mRNA_M-pyrifera_M_contig77928.18329.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig77928.18329.1
Unique NamemRNA_M-pyrifera_M_contig77928.18329.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig77928.18329.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig77928contigM-pyrifera_M_contig77928:119..822 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score65.5
Seed ortholog evalue2.9e-08
Seed eggNOG ortholog69293.ENSGACP00000017089
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Si dkey-256h2.1
EggNOG OGs28MF2@1,2QTYJ@2759,39PP2@33154,3BKXU@33208,3CSSD@33213,48DC7@7711,498YQ@7742,49T0Y@7898
COG Functional cat.S
Best tax levelActinopterygii
Best eggNOG OGNA|NA|NA
Exons2
Model size522
Cds size522
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816680.6314826-CDS-M-pyrifera_M_contig77928:118..2111622816680.6314826-CDS-M-pyrifera_M_contig77928:118..211Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77928 119..211 -
1692278115.9614983-CDS-M-pyrifera_M_contig77928:118..2111692278115.9614983-CDS-M-pyrifera_M_contig77928:118..211Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77928 119..211 -
1622816680.6426547-CDS-M-pyrifera_M_contig77928:393..8221622816680.6426547-CDS-M-pyrifera_M_contig77928:393..822Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77928 394..822 -
1692278115.971684-CDS-M-pyrifera_M_contig77928:393..8221692278115.971684-CDS-M-pyrifera_M_contig77928:393..822Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77928 394..822 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig77928.18329.1prot_M-pyrifera_M_contig77928.18329.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig77928 119..822 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig77928.18329.1

>prot_M-pyrifera_M_contig77928.18329.1 ID=prot_M-pyrifera_M_contig77928.18329.1|Name=mRNA_M-pyrifera_M_contig77928.18329.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=174bp
PTFTVPVLTEEGQEGGSWTYEPSFDNSNAPLFVQAYSRNDAFLQTMWEVD
FYLRDLFIETPRNCEYLFLTHESDASVTASYLYNRLQTAMTELSVNSTAI
ANWNSRIHIASVSVSELSNTFIPELLLQWPTTITQTFARSSDNRLDGRWP
WLQSMTALLGDEKLYPLAWFSDGC
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mRNA from alignment at M-pyrifera_M_contig77928:119..822-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig77928.18329.1 ID=mRNA_M-pyrifera_M_contig77928.18329.1|Name=mRNA_M-pyrifera_M_contig77928.18329.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=704bp|location=Sequence derived from alignment at M-pyrifera_M_contig77928:119..822- (Macrocystis pyrifera P11B4 male)
CCCACGTTCACTGTCCCTGTGCTTACTGAGGAAGGGCAGGAAGGAGGGAG
CTGGACCTACGAGCCCTCCTTTGACAACAGCAATGCACCTCTCTTTGTGC
AGGCCTACAGCAGAAATGATGCGTTCCTGCAAACCATGTGGGAGGTTGAC
TTCTACCTGCGAGATCTCTTCATTGAGACGCCCAGAAACTGTGAATATCT
CTTCTTGACACACGAGAGCGACGCGAGTGTGACGGCGTCGTACCTCTACA
ACCGCCTTCAGACTGCAATGACTGAGCTCTCTGTGAACTCCACTGCCATC
GCCAACTGGAACAGCCGTATCCACATTGCCTCTGTCTCGGTATCAGAGCT
GTCGAACACCTTCATTCCCGAGCTCTTGCTGCAGTGGCCCACCACCATCA
CCCAGACATTCGCCCGCTCCTCCGACAACGTACGTTCCCTTCCAGGCTCA
GATCTTAGGGCTCACTTTAGTCATACCCTTTCTTGCTACGTATTCCACTG
CACACACCTCGCTTTCATTGTCCATTTCTCCAGCTCTCTCTCTCTCTCTC
CCTCACTCTTTCTACGAGATTGCTCACAAGATAGCCTTACGATGAACACA
CGACAATGAAGAGGCTGGACGGCAGATGGCCTTGGCTGCAGTCAATGACG
GCGCTGCTGGGAGACGAGAAGCTGTATCCCCTTGCTTGGTTCTCCGATGG
CTGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig77928:119..822-

>mRNA_M-pyrifera_M_contig77928.18329.1 ID=mRNA_M-pyrifera_M_contig77928.18329.1|Name=mRNA_M-pyrifera_M_contig77928.18329.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1044bp|location=Sequence derived from alignment at M-pyrifera_M_contig77928:119..822- (Macrocystis pyrifera P11B4 male)
CCCACGTTCACTGTCCCTGTGCTTACTGAGGAAGGGCAGGAAGGAGGGAG
CTGGACCTACGAGCCCTCCTTTGACAACAGCAATGCACCTCTCTTTGTGC
AGGCCTACAGCAGAAATGATGCGTTCCTGCAAACCATGTGGGAGGTTGAC
TTCTACCTGCGAGATCTCTTCATTGAGACGCCCAGAAACTGTGAATATCT
CTTCTTGACACACGAGAGCGACGCGAGTGTGACGGCGTCGTACCTCTACA
ACCGCCTTCAGACTGCAATGACTGAGCTCTCTGTGAACTCCACTGCCATC
GCCAACTGGAACAGCCGTATCCACATTGCCTCTGTCTCGGTATCAGAGCT
GTCGAACACCTTCATTCCCGAGCTCTTGCTGCAGTGGCCCACCACCATCA
CCCAGACATTCGCCCGCTCCTCCGACAACCCCACGTTCACTGTCCCTGTG
CTTACTGAGGAAGGGCAGGAAGGAGGGAGCTGGACCTACGAGCCCTCCTT
TGACAACAGCAATGCACCTCTCTTTGTGCAGGCCTACAGCAGAAATGATG
CGTTCCTGCAAACCATGTGGGAGGTTGACTTCTACCTGCGAGATCTCTTC
ATTGAGACGCCCAGAAACTGTGAATATCTCTTCTTGACACACGAGAGCGA
CGCGAGTGTGACGGCGTCGTACCTCTACAACCGCCTTCAGACTGCAATGA
CTGAGCTCTCTGTGAACTCCACTGCCATCGCCAACTGGAACAGCCGTATC
CACATTGCCTCTGTCTCGGTATCAGAGCTGTCGAACACCTTCATTCCCGA
GCTCTTGCTGCAGTGGCCCACCACCATCACCCAGACATTCGCCCGCTCCT
CCGACAACAGGCTGGACGGCAGATGGCCTTGGCTGCAGTCAATGACGGCG
CTGCTGGGAGACGAGAAGCTGTATCCCCTTGCTTGGTTCTCCGATGGCTG
CAGGCTGGACGGCAGATGGCCTTGGCTGCAGTCAATGACGGCGCTGCTGG
GAGACGAGAAGCTGTATCCCCTTGCTTGGTTCTCCGATGGCTGC
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