mRNA_M-pyrifera_M_contig7791.18324.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7791.18324.1
Unique NamemRNA_M-pyrifera_M_contig7791.18324.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig7791.18324.1 vs. uniprot
Match: D8LMS0_ECTSI (SNF2-related domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMS0_ECTSI)

HSP 1 Score: 567 bits (1461), Expect = 4.630e-189
Identity = 338/530 (63.77%), Postives = 378/530 (71.32%), Query Frame = 1 
Query:    1 MEFTCLWSKDAHHKKRKRWTDGIARFSPATGLLSVWDQDDSAKISSMRLKPDEAAAILQEDGGEARIGGVSIQIMANISQRRQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGEGTPASGGSSFPSARQTAAAAIATVATTVGAAGSSVANGNRVGLGGAGRGKGGARRFHAPRLSREAAPSSVNTGPRPASGTRLVAARDQQGARKLGAEGGGAPCGRASAXXXXXXXXXXXXXXXXXSR----AAVNREDLVLEWNGENPPRPLLAGASLARRLHPHQREGLKVLWECLAGRGGYEGRGAILADEMGLGKTATAIALCTCVLRHRRAECRKAVVVCPSSLVKNWANEFRKWCPLGGGAVAADQAGSAAAQLVADFKIGAPARYPILVISYELYRNHGKIVNATEGLGLLIADEGHRLKNSSETKTTRALKACPAVMRLVLTGTPMQNDLDEFFAVADFANPGVLGTLKGFRSRYTRPIKAAWDREAGEDVAELSAERTRELGEV 1578
            MEFTCLWSKDA  KKRKRWTDGIARFSPATG+LS+WDQD SAK+SS RLKPDEA+A+LQEDG E+R    ++   +  +                                                        A  G     G   P         +A   T+V   G  +    R GLGGAGRG GGARRFHAPR S  AA  +     R +    L  + ++  AR++    GG+    A  XXXXXXXXXXXXXXXXX      + ++ + LVLEW   +PP+P++AGASLARRLHPHQREGLK+LWECLAGRGGYEGRGAILADEMGLGKTATAIALCTCVLRHRRAECRKAVV+CPSSLV NWANEFRKWCPLGGGAVA DQAG+AAAQLV+DFKIGA ARYPILVISYELYRNHGK++NATEGLGLLIADEGHRLKNS+ETKTTRALKACPAVMRLVLTGTPMQNDLDEFFAVADF NPG+LG+LK FRSRYTRPIKAAWDR+A ED AELSAERTRELGE+
Sbjct:    1 MEFTCLWSKDAQQKKRKRWTDGIARFSPATGVLSIWDQDASAKVSSTRLKPDEASAVLQEDGDESRS---TLDAASETASTTGGGSAAASGKVTGTPVRLATASGVKLGPSKKLGATSMLGKAGPRSLLSAPAAAAPLGNGIRSGVVGP---------VAGTMTSVLGGGGGI---KRTGLGGAGRGVGGARRFHAPRSSGAAA-VAAGANERESKNHELGGS-EKSLARRVSPGTGGSFSRSAGXXXXXXXXXXXXXXXXXXXXXXXASGLSPDGLVLEWTAGDPPQPVMAGASLARRLHPHQREGLKMLWECLAGRGGYEGRGAILADEMGLGKTATAIALCTCVLRHRRAECRKAVVICPSSLVGNWANEFRKWCPLGGGAVAVDQAGAAAAQLVSDFKIGAAARYPILVISYELYRNHGKVINATEGLGLLIADEGHRLKNSAETKTTRALKACPAVMRLVLTGTPMQNDLDEFFAVADFVNPGLLGSLKSFRSRYTRPIKAAWDRDANEDAAELSAERTRELGEM 513
[Close]
BLAST of mRNA_M-pyrifera_M_contig7791.18324.1 vs. uniprot
Match: A0A6H5JTI7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTI7_9PHAE)

HSP 1 Score: 479 bits (1232), Expect = 1.190e-154
Identity = 331/515 (64.27%), Postives = 368/515 (71.46%), Query Frame = 1 
Query:   97 LSVWDQDDSAKISSMRLKPDEAAAILQEDGGEARIGGVSIQIMANISQRRQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTA----GEGTPASGGSSFPSA--------RQTAAAAIATVATTVGAAGSSVANGNRVGLGGAGRGKGGARRFHAPRLSREAAPSSVNTGPRPASGTRLVAARDQQGARKLGAEGG------GAPCGRASAXXXXXXXXXXXXXXXXXSRA---AVNREDLVLEWNGENPPRPLLAGASLARRLHPHQREGLKVLWECLAGRGGYEGRGAILADEMGLGKTATAIALCTCVLRHRRAECRKAVVVCPSSLVKNWANEFRKWCPLGGGAVAADQAGSAAAQLVADFKIGAPARYPILVISYELYRNHGKIVNATEGLGLLIADEGHRLKNSSETKTTRALKACPAVMRLVLTGTPMQNDLDEFFAVADFANPGVLGTLKGFRSRYTRPIKAAWDREAGEDVAELSAERTRELGEV 1578
            L++   D S K+SS RLKPDEA+ +LQEDG E R+GG+SIQIMA++  +   XXXXXXXXXXXXXXXXXXXXXXXX                           A    G+  P S   S P+A        R  A    A   T+V           R GLGGAGRG GGARRFHAPR S  AA  +     R +   +L  +      R     GG      GA  GR S   XXXXXXXXXXXXXXX       ++ E LVLEW   +PP+P++AGASLARRL+PHQREGLK+LWECLAGRGGYEGRGAILADEMGLGKTATAIALC CVLRHRRAEC KAVVVCPSSLV+NWANE +   P GGGAVA DQAG+AAAQLV+DFKIGA ARYPILVISYELYRNHGK++NATEGLGLLIADEGHRLKN++ETKTTRALKACPAVMRLVLTGTPMQNDLDEFFAVADF NPG+LG+LK FRSRYTRPIKAAWDR+A ED AELS ERTRELGE+
Sbjct:    3 LTLPAADASVKVSSTRLKPDEASVVLQEDGNETRVGGISIQIMADVGGQXXXXXXXXXXXXXXXXXXXXXXXXXXXSSGKVTRTPVRPAEASGVKLGPRKRLGATSMLGKVGPRSL-LSVPAAAVPLGNGIRSGAVGPAAGTTTSVLGXXXXXXGIKRTGLGGAGRGVGGARRFHAPRSSGAAAVVAAGANERESKNHKLGGSEKSLARRVSPGRGGSFSRSAGAGHGRDSGGGXXXXXXXXXXXXXXXXXXXXXGLSPEGLVLEWTAGDPPQPVIAGASLARRLYPHQREGLKMLWECLAGRGGYEGRGAILADEMGLGKTATAIALCMCVLRHRRAECPKAVVVCPSSLVRNWANEVQSRGP-GGGAVAVDQAGAAAAQLVSDFKIGAAARYPILVISYELYRNHGKVINATEGLGLLIADEGHRLKNAAETKTTRALKACPAVMRLVLTGTPMQNDLDEFFAVADFVNPGLLGSLKSFRSRYTRPIKAAWDRDANEDAAELSTERTRELGEM 515
[Close]
BLAST of mRNA_M-pyrifera_M_contig7791.18324.1 vs. uniprot
Match: A0A4D9CX44_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CX44_9STRA)

HSP 1 Score: 208 bits (530), Expect = 1.990e-54
Identity = 126/258 (48.84%), Postives = 154/258 (59.69%), Query Frame = 1 
Query:  835 GENPPRPLLAGASLARRLHPHQREGLKVLWECLAGRG--GYEGRGAILADEMGLGKTATAIALCTCVLR-----HRRAECRKAVVVCPSSLVKNWANEFRKWCPLGGGAVAADQA-GSA-----AAQLVADFKIGAPARYPILVISYELYRNHGKIVNATEGLGLLIADEGHRLKNSSETKTTRALKACPAVMRLVLTGTPMQNDLDEFFAVADFANPGVLGTLKGFRSRYTRPIKAAWDREAGEDVAELSAERTREL 1569
            GE P +P++  A L R L PHQREG+  LW CL GRG     GRGAILAD+MGLGKT   IAL   + R     HR A+  KAVVVCPSSL+  WA E +KW  +    +  D A G A     A + V  F   +     +L ISYE YR H   +NA + +GLLI DE HRLK    +KT  AL A PA  RL LTGTP+QNDL+EF+++ DF NPGVLGT+  FRS Y  PI  A D +A     +   +RTRE+
Sbjct:  514 GEVPTKPVVLEAFLGRILRPHQREGVAFLWRCLTGRGQPSRMGRGAILADDMGLGKTLQTIALLWALTRQSPFQHRYADVEKAVVVCPSSLLNQWAAELKKWLQVRLSFMVVDSAMGKALGKGDAKEQVNTFCTSSGQHSTVLFISYEGYRIHAAALNACQQIGLLICDEAHRLKEGG-SKTLVALAASPAQARLALTGTPVQNDLEEFYSLVDFVNPGVLGTISSFRSNYISPILRARDPKASSVTKQCGEQRTREV 770
[Close]
BLAST of mRNA_M-pyrifera_M_contig7791.18324.1 vs. uniprot
Match: A0A5A8CH06_CAFRO (Uncharacterized protein n=5 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CH06_CAFRO)

HSP 1 Score: 198 bits (503), Expect = 6.310e-51
Identity = 122/287 (42.51%), Postives = 161/287 (56.10%), Query Frame = 1 
Query:  790 SRAAVNREDLVLEWNGENPPRPLLAGASLARRLHPHQREGLKVLWECLAGRGGYEGRGAILADEMGLGKTATAIALCTCVLRHRRAEC---RKAVVVCPSSLVKNWANEFRKWCPLGGGA---VAADQAGSAAAQLVADFKIGAPARYPILVISYELYRNHGKIVN----------------ATEG--LGLLIADEGHRLKNSSETKTTRALKACPAVMRLVLTGTPMQNDLDEFFAVADFANPGVLGTLKGFRSRYTRPIKAAWDREAGEDVAELSAERTRELGEV 1578
            SR A+ +   V+  +G  P  P++   +LA  L PHQ  G++ LWEC+AG   + G GA+LAD MGLGKT  AI L    L+          KAVVVCPSSLV NW  EFRKW  LG      +A  + G  A Q V DF + + +  P+L++SYE +R +  ++N                A  G  +GLL+ DEGHRLKNS   +T  AL ACP   R++LTGTP+QN LDEF+A   F NP VLG L  FR  +  PI+   D+ A  +   + AER++EL  V
Sbjct:  200 SRLALQQACGVVGADGR-PQVPVVVDPALASALRPHQVAGIRFLWECVAGMRPFSGAGAVLADAMGLGKTLQAITLIYTALKQSLGGAPLATKAVVVCPSSLVANWRREFRKW--LGDQKCRPIAVTKGGKEAEQAVKDFCLSSSSVSPVLIVSYEQFRRYAGLINGGAAAAGSGASTKSGAAKRGCDVGLLVCDEGHRLKNSDGNQTIAALAACPCRRRVILTGTPIQNRLDEFYACCSFVNPDVLGPLNVFRRVFQTPIQRGRDKSASPEEQAIGAERSKELSRV 483
[Close]
BLAST of mRNA_M-pyrifera_M_contig7791.18324.1 vs. uniprot
Match: A0A1X6PCH4_PORUM (Uncharacterized protein n=2 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PCH4_PORUM)

HSP 1 Score: 196 bits (497), Expect = 3.490e-50
Identity = 114/248 (45.97%), Postives = 147/248 (59.27%), Query Frame = 1 
Query:  853 PLLAGASLARRLHPHQREGLKVLWECLAGRGGY--EGRGAILADEMGLGKTATAIALCTCVLRHRRAECRKAVVVCPSSLVKNWANEFRKWCPLGGGAVAADQAGSA----AAQLVADFKIGAPARYPILVISYELYRNHGKIVNATEGLGLLIADEGHRLKNSSETKTTRALKACPAVMRLVLTGTPMQNDLDEFFAVADFANPGVLGTLKGFRSRYTRPIKAAWDREAGEDVAELSAERTRELGEV 1578
            P++    L + L PHQREG++ L++C++G  G    GRGAILAD MGLGK+  A++L   VL+ R    RKA++VCP+SLV NW  E  KW         A Q+GS     A Q +A F  G     P+L++SY++ R H + +NA  G GLL+ DEGHRLK S   KT  AL A     R++LTGTP+QNDL+EFFA+  F NP  LGTL  FRS +  PI A+ D  AG     L   R  EL  V
Sbjct:  274 PVVMDPYLGKCLRPHQREGIRFLYKCVSGGAGVPGSGRGAILADSMGLGKSLQALSLLWTVLKQRGPLVRKAIIVCPASLVSNWVKEVNKWLGTERLKPVAVQSGSGGGSGANQELAAFVHG---NRPLLIVSYDMLRVHVESINAGRGCGLLVCDEGHRLKASGGNKTIAALSALKCDRRVILTGTPVQNDLEEFFAMCSFVNPACLGTLSSFRSVFAAPILASRDASAGRKERALGRARALELSRV 518
[Close]
BLAST of mRNA_M-pyrifera_M_contig7791.18324.1 vs. uniprot
Match: A0A196SG06_BLAHN (RAD54, DNA repair and recombination protein n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SG06_BLAHN)

HSP 1 Score: 193 bits (491), Expect = 1.130e-49
Identity = 108/252 (42.86%), Postives = 156/252 (61.90%), Query Frame = 1 
Query:  841 NPPRPLLAGASLARRLHPHQREGLKVLWECLAGRGGYEGRGAILADEMGLGKTATAIALCTCVLRHR---RAECRKAVVVCPSSLVKNWANEFRKWCPLGGGAVAA---DQAGSAAAQLVADFKIGAPARYPILVISYELYRNHGKIVNATEGLGLLIADEGHRLKNSSETKTTRALKACPAVMRLVLTGTPMQNDLDEFFAVADFANPGVLGTLKGFRSRYTRPIKAAWDREAGEDVAELSAERTRELGEV 1578
            N   P++   +L +++ PHQ+EGL  L+ C+ G GG+ G G ILADEMGLGKT TAI+L    L            AVV CPSSLV+NW NEFRKW  LG   V      + G  A + V DF + +  +  +L+ISYE+YR +   +NA++  GLL+ DEGHRLK+SS   T  +L+  P+  R++L+GTP+QND++E FA++ F NP +  +L  FR  + RPI+A   ++A E+  +L+  R+ EL  +
Sbjct:  226 NTTAPVILDPALNQKMKPHQKEGLLFLYNCINGLGGFNGNGCILADEMGLGKTLTAISLIFTALTQSPWATPLITSAVVTCPSSLVENWGNEFRKW--LGRDKVRCLILSEKGEKAEEKVNDFVMQSGLKRVVLIISYEMYRRYADKINASKA-GLLVCDEGHRLKSSSGNATIDSLRQFPSTRRVLLSGTPIQNDMEELFALSVFVNPAIFPSLASFRELFVRPIEAGRRKDASENERQLANMRSDELSRI 474
[Close]
BLAST of mRNA_M-pyrifera_M_contig7791.18324.1 vs. uniprot
Match: R7QM18_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QM18_CHOCR)

HSP 1 Score: 193 bits (490), Expect = 2.310e-49
Identity = 114/251 (45.42%), Postives = 156/251 (62.15%), Query Frame = 1 
Query:  853 PLLAGASLARRLHPHQREGLKVLWECLAG---RGGYEGRGAILADEMGLGKTATAIALCTCVLRHR---RAECRKAVVVCPSSLVKNWANEFRKWCP---LGGGAVAADQAGSAAAQLVADFKIGAPARYPILVISYELYRNHGKIVNATEGLGLLIADEGHRLKNSSETKTTRALKACPAVMRLVLTGTPMQNDLDEFFAVADFANPGVLGTLKGFRSRYTRPIKAAWDREAGEDVAELSAERTRELGEV 1578
            P++    LA+R+ PHQREG+K L+ C+ G     G  G+GAILADEMGLGK+  AI L   VL+         RKAV+VCP+SLV+NW NE +KW     L   AVA+  +   + + +A F  G   R  +L+ISYE++R++ + +  ++ +GLL+ DEGHRLK+S   KT  ALK  P   R++LTGTP+QNDL+EFFAV DF NPG L +L  FR+ +  PI A+ D  A      +   R RELG +
Sbjct:  215 PIVLDPFLAKRMRPHQREGVKFLYHCVQGLFFMTGEGGQGAILADEMGLGKSLQAIGLIWTVLKQHPGGNPGVRKAVIVCPASLVQNWVNEVKKWLGDDRLEPVAVASGSSTFESKEALAAFINGNVRR--LLIISYEMFRSYAEQMYKSK-IGLLVCDEGHRLKSSQGNKTIEALKKLPCRGRVILTGTPVQNDLEEFFAVCDFVNPGCLNSLASFRTVFANPIIASRDSNASNSAMTIGDSRARELGRI 462
[Close]
BLAST of mRNA_M-pyrifera_M_contig7791.18324.1 vs. uniprot
Match: A0A2R7WYK7_ONCFA (Helicase ATP-binding domain-containing protein (Fragment) n=1 Tax=Oncopeltus fasciatus TaxID=7536 RepID=A0A2R7WYK7_ONCFA)

HSP 1 Score: 178 bits (452), Expect = 5.820e-49
Identity = 109/237 (45.99%), Postives = 145/237 (61.18%), Query Frame = 1 
Query:  886 LHPHQREGLKVLWECLAGRGGYEGRGAILADEMGLGKTATAIALCTCVLR---HRRAECRKAVVVCPSSLVKNWANEFRKWCPLGG--GAVAADQAGSAAAQ-LVADFKIGAPAR---YPILVISYELYRNHGKIVNATEGLGLLIADEGHRLKNSSETKTTRALKACPAVMRLVLTGTPMQNDLDEFFAVADFANPGVLGTLKGFRSRYTRPIKAAWDREAGEDVAELSAERTREL 1569
            L PHQREG+K ++EC+ G       G I+ADEMGLGKT   I L   +L+   H + E  KA++V PSSLVKNW NE +KW  LGG   A+A +  G+   +  V DF    P R   +PILVISYE +R H KI+++ E +GL++ DEGHRLKN  E +T  AL       R++L+GTP+QNDL E+F++  F N G+LGT + FR +Y  PI    D  A     EL+ ER  +L
Sbjct:    5 LRPHQREGVKFMYECVTGVRIENAYGCIMADEMGLGKTLQCITLMWTLLKQSPHAKPEIDKAIIVAPSSLVKNWCNEIQKW--LGGRVNAIAVEGGGTKVVEGQVRDFMSAPPGRRNTHPILVISYETFRIHAKILHS-EPIGLVLCDEGHRLKNR-ENQTYLALTGLDCRRRVLLSGTPIQNDLLEYFSLVHFVNEGILGTAQEFRKQYELPILKGQDSMASSKERELAKERLMQL 237
[Close]
BLAST of mRNA_M-pyrifera_M_contig7791.18324.1 vs. uniprot
Match: A0A812VS04_9DINO (RAD54B protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812VS04_9DINO)

HSP 1 Score: 186 bits (472), Expect = 6.060e-47
Identity = 108/248 (43.55%), Postives = 142/248 (57.26%), Query Frame = 1 
Query:  853 PLLAGASLARRLHPHQREGLKVLWECLAGRGGYEGRGAILADEMGLGKTATAIALCTCVLRHR---RAECRKAVVVCPSSLVKNWANEFRKWCPLGGGA---VAADQAGSAAAQLVADFKIGAPARYPILVISYELYRNHGKIVNATEGLGLLIADEGHRLKNSSETKTTRALKACPAVMRLVLTGTPMQNDLDEFFAVADFANPGVLGTLKGFRSRYTRPIKAAWDREAGEDVAELSAERTRELGEV 1578
            P++    LA  L PHQREG+K LWEC AG    +G G ILADEMGLGKT   I L   +L+          K ++ CPS+LV NW  EF KW  LG       A  + G  A  +V DF  G  + YP+L++SYE+ R   K + A+  +GLL+ DEGHRLKNSS  +T  AL A P   +++LTGTP+QNDL EF+A+  F NP  LG    FR  + +PI+   D  A     +L+ +R  EL  +
Sbjct:  633 PVVVDPHLANVLRPHQREGVKFLWECCAGMRSIKGEGCILADEMGLGKTLQTITLVYTMLKQSVTGAGLASKVIIACPSTLVGNWKKEFGKW--LGSTRCKPAAVTKTGKVAEGVVHDFVHGRSSMYPVLILSYEMCRKFSKAL-ASARVGLLVCDEGHRLKNSSGNQTIAALAALPTRRKVLLTGTPVQNDLLEFYAMCSFVNPAELGDPTMFRRLFAKPIQDGRDTRASPAEVQLARQRADELARI 877
[Close]
BLAST of mRNA_M-pyrifera_M_contig7791.18324.1 vs. uniprot
Match: A0A1E1XEI6_9ACAR (Putative dna repair and recombination protein rad54b (Fragment) n=1 Tax=Amblyomma aureolatum TaxID=187763 RepID=A0A1E1XEI6_9ACAR)

HSP 1 Score: 180 bits (457), Expect = 1.300e-46
Identity = 112/250 (44.80%), Postives = 141/250 (56.40%), Query Frame = 1 
Query:  844 PPRPLLAGASLARRLHPHQREGLKVLWECLAGRGGYEGRGAILADEMGLGKTATAIALCTCVLRHR----RAECRKAVVVCPSSLVKNWANEFRKWCPLGGGAVA-ADQAGSAAAQLVADFKIGAPARYPILVISYELYRNHGKIVNATEGLGLLIADEGHRLKNSSETKTTRALKACPAVMRLVLTGTPMQNDLDEFFAVADFANPGVLGTLKGFRSRYTRPIKAAWDREAGEDVAELSAERTRELGEV 1578
            P   ++   SLAR L PHQREG+  L+EC+     + G GAILADEMGLGKT   IAL   +LR      +   RK ++V PSSLVKNW  EF+KW       V   DQ          D  +  P+ YP+LV+SYE+Y      + A     LLI DE HRLKN++  KTT +L     + R++LTGTP+QNDL EFFA+ DF NPG+LG +  FR  Y  PI  +    A E+  EL   R  EL EV
Sbjct:   60 PVTDVVVEESLARCLRPHQREGVVFLYECIMQMRSFNGCGAILADEMGLGKTLQCIALIWTLLRQGPYGGQPLLRKVIIVTPSSLVKNWVREFKKWLVNRNLRVYHVDQNNKI------DVFLKQPSLYPVLVLSYEMYMRTSNSLLAGVNFDLLICDEAHRLKNAN-IKTTESLHNMGTLRRILLTGTPIQNDLQEFFALVDFCNPGILGKVSSFRRLYEEPILRSQLPRASEEEKELGKARANELVEV 302
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7791.18324.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMS0_ECTSI4.630e-18963.77SNF2-related domain-containing protein n=1 Tax=Ect... [more]
A0A6H5JTI7_9PHAE1.190e-15464.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A4D9CX44_9STRA1.990e-5448.84Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A5A8CH06_CAFRO6.310e-5142.51Uncharacterized protein n=5 Tax=Cafeteria roenberg... [more]
A0A1X6PCH4_PORUM3.490e-5045.97Uncharacterized protein n=2 Tax=Porphyra umbilical... [more]
A0A196SG06_BLAHN1.130e-4942.86RAD54, DNA repair and recombination protein n=1 Ta... [more]
R7QM18_CHOCR2.310e-4945.42Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A2R7WYK7_ONCFA5.820e-4945.99Helicase ATP-binding domain-containing protein (Fr... [more]
A0A812VS04_9DINO6.060e-4743.55RAD54B protein (Fragment) n=1 Tax=Symbiodinium sp.... [more]
A0A1E1XEI6_9ACAR1.300e-4644.80Putative dna repair and recombination protein rad5... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7791contigM-pyrifera_M_contig7791:5399..11894 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score573.9
Seed ortholog evalue7.5e-161
Seed eggNOG ortholog2880.D8LMS0
Preferred nameRAD54B
KEGG koko:K06811,ko:K10779,ko:K10875,ko:K10877
KEGG Pathwayko03440,ko05226,map03440,map05226
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000280,GO:0000724,GO:0000725,GO:0000819,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003690,GO:0003724,GO:0003824,GO:0004003,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006312,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007127,GO:0007131,GO:0007135,GO:0007275,GO:0007568,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0008340,GO:0009314,GO:0009628,GO:0009987,GO:0010212,GO:0010259,GO:0015616,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022402,GO:0022414,GO:0030491,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0033554,GO:0034641,GO:0035825,GO:0042221,GO:0042493,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0045132,GO:0045144,GO:0046483,GO:0048285,GO:0048856,GO:0050896,GO:0051276,GO:0051321,GO:0051716,GO:0061982,GO:0061983,GO:0070035,GO:0070192,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0098813,GO:0140013,GO:0140097,GO:0140098,GO:1901360,GO:1901363,GO:1903046
EggNOG free text desc.DNA repair and recombination protein
EggNOG OGsCOG0553@1,KOG0390@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03000,ko03036,ko03400,ko04516
Exons9
Model size1578
Cds size1578
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816680.3533354-CDS-M-pyrifera_M_contig7791:5398..55121622816680.3533354-CDS-M-pyrifera_M_contig7791:5398..5512Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7791 5399..5512 +
1692278115.8105767-CDS-M-pyrifera_M_contig7791:5398..55121692278115.8105767-CDS-M-pyrifera_M_contig7791:5398..5512Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7791 5399..5512 +
1622816680.363617-CDS-M-pyrifera_M_contig7791:6052..62691622816680.363617-CDS-M-pyrifera_M_contig7791:6052..6269Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7791 6053..6269 +
1692278115.8213596-CDS-M-pyrifera_M_contig7791:6052..62691692278115.8213596-CDS-M-pyrifera_M_contig7791:6052..6269Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7791 6053..6269 +
1622816680.374153-CDS-M-pyrifera_M_contig7791:6551..70151622816680.374153-CDS-M-pyrifera_M_contig7791:6551..7015Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7791 6552..7015 +
1692278115.8291736-CDS-M-pyrifera_M_contig7791:6551..70151692278115.8291736-CDS-M-pyrifera_M_contig7791:6551..7015Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7791 6552..7015 +
1622816680.3850877-CDS-M-pyrifera_M_contig7791:7069..72211622816680.3850877-CDS-M-pyrifera_M_contig7791:7069..7221Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7791 7070..7221 +
1692278115.8379178-CDS-M-pyrifera_M_contig7791:7069..72211692278115.8379178-CDS-M-pyrifera_M_contig7791:7069..7221Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7791 7070..7221 +
1622816680.3968978-CDS-M-pyrifera_M_contig7791:7660..78201622816680.3968978-CDS-M-pyrifera_M_contig7791:7660..7820Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7791 7661..7820 +
1692278115.847369-CDS-M-pyrifera_M_contig7791:7660..78201692278115.847369-CDS-M-pyrifera_M_contig7791:7660..7820Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7791 7661..7820 +
1622816680.4120817-CDS-M-pyrifera_M_contig7791:9081..92211622816680.4120817-CDS-M-pyrifera_M_contig7791:9081..9221Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7791 9082..9221 +
1692278115.858655-CDS-M-pyrifera_M_contig7791:9081..92211692278115.858655-CDS-M-pyrifera_M_contig7791:9081..9221Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7791 9082..9221 +
1622816680.4260302-CDS-M-pyrifera_M_contig7791:10264..104031622816680.4260302-CDS-M-pyrifera_M_contig7791:10264..10403Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7791 10265..10403 +
1692278115.8709147-CDS-M-pyrifera_M_contig7791:10264..104031692278115.8709147-CDS-M-pyrifera_M_contig7791:10264..10403Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7791 10265..10403 +
1622816680.437369-CDS-M-pyrifera_M_contig7791:11144..112421622816680.437369-CDS-M-pyrifera_M_contig7791:11144..11242Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7791 11145..11242 +
1692278115.8808553-CDS-M-pyrifera_M_contig7791:11144..112421692278115.8808553-CDS-M-pyrifera_M_contig7791:11144..11242Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7791 11145..11242 +
1622816680.4492626-CDS-M-pyrifera_M_contig7791:11800..118941622816680.4492626-CDS-M-pyrifera_M_contig7791:11800..11894Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7791 11801..11894 +
1692278115.8960528-CDS-M-pyrifera_M_contig7791:11800..118941692278115.8960528-CDS-M-pyrifera_M_contig7791:11800..11894Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7791 11801..11894 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7791.18324.1prot_M-pyrifera_M_contig7791.18324.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7791 5399..11894 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7791.18324.1

>prot_M-pyrifera_M_contig7791.18324.1 ID=prot_M-pyrifera_M_contig7791.18324.1|Name=mRNA_M-pyrifera_M_contig7791.18324.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=526bp
MEFTCLWSKDAHHKKRKRWTDGIARFSPATGLLSVWDQDDSAKISSMRLK
PDEAAAILQEDGGEARIGGVSIQIMANISQRRQPQQQQQQQQQQQTSPPH
GGGKTSTFAIASPPPPRRGFANGSDLAPPPPPPETAGEGTPASGGSSFPS
ARQTAAAAIATVATTVGAAGSSVANGNRVGLGGAGRGKGGARRFHAPRLS
REAAPSSVNTGPRPASGTRLVAARDQQGARKLGAEGGGAPCGRASAGGGR
GGGTDDVGGGGGASRAAVNREDLVLEWNGENPPRPLLAGASLARRLHPHQ
REGLKVLWECLAGRGGYEGRGAILADEMGLGKTATAIALCTCVLRHRRAE
CRKAVVVCPSSLVKNWANEFRKWCPLGGGAVAADQAGSAAAQLVADFKIG
APARYPILVISYELYRNHGKIVNATEGLGLLIADEGHRLKNSSETKTTRA
LKACPAVMRLVLTGTPMQNDLDEFFAVADFANPGVLGTLKGFRSRYTRPI
KAAWDREAGEDVAELSAERTRELGEV
back to top

mRNA from alignment at M-pyrifera_M_contig7791:5399..11894+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7791.18324.1 ID=mRNA_M-pyrifera_M_contig7791.18324.1|Name=mRNA_M-pyrifera_M_contig7791.18324.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=6496bp|location=Sequence derived from alignment at M-pyrifera_M_contig7791:5399..11894+ (Macrocystis pyrifera P11B4 male)
ATGGAGTTCACCTGCCTGTGGTCGAAGGACGCCCACCACAAGAAGAGGAA
GAGGTGGACGGACGGCATCGCGCGGTTTTCGCCTGCTACCGGGTTGCTCA
GCGTGTGGGACCAGGTGCGACGCAACGAGCGACTCTGATGATGTCCTTTA
GTCTTGGGGGTGGTAGGCTTAGAGGACAACGCGATCACGACGCTGTGTCT
GCCTTTTTATCACGCCCGAGGCCTCGCGTCTCACTCCCCTTACAGCATAC
CAGGTAACTACTACTACTATTAATAGTACGATACAGCAGTACGGTGGTGC
ATACCCGGTAAACGGGAAATGCCGGGTATCAGTCTGCAACAGCATTAGAC
TGTCTTCCCTTTTGTCTCCGCGCTGAGCACGGTGATGGGCACGCCCGCCG
CCATCGACGAAACCGCTAGTTTTCGAGTTATTTCCAGTGACGAGGCGATG
TTTTCAGGTTTCGATCGTTTTCGCTTCTCGTTCTACTGCTGTAATCACAC
TGCTGCTGTTGCTGCTGCTGCTCCTGTATTGTGTTCGCCGAACCTACCCC
ACGGTCCCGCTCGTACAGTTTCTCTTTCGCCGATCATACCGGTTGCTGCT
GTTGCTGCTCAATTCTTTTTTGCACGCGTCCGCAACCCGCCACCGCCGCT
CCAGGACGATTCCGCGAAGATTTCCTCCATGCGCCTGAAGCCCGACGAGG
CCGCCGCGATTCTGCAAGAAGATGGCGGTGAGGCACGAATAGGCGGCGTC
AGCATCCAGATCATGGCGAACATCAGCCAGCGACGGCAGCCGCAGCAGCA
GCAACAACAACAACAGCAACAACAAACTTCTCCCCCGCACGGGGGAGGCA
AGACCAGCACCTTCGCCATAGGTACCAAGGACGGTGCACAACGCTCGCGG
TTGGGTCCTGCAGGTGCGGGGTTCAGGCGCGGGGGGCTAGGCGCGGGTAT
ATCGCCTCCCTCGAAGAACCTCACCGGCGGCGGCGACGACGACACTGGAA
CGCCGACGATAATTTCTGAAGCGGCCGAGGTGCCCGAAGCAATCGACACT
CCCGCTGCAAGCACCCGCTTTGGCCACGGCGGCCGCCCAGGCGTGGGCCT
GAAGCGGCGCGTGTTCAAGCCTCTGATGTCTAGGTCAGCGACGGTGGCGG
CAGCATCACCGCCGCCGCCGCGGCGCGGTTTCGCGAACGGCTCTGACCTT
GCTCCGCCTCCGCCGCCGCCCGAAACTGCCGGCGAGGGCACACCCGCTTC
CGGCGGTTCTTCCTTTCCCAGCGCTCGACAGACCGCCGCCGCCGCCATCG
CCACCGTCGCCACCACCGTGGGCGCGGCCGGATCCAGCGTTGCTAACGGA
AATCGAGTAGGGCTCGGGGGCGCCGGGAGGGGCAAGGGCGGGGCGCGGCG
ATTCCACGCCCCTCGGCTTTCGAGAGAGGCGGCGCCATCGAGCGTAAACA
CCGGCCCGCGCCCCGCGAGCGGGACGAGATTGGTCGCCGCTCGTGACCAG
CAAGGAGCGAGAAAGCTCGGGGCAGAGGGTGGAGGAGCACCGTGCGGCCG
GGCGTCGGCCGGCGGTGGCAGAGGCGGCGGAACCGATGACGTCGGTGGTG
GTGGCGGTGCCTCGCGCGTCGTCGTCGACTCCCTGGCCCCGATGGCCTCC
CCCGCCTGTCGAAGCGCTGAGGCGGCGGTGAATCGGGAAGACCTAGTTCT
GGAGTGGAACGGGGAGAACCCGCCGCGGCCGCTCTTGGCCGGCGCTTCCC
TTGCGCGGAGGCTACACCCGCACCAGAGGGAGGGGCTGAAAGTGCTGTGG
GAGTGTCTGGCCGGGCGAGGCGGGTGAGGCCATTTGATTAGAGGCCAGTC
GTGTACAGTATGATATGCGGCTTGTTCGCGCCGTGGTGTTTCCATTGCGG
ACGTTTGCGGGCGAGTGCGCGGGCGAGCAATGGAGAGGCGAGGGCGGGGG
GGCGGGGAATGGGATGCTGCCGCAAGTATGCCGGGTATCTCGTACTCTGT
CGGTGTTGATGCGGCGCTCCCTACCCTACAGGAGCGATTTCGTTTGAGTG
GTTGGCGGAGAGGCGGTGATGAGTGAGCCCTTCTCTCCGGCCGTTCGTGT
GCTGTCGGCGCTGGCCTGCTGTACCACCCACCAGCGGCATCTACCGCTCT
CCCTTGATCGGGGGAGGTGGGTTTCACCATCTAACGCAACTATCTATTTC
TCCCCCATTTTGTGGACCTTGCCCCCCTCCCACCCCCCCAACCCGGCGCT
CTCGGCAAGCAGGTACGAGGGCCGGGGGGCTATACTCGCGGACGAAATGG
GACTCGGGAAGACTGCGACGGCCATTGCGTTATGCACGTGTGTGCTGCGC
CACCGCAGGGCGGAGTGCCGCAAGGCCGTCGTGGTGTGCCCTTCTTCCCT
CGTGAAAAACTGGGCGAATGAGGTGACTCAGCCGACGGGCAGGCAGATAG
GCAGCCGTGCCCCGCATTCGCTGAAACTTCTCCGAGTTTGCTGTAGGGCG
GGCGACGACCTTATGCTCGTTGTTGTGCGATGCGGTTGCCGTCAGGCTGC
CAACGCAAGACCGCGAGAGCCCCCCCCCTCCCTCAACTCCTCGCCGCGAG
GAAGGTTTGCCGATTAGTTCGCGTACACCGCTCGCTTTTTCGTTCAGACG
AGATGGTCGACCTCCTGTGTTGGTTTGTCGAGTGTCTGTCATCTGTCTAG
AGCTTCGCCACTCTCTTGGGTGCTCGATGTCTCGTTTTCGACCGGGGATG
ACAAGCTCAGGAGATTGCAGTAGGTCCTACTCCCAACGGTAACATGAGCA
TTGAGTTTCTTGTTCTGTTCTGTACGACGTGGAGCTCTGCTGGGTTTTCT
CGCCCGAATGGAAATTCCGGCCGACCCTCGTTCTCAATGGGGAGGGGAGG
GGAGGGCAGGGAGGGCAGTAGATGCACTGAAAGGTGTTATTACGGGGGTC
CATAGTAAATAGGACCTATGGTATACGCAAAAAACTATATGTTTCCCTAT
TTTTACTAACAATATTTGGTCCTATTTACTATGGTCTCCCGTAATAGGAG
AGGGGGGATTGCGACTGGAGATGAAAGAGGCGAGTGGAAAAGCACTGACG
CATTGGTCCACGGGAATACGGCTGATTGGCCAGACACCTGTCACCAGTGC
AGACAGCGATGGCTCATTGCCAGGTGCTGAGCCCTTCGGCGGTACTCCGA
TCGACCAACCCGTTATTGGGTTTTACGCTTGCCTCTTCCATCTGCAGCCG
CCCCCCCACTGCTCTTCAGTGTGATAACGAGTAGAAACGGTGCTCCGTCT
CGATAGGGATGCGTGGTTATTATTACGGGGGTACATAGTTAATAGGACCT
ATGGTATACATCACAACCTATATATTTACCTATTTTTACTAACAAAATTT
GGTCCCGTTGACTATGGTCCCCCGTAATAGTCAAATAACGAAGGCAAGCA
ACAAATGAGTACCCCACCCCCCCACCCCCGTCCCCCGCGGTTTTCAATCT
CAAAGCAGCAGCGCTCAAGCCGCTCTGCGCCGCGTCTCCTTCGTTTCGTG
CGATCGTCTGAGCATCGGGCCATCAGGCATTTGTTATACAGCTCAACTCA
TCCTTCCGCGCCACTGCCCCCTTCCGCAACCGACCCCACGCCGTTCGGCC
TCGCCCCGCACGCACGCTCTCCGCTCTCCGCAGTTCCGCAAGTGGTGCCC
TCTCGGGGGGGGCGCCGTCGCGGCCGACCAGGCGGGGTCTGCGGCCGCCC
AGCTCGTGGCGGACTTCAAGATAGGAGCACCCGCGCGCTACCCCATCCTC
GTTATCAGCTACGAGCTCTACAGGTGACTTTTTTTTTTGTGTGGCCTTGG
GGCGCGGTGGCTGGTCCCGCAAGCCGACGACGAGCGCATGGAAGGTGTCA
GAGTGATCAGGTCGTGCTGCACATACTTTCCTTGCCTGCAACGGTGCGGT
TAGTCTACTGAGGGGTTCCTCGCTTTGCTTTGAGCTCCGAACGGCGCGGC
ACTGCGAGATCAACCGAGGGCGCGTACGCATGCGAGTCTGCTGCCCCAAG
CGGGTCGAGCGGTGGTTCAGTCCCGCAATGCTCACACCGCGTATATGCTG
CACGGGTTTGTTTCCTGCGGGAAGGCAACCGGGGCTCGATGAAAACACTC
GTTCCTCCCTCGTCGCTCTGCCGCATGTTTGCACCTGCACAATCTCGTGC
TGTGCCCCGGATGAATGTGTTTATTTGCGATTTTTCTTTTCAAATTCCCA
CACAAATAGGCTATAGCGGTCGCAACCGCAACGGAATGGATGAAAAACAA
ATTCGTGCAGCAGTACAATCTAGAGTAGCACTCCCCCGCCCCTCCCCCCT
GTTGCGTCAGAGGAAGCGAAGCTCCGAAGCGATAGGGGTGAAACGATATC
CTAGCCTCCGTACGTATCTCGCACGGCACGGAACCCCCTCCCCGAATACG
TGACAACGCTCTCGACGTGTGCTACGATAGAAGTACAGCACGTACTACTA
GCACCTTTTTTCTTTTCGCCTTATGAGGCAATATTTGTGACTGACGGACC
TACTCAACTGAGGAACTACCGGGTAATTACCCGGTAATATATCCCATTTG
TGTTGCACGGTATTTTTCGTTAGACACCTAGGCTATGGGTAGTGTTCACC
GGGTTAGGCTTACGAAATTATCAAAAGGCGTTGTTTTGGGGGGGTGATAT
ATGGAGTGAGGAGGCTCAGAAAACGTTTCGGTGCTGCTCCTATCATGAGC
GCTCGTCCTTCTTGACTAGAGTTCGCCAGCGCGGTGCTTGTGTGAGATCT
TTCTGTGCGCCACTGACTCGCTAGCGGGGGGGGGGGCGGGGGTATGCCCA
ACTCTGCGCGCGACAGGAATCACGGCAAGATCGTGAACGCCACGGAGGGA
CTGGGCCTCCTGATCGCGGACGAGGGACACCGGCTGAAAAATTCTTCGGA
GACGAAGACGACCAGAGCTCTCAAAGCCTGTCCCGCCGTGATGCGCCTTG
TCCTGGTGAGGTGTTAGCGGCGAGGGTGCGCTCGATTGGTACAGTAGTAG
CCACAGCAAAGGTTTTGAACGGGAGCCGACAGGCCACGTTATTTCTGAGG
AGACACTCGATTGCCGAATGCGGGGTAGAGCCCGTCCTTTTGGCCGCTTC
CCGACAAGGGTGCCAGGAGGCGACAGTTTCGGGCGTCGTTGGTCACACCA
CTTGGAACTCCTACACTAAAGCTAGTATGATAAGTCCTGACGGTCGTCCG
TCAGAGGTTGAAACTGTCGTCTCTTCACATCCGACACGCGGGCCTCGGTA
GAGCTACCACCCTTTCTCTCCCCACTTTTCTGCTGACGGTGTCGACGGAG
TACCTTTTCGTGACACACTTCGTACTACGGCAGGGGAATCATACGAGCAC
TCTCAAACTTTGTTTATTTCCTTCAGCTGCCTCCCCCCGCCCTGCCTTGT
CGGGGCCGGTCGATCCACGGCATAGTCACACTGGAACAACGCGAAATACT
CACCTCTCAATCGTCCCACGCCTGTGCTTGGCGGCAGCCCTCGTCTGTCT
CTCTCCGCGCCAAACAAGTACTGACATTTTCCTCTTTCTATCTGTTAAGA
GGTCAGGTCGAAATACTCCATAGAGGTACCTATTGGTCGACGCTATCGCC
CCACTTCACCGTACCTGCACCACAATTCACTACTTCAACGTTCATACGTA
CACCGCAAATCCATGACTTCGTGTTTCCCGTTGTTGGCGCGTGCAGACGG
GCACTCCGATGCAGAACGACCTGGACGAGTTTTTCGCGGTGGCGGACTTC
GCCAACCCTGGTGTGCTAGGCACCCTCAAGGGCTTCCGGTCCAGGTAATC
CGCATTTCGGAGTGTAATGGCCTGGGCGACCCATCCACACACCCATCCAT
CCACCCACCCACTGACCCCCACACCCACCCACCCACCCACCCATCCCCAC
CCCCACCCATTCATCCACCCGTCCACTCACGCACCCACCGACTGACACCC
CCACCCACCAACCCATGCACCCACCCACCCACCCCGAAGAGAGGGGGGGT
CGGCTCGGTTCAGTGGGAAGGCGTCAAACGGATTGCGCCAACTGTAGTGC
GTAGCAATGCATCACCGACGTTTACCGCCCGGTCAAACGCGCTGACCGCT
CCCATTTCTGCGTCTATCAACACGAAGTCTACCTTTCCGAAGACGTTACC
ACGTGGTCATGAATATTTTGAGACACTACGCAATGATAAGGGTATTTTCA
TATCTCGGTCGGCTACAGCAACTGTTACAGTAGCTCTATGCTCTTCCAAA
TTTGAGGCGTTCATGCACCTATCTCCTTCCTAGAATATTGAAGACGCCCT
GTCCCCACCCCCGCCCCCTCCCCGATCGAACCCTCGCCTTATATGCCTAT
AGGTACACCCGTCCAATCAAGGCGGCGTGGGACCGCGAGGCGGGCGAGGA
TGTTGCGGAGCTGTCGGCGGAGAGAACGCGCGAGCTCGGGGAGGTA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig7791:5399..11894+

>mRNA_M-pyrifera_M_contig7791.18324.1 ID=mRNA_M-pyrifera_M_contig7791.18324.1|Name=mRNA_M-pyrifera_M_contig7791.18324.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=3156bp|location=Sequence derived from alignment at M-pyrifera_M_contig7791:5399..11894+ (Macrocystis pyrifera P11B4 male)
ATGGAGTTCACCTGCCTGTGGTCGAAGGACGCCCACCACAAGAAGAGGAA
GAGGTGGACGGACGGCATCGCGCGGTTTTCGCCTGCTACCGGGTTGCTCA
GCGTGTGGGACCAGATGGAGTTCACCTGCCTGTGGTCGAAGGACGCCCAC
CACAAGAAGAGGAAGAGGTGGACGGACGGCATCGCGCGGTTTTCGCCTGC
TACCGGGTTGCTCAGCGTGTGGGACCAGGACGATTCCGCGAAGATTTCCT
CCATGCGCCTGAAGCCCGACGAGGCCGCCGCGATTCTGCAAGAAGATGGC
GGTGAGGCACGAATAGGCGGCGTCAGCATCCAGATCATGGCGAACATCAG
CCAGCGACGGCAGCCGCAGCAGCAGCAACAACAACAACAGCAACAACAAA
CTTCTCCCCCGCACGGGGGAGGCAAGACCAGCACCTTCGCCATAGGACGA
TTCCGCGAAGATTTCCTCCATGCGCCTGAAGCCCGACGAGGCCGCCGCGA
TTCTGCAAGAAGATGGCGGTGAGGCACGAATAGGCGGCGTCAGCATCCAG
ATCATGGCGAACATCAGCCAGCGACGGCAGCCGCAGCAGCAGCAACAACA
ACAACAGCAACAACAAACTTCTCCCCCGCACGGGGGAGGCAAGACCAGCA
CCTTCGCCATAGCATCACCGCCGCCGCCGCGGCGCGGTTTCGCGAACGGC
TCTGACCTTGCTCCGCCTCCGCCGCCGCCCGAAACTGCCGGCGAGGGCAC
ACCCGCTTCCGGCGGTTCTTCCTTTCCCAGCGCTCGACAGACCGCCGCCG
CCGCCATCGCCACCGTCGCCACCACCGTGGGCGCGGCCGGATCCAGCGTT
GCTAACGGAAATCGAGTAGGGCTCGGGGGCGCCGGGAGGGGCAAGGGCGG
GGCGCGGCGATTCCACGCCCCTCGGCTTTCGAGAGAGGCGGCGCCATCGA
GCGTAAACACCGGCCCGCGCCCCGCGAGCGGGACGAGATTGGTCGCCGCT
CGTGACCAGCAAGGAGCGAGAAAGCTCGGGGCAGAGGGTGGAGGAGCACC
GTGCGGCCGGGCGTCGGCCGGCGGTGGCAGAGGCGGCGGAACCGATGACG
TCGGTGGTGGTGGCGGTGCCTCGCGCCATCACCGCCGCCGCCGCGGCGCG
GTTTCGCGAACGGCTCTGACCTTGCTCCGCCTCCGCCGCCGCCCGAAACT
GCCGGCGAGGGCACACCCGCTTCCGGCGGTTCTTCCTTTCCCAGCGCTCG
ACAGACCGCCGCCGCCGCCATCGCCACCGTCGCCACCACCGTGGGCGCGG
CCGGATCCAGCGTTGCTAACGGAAATCGAGTAGGGCTCGGGGGCGCCGGG
AGGGGCAAGGGCGGGGCGCGGCGATTCCACGCCCCTCGGCTTTCGAGAGA
GGCGGCGCCATCGAGCGTAAACACCGGCCCGCGCCCCGCGAGCGGGACGA
GATTGGTCGCCGCTCGTGACCAGCAAGGAGCGAGAAAGCTCGGGGCAGAG
GGTGGAGGAGCACCGTGCGGCCGGGCGTCGGCCGGCGGTGGCAGAGGCGG
CGGAACCGATGACGTCGGTGGTGGTGGCGGTGCCTCGCGCGCGGCGGTGA
ATCGGGAAGACCTAGTTCTGGAGTGGAACGGGGAGAACCCGCCGCGGCCG
CTCTTGGCCGGCGCTTCCCTTGCGCGGAGGCTACACCCGCACCAGAGGGA
GGGGCTGAAAGTGCTGTGGGAGTGTCTGGCCGGGCGAGGCGGGCGGCGGT
GAATCGGGAAGACCTAGTTCTGGAGTGGAACGGGGAGAACCCGCCGCGGC
CGCTCTTGGCCGGCGCTTCCCTTGCGCGGAGGCTACACCCGCACCAGAGG
GAGGGGCTGAAAGTGCTGTGGGAGTGTCTGGCCGGGCGAGGCGGGTACGA
GGGCCGGGGGGCTATACTCGCGGACGAAATGGGACTCGGGAAGACTGCGA
CGGCCATTGCGTTATGCACGTGTGTGCTGCGCCACCGCAGGGCGGAGTGC
CGCAAGGCCGTCGTGGTGTGCCCTTCTTCCCTCGTGAAAAACTGGGCGAA
TGAGGTACGAGGGCCGGGGGGCTATACTCGCGGACGAAATGGGACTCGGG
AAGACTGCGACGGCCATTGCGTTATGCACGTGTGTGCTGCGCCACCGCAG
GGCGGAGTGCCGCAAGGCCGTCGTGGTGTGCCCTTCTTCCCTCGTGAAAA
ACTGGGCGAATGAGTTCCGCAAGTGGTGCCCTCTCGGGGGGGGCGCCGTC
GCGGCCGACCAGGCGGGGTCTGCGGCCGCCCAGCTCGTGGCGGACTTCAA
GATAGGAGCACCCGCGCGCTACCCCATCCTCGTTATCAGCTACGAGCTCT
ACAGTTCCGCAAGTGGTGCCCTCTCGGGGGGGGCGCCGTCGCGGCCGACC
AGGCGGGGTCTGCGGCCGCCCAGCTCGTGGCGGACTTCAAGATAGGAGCA
CCCGCGCGCTACCCCATCCTCGTTATCAGCTACGAGCTCTACAGGAATCA
CGGCAAGATCGTGAACGCCACGGAGGGACTGGGCCTCCTGATCGCGGACG
AGGGACACCGGCTGAAAAATTCTTCGGAGACGAAGACGACCAGAGCTCTC
AAAGCCTGTCCCGCCGTGATGCGCCTTGTCCTGGAATCACGGCAAGATCG
TGAACGCCACGGAGGGACTGGGCCTCCTGATCGCGGACGAGGGACACCGG
CTGAAAAATTCTTCGGAGACGAAGACGACCAGAGCTCTCAAAGCCTGTCC
CGCCGTGATGCGCCTTGTCCTGACGGGCACTCCGATGCAGAACGACCTGG
ACGAGTTTTTCGCGGTGGCGGACTTCGCCAACCCTGGTGTGCTAGGCACC
CTCAAGGGCTTCCGGTCCAGACGGGCACTCCGATGCAGAACGACCTGGAC
GAGTTTTTCGCGGTGGCGGACTTCGCCAACCCTGGTGTGCTAGGCACCCT
CAAGGGCTTCCGGTCCAGGTACACCCGTCCAATCAAGGCGGCGTGGGACC
GCGAGGCGGGCGAGGATGTTGCGGAGCTGTCGGCGGAGAGAACGCGCGAG
CTCGGGGAGGTAGTACACCCGTCCAATCAAGGCGGCGTGGGACCGCGAGG
CGGGCGAGGATGTTGCGGAGCTGTCGGCGGAGAGAACGCGCGAGCTCGGG
GAGGTA
back to top