYGRTGLARRVVARRFL 441
            L  +P  L  DSF         + +LGPGDILLF T+S  AA+QR  T S FDH+ I+V  P  A   VS +P   W LEVTG+  GCYP+ NRL  Y  +GLA RVVARR +
Sbjct:  256 LPALPRALGGDSFRRRVGRLFLSEYLGPGDILLFRTTSTAAALQRFGTRSPFDHIGIVVPAPTCAAAAVSSQPCL-WYLEVTGDATGCYPLLNRLDAYDWSGLAPRVVARRVI 367
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BLAST of mRNA_M-pyrifera_M_contig77935.18333.1 vs. uniprot
Match: A0A7S2SLV3_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SLV3_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 2.160e-9
Identity = 39/87 (44.83%), Postives = 52/87 (59.77%), Query Frame = 1 
Query:  184 PGDILLFETSSAGAAIQRAVTLSAFDHVAILVRPPPDAVKLVSCEPDEPW--MLEVTGEGVGCYPIRNRLRLYGRTGLARRVVARRF 438
            PGDILLF+ +   AA+QR +T S +DHVAI+V+            P  P+  +LE TG+GV CYP+  RLR YG+ G A  +  RR 
Sbjct:  310 PGDILLFKCTHTVAALQRKITKSTWDHVAIIVK-----------RPSMPYHELLEATGDGVECYPLIERLRAYGQ-GFASDIALRRL 384
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BLAST of mRNA_M-pyrifera_M_contig77935.18333.1 vs. uniprot
Match: A0A7S1CQR3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CQR3_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 5.740e-5
Identity = 37/120 (30.83%), Postives = 58/120 (48.33%), Query Frame = 1 
Query:    4 QRAKLDRFMQCLCARGAAASDPRVLSWLGAIRGLKPREPAAALSGIPSELYPDSFASHLGPGDILLFETSSAGAAIQRAVTLSAFDHVAILVRPPPDAVKLVSCEPDEPWMLEVTGEGVG 363
            +R KLDR++Q L +    A+   ++SW+G +   +      A       L+       + PGD+LLF  ++  + +QR VT S +DH+AI+ +       LV          E TGEGVG
Sbjct:  112 RRQKLDRYLQGLLSVPEVAASVPLMSWMGVLSTARHERSDDARK----LLHVTRLQEFVQPGDVLLFACNNVLSGLQRTVTRSEWDHIAIVCKQHGSVFSLV----------EATGEGVG 217
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig77935.18333.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7S0PH13_CAFRO5.230e-1949.56Hypothetical protein (Fragment) n=1 Tax=Cafeteria ... [more]
A0A7S2SLV3_9STRA2.160e-944.83Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A7S1CQR3_9STRA5.740e-530.83Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig77935contigM-pyrifera_M_contig77935:35..496 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.6
Seed ortholog evalue1.1e-08
Seed eggNOG ortholog157072.XP_008861714.1
Preferred nameNISCH
Hectar predicted targeting categoryother localisation
GOsGO:0003008,GO:0003013,GO:0003674,GO:0005102,GO:0005178,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0005829,GO:0005886,GO:0005975,GO:0005996,GO:0006006,GO:0006810,GO:0006996,GO:0007010,GO:0007154,GO:0007165,GO:0007264,GO:0007265,GO:0008015,GO:0008150,GO:0008152,GO:0008217,GO:0009987,GO:0010646,GO:0012505,GO:0015844,GO:0015850,GO:0015874,GO:0016020,GO:0016043,GO:0016601,GO:0019318,GO:0023051,GO:0023052,GO:0030029,GO:0030036,GO:0030334,GO:0030336,GO:0031410,GO:0031982,GO:0032228,GO:0032501,GO:0032879,GO:0032940,GO:0035556,GO:0040012,GO:0040013,GO:0042802,GO:0043226,GO:0043227,GO:0043229,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0046903,GO:0048243,GO:0048519,GO:0048523,GO:0050432,GO:0050789,GO:0050794,GO:0050804,GO:0050839,GO:0050896,GO:0051179,GO:0051234,GO:0051270,GO:0051271,GO:0051716,GO:0051937,GO:0055037,GO:0065007,GO:0065008,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0097708,GO:0099177,GO:2000145,GO:2000146
EggNOG free text desc.norepinephrine secretion
EggNOG OGsKOG1259@2759,KOG1859@1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size462
Cds size435
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816680.7772925-CDS-M-pyrifera_M_contig77935:34..4691622816680.7772925-CDS-M-pyrifera_M_contig77935:34..469Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77935 35..469 -
1692278116.0277314-CDS-M-pyrifera_M_contig77935:34..4691692278116.0277314-CDS-M-pyrifera_M_contig77935:34..469Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77935 35..469 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816680.7880373-UTR-M-pyrifera_M_contig77935:469..4961622816680.7880373-UTR-M-pyrifera_M_contig77935:469..496Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig77935 470..496 -
1692278116.042117-UTR-M-pyrifera_M_contig77935:469..4961692278116.042117-UTR-M-pyrifera_M_contig77935:469..496Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig77935 470..496 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig77935.18333.1prot_M-pyrifera_M_contig77935.18333.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig77935 35..469 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig77935.18333.1

>prot_M-pyrifera_M_contig77935.18333.1 ID=prot_M-pyrifera_M_contig77935.18333.1|Name=mRNA_M-pyrifera_M_contig77935.18333.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=145bp
MQCLCARGAAASDPRVLSWLGAIRGLKPREPAAALSGIPSELYPDSFASH
LGPGDILLFETSSAGAAIQRAVTLSAFDHVAILVRPPPDAVKLVSCEPDE
PWMLEVTGEGVGCYPIRNRLRLYGRTGLARRVVARRFLKPLQPTS
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mRNA from alignment at M-pyrifera_M_contig77935:35..496-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig77935.18333.1 ID=mRNA_M-pyrifera_M_contig77935.18333.1|Name=mRNA_M-pyrifera_M_contig77935.18333.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=462bp|location=Sequence derived from alignment at M-pyrifera_M_contig77935:35..496- (Macrocystis pyrifera P11B4 male)
CGACAACGTGCAAAGTTGGATCGATTTATGCAGTGTTTGTGTGCTCGAGG
TGCTGCAGCGTCAGATCCACGTGTCCTTTCTTGGCTTGGAGCGATTCGAG
GATTGAAGCCCCGTGAACCAGCTGCAGCACTCTCCGGAATTCCATCAGAA
TTATACCCAGATTCTTTTGCATCGCACTTGGGACCTGGTGACATACTATT
GTTTGAAACATCTTCAGCAGGTGCAGCCATTCAAAGAGCAGTTACACTCT
CTGCATTTGATCATGTTGCCATCCTTGTTCGACCACCTCCTGATGCTGTC
AAGCTTGTTTCTTGTGAACCAGACGAACCGTGGATGTTGGAGGTCACTGG
TGAAGGTGTGGGATGTTATCCAATTCGGAATCGATTACGTTTGTATGGAA
GAACAGGCCTTGCAAGACGAGTTGTGGCTAGACGTTTCCTGAAACCACTT
CAACCCACTTCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig77935:35..496-

>mRNA_M-pyrifera_M_contig77935.18333.1 ID=mRNA_M-pyrifera_M_contig77935.18333.1|Name=mRNA_M-pyrifera_M_contig77935.18333.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=870bp|location=Sequence derived from alignment at M-pyrifera_M_contig77935:35..496- (Macrocystis pyrifera P11B4 male)
ATGCAGTGTTTGTGTGCTCGAGGTGCTGCAGCGTCAGATCCACGTGTCCT
TTCTTGGCTTGGAGCGATTCGAGGATTGAAGCCCCGTGAACCAGCTGCAG
CACTCTCCGGAATTCCATCAGAATTATACCCAGATTCTTTTGCATCGCAC
TTGGGACCTGGTGACATACTATTGTTTGAAACATCTTCAGCAGGTGCAGC
CATTCAAAGAGCAGTTACACTCTCTGCATTTGATCATGTTGCCATCCTTG
TTCGACCACCTCCTGATGCTGTCAAGCTTGTTTCTTGTGAACCAGACGAA
CCGTGGATGTTGGAGGTCACTGGTGAAGGTGTGGGATGTTATCCAATTCG
GAATCGATTACGTTTGTATGGAAGAACAGGCCTTGCAAGACGAGTTGTGG
CTAGACGTTTCCTGAAACCACTTCAACCCACTTCTATGCAGTGTTTGTGT
GCTCGAGGTGCTGCAGCGTCAGATCCACGTGTCCTTTCTTGGCTTGGAGC
GATTCGAGGATTGAAGCCCCGTGAACCAGCTGCAGCACTCTCCGGAATTC
CATCAGAATTATACCCAGATTCTTTTGCATCGCACTTGGGACCTGGTGAC
ATACTATTGTTTGAAACATCTTCAGCAGGTGCAGCCATTCAAAGAGCAGT
TACACTCTCTGCATTTGATCATGTTGCCATCCTTGTTCGACCACCTCCTG
ATGCTGTCAAGCTTGTTTCTTGTGAACCAGACGAACCGTGGATGTTGGAG
GTCACTGGTGAAGGTGTGGGATGTTATCCAATTCGGAATCGATTACGTTT
GTATGGAAGAACAGGCCTTGCAAGACGAGTTGTGGCTAGACGTTTCCTGA
AACCACTTCAACCCACTTCT
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