mRNA_M-pyrifera_M_contig77931.18332.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig77931.18332.1
Unique NamemRNA_M-pyrifera_M_contig77931.18332.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig77931.18332.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig77931contigM-pyrifera_M_contig77931:438..965 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score74.3
Seed ortholog evalue6.2e-11
Seed eggNOG ortholog449447.MAE_34560
Hectar predicted targeting categoryother localisation
EggNOG free text desc.PEP-CTERM motif
EggNOG OGs2DTBV@1,33JMG@2
COG Functional cat.S
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size528
Cds size528
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816680.7466664-CDS-M-pyrifera_M_contig77931:437..9651622816680.7466664-CDS-M-pyrifera_M_contig77931:437..965Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77931 438..965 -
1692278116.0106611-CDS-M-pyrifera_M_contig77931:437..9651692278116.0106611-CDS-M-pyrifera_M_contig77931:437..965Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77931 438..965 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig77931.18332.1prot_M-pyrifera_M_contig77931.18332.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig77931 438..965 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig77931.18332.1

>prot_M-pyrifera_M_contig77931.18332.1 ID=prot_M-pyrifera_M_contig77931.18332.1|Name=mRNA_M-pyrifera_M_contig77931.18332.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=176bp
DTGHVPGGHGELTDGNTDTRVWGGAIPPVLSDIAPLVGWEDRHPSIQFDF
TPETRIDTVAIWFADSDGSAGVNFPRRVTLSDPGSAFSFTISPANPTGAG
TMVRLDLDDIGFVGDQLIVDVTKVGQWVHLSEVQFTTTAVPEPSSVACLA
VGAAVSVFARRRKNRRVRSASAFWH*
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mRNA from alignment at M-pyrifera_M_contig77931:438..965-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig77931.18332.1 ID=mRNA_M-pyrifera_M_contig77931.18332.1|Name=mRNA_M-pyrifera_M_contig77931.18332.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=528bp|location=Sequence derived from alignment at M-pyrifera_M_contig77931:438..965- (Macrocystis pyrifera P11B4 male)
GACACTGGCCACGTGCCAGGTGGTCATGGTGAGCTTACCGACGGGAATAC
CGACACTCGGGTTTGGGGCGGCGCGATTCCACCGGTCCTAAGTGACATCG
CTCCCCTTGTCGGATGGGAGGACAGACATCCGTCGATTCAATTTGACTTT
ACTCCGGAAACTCGGATCGACACGGTTGCCATATGGTTCGCGGACAGTGA
CGGATCGGCAGGGGTCAATTTCCCTCGTCGAGTCACATTGAGCGACCCAG
GCAGCGCATTCAGCTTCACAATTTCCCCAGCAAACCCAACTGGTGCCGGA
ACGATGGTGCGGTTGGACCTGGATGACATTGGTTTTGTTGGTGATCAACT
GATTGTTGATGTCACAAAGGTGGGGCAATGGGTCCATCTCAGTGAGGTGC
AGTTCACGACTACCGCGGTGCCAGAGCCGAGTTCCGTCGCGTGCCTCGCA
GTGGGAGCAGCCGTATCTGTCTTCGCCCGCCGACGCAAGAACCGACGAGT
TCGGAGTGCTTCCGCTTTTTGGCACTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig77931:438..965-

>mRNA_M-pyrifera_M_contig77931.18332.1 ID=mRNA_M-pyrifera_M_contig77931.18332.1|Name=mRNA_M-pyrifera_M_contig77931.18332.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1056bp|location=Sequence derived from alignment at M-pyrifera_M_contig77931:438..965- (Macrocystis pyrifera P11B4 male)
GACACTGGCCACGTGCCAGGTGGTCATGGTGAGCTTACCGACGGGAATAC
CGACACTCGGGTTTGGGGCGGCGCGATTCCACCGGTCCTAAGTGACATCG
CTCCCCTTGTCGGATGGGAGGACAGACATCCGTCGATTCAATTTGACTTT
ACTCCGGAAACTCGGATCGACACGGTTGCCATATGGTTCGCGGACAGTGA
CGGATCGGCAGGGGTCAATTTCCCTCGTCGAGTCACATTGAGCGACCCAG
GCAGCGCATTCAGCTTCACAATTTCCCCAGCAAACCCAACTGGTGCCGGA
ACGATGGTGCGGTTGGACCTGGATGACATTGGTTTTGTTGGTGATCAACT
GATTGTTGATGTCACAAAGGTGGGGCAATGGGTCCATCTCAGTGAGGTGC
AGTTCACGACTACCGCGGTGCCAGAGCCGAGTTCCGTCGCGTGCCTCGCA
GTGGGAGCAGCCGTATCTGTCTTCGCCCGCCGACGCAAGAACCGACGAGT
TCGGAGTGCTTCCGCTTTTTGGCACTAGGACACTGGCCACGTGCCAGGTG
GTCATGGTGAGCTTACCGACGGGAATACCGACACTCGGGTTTGGGGCGGC
GCGATTCCACCGGTCCTAAGTGACATCGCTCCCCTTGTCGGATGGGAGGA
CAGACATCCGTCGATTCAATTTGACTTTACTCCGGAAACTCGGATCGACA
CGGTTGCCATATGGTTCGCGGACAGTGACGGATCGGCAGGGGTCAATTTC
CCTCGTCGAGTCACATTGAGCGACCCAGGCAGCGCATTCAGCTTCACAAT
TTCCCCAGCAAACCCAACTGGTGCCGGAACGATGGTGCGGTTGGACCTGG
ATGACATTGGTTTTGTTGGTGATCAACTGATTGTTGATGTCACAAAGGTG
GGGCAATGGGTCCATCTCAGTGAGGTGCAGTTCACGACTACCGCGGTGCC
AGAGCCGAGTTCCGTCGCGTGCCTCGCAGTGGGAGCAGCCGTATCTGTCT
TCGCCCGCCGACGCAAGAACCGACGAGTTCGGAGTGCTTCCGCTTTTTGG
CACTAG
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