mRNA_M-pyrifera_M_contig779.18322.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig779.18322.1
Unique NamemRNA_M-pyrifera_M_contig779.18322.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig779.18322.1 vs. uniprot
Match: D7FQT5_ECTSI (SRP101, alpha subunit of the signal recognition particle receptor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQT5_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 6.310e-30
Identity = 68/84 (80.95%), Postives = 73/84 (86.90%), Query Frame = 1 
Query:    1 SQVGGGKKEKREKKGTVWHDGSGGGKQLGQKAKEALDRSKREEDGAGDDALMAEMRSTYMPDKGEMPEWDEPDSDLDDNDDILD 252
            SQ GGGKKEK  KKGTVWHDGSG GKQLG+KAKEALDRSKREE  AGD+ LMAEMRSTYMP+ GE  EWDEP+SDLD+ DDILD
Sbjct:  182 SQAGGGKKEK--KKGTVWHDGSGSGKQLGEKAKEALDRSKREEGDAGDEVLMAEMRSTYMPEDGETAEWDEPESDLDE-DDILD 262
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BLAST of mRNA_M-pyrifera_M_contig779.18322.1 vs. uniprot
Match: A0A7S2S5V8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S5V8_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 2.390e-7
Identity = 30/71 (42.25%), Postives = 49/71 (69.01%), Query Frame = 1 
Query:   16 GKKEKREKKGTVWHDGSGGGKQLGQKAKEALDRSKREEDGAGDDALMAEMRSTYMPDKGEMPEWDEPDSDL 228
            GK +K+ K+ TVW DGS   K+L +KA EALDRSK+ E  + +D ++ E +  Y+P+ GE+ +W++ ++ L
Sbjct:  244 GKTKKKGKQATVWRDGSSN-KKLSKKAAEALDRSKKPEGASSEDLMLKEYQDKYLPESGEVADWEKEETPL 313
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BLAST of mRNA_M-pyrifera_M_contig779.18322.1 vs. uniprot
Match: A0A7S2C2X3_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C2X3_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 1.550e-6
Identity = 29/59 (49.15%), Postives = 43/59 (72.88%), Query Frame = 1 
Query:   37 KKGTVWHDGSGGGKQLGQKAKEALDRSKREEDGAGDDALMAEMRSTYMPDKGEMPEWDE 213
            KK T WHDG+   K+L +K KEAL+RS ++ DG  DDA +AE ++ ++P+ GE+ EW+E
Sbjct:  199 KKMTQWHDGTA--KKLTKKQKEALNRSAKDFDGNEDDAQLAEYQAKFLPEAGEVAEWEE 255
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig779.18322.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FQT5_ECTSI6.310e-3080.95SRP101, alpha subunit of the signal recognition pa... [more]
A0A7S2S5V8_9STRA2.390e-742.25Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2C2X3_9STRA1.550e-649.15Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig779contigM-pyrifera_M_contig779:28643..31384 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score122.9
Seed ortholog evalue8.4e-26
Seed eggNOG ortholog2880.D7FQT5
Preferred nameSRPR
KEGG koko:K06640,ko:K13431,ko:K21989
KEGG TC3.A.5.8
KEGG Pathwayko03060,ko03460,ko04110,ko04115,ko04214,ko04218,ko05165,ko05166,map03060,map03460,map04110,map04115,map04214,map04218,map05165,map05166
KEGG ModuleM00691
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0000902,GO:0000904,GO:0001882,GO:0001883,GO:0002791,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0003924,GO:0005047,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005785,GO:0005789,GO:0005791,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006810,GO:0006886,GO:0006950,GO:0006986,GO:0007154,GO:0007165,GO:0007275,GO:0007399,GO:0007409,GO:0008104,GO:0008150,GO:0009653,GO:0009987,GO:0010033,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0022008,GO:0023052,GO:0030030,GO:0030154,GO:0030182,GO:0030867,GO:0030968,GO:0031090,GO:0031175,GO:0031984,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032879,GO:0032880,GO:0032989,GO:0032990,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034613,GO:0034620,GO:0034976,GO:0035639,GO:0035966,GO:0035967,GO:0036094,GO:0036498,GO:0042175,GO:0042221,GO:0042886,GO:0043021,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045047,GO:0045184,GO:0046907,GO:0048468,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050708,GO:0050789,GO:0050794,GO:0050896,GO:0051046,GO:0051049,GO:0051179,GO:0051223,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0061564,GO:0065007,GO:0070201,GO:0070727,GO:0070887,GO:0070972,GO:0071310,GO:0071702,GO:0071705,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0090087,GO:0090150,GO:0097159,GO:0097367,GO:0098588,GO:0098796,GO:0098827,GO:0120036,GO:0120039,GO:1901265,GO:1901363,GO:1903530
EggNOG free text desc.signal recognition particle binding
EggNOG OGsCOG0552@1,KOG0781@2759
Ec32 ortholog descriptionSignal recognition particle, SRP54 subunit, helical bundle
Ec32 orthologEc-16_000650.1
EC2.7.11.1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko02000,ko02044,ko03400
Exons3
Model size293
Cds size291
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig779.18322.1prot_M-pyrifera_M_contig779.18322.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig779 28645..31384 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816680.2200096-CDS-M-pyrifera_M_contig779:28644..287401622816680.2200096-CDS-M-pyrifera_M_contig779:28644..28740Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig779 28645..28740 -
1692278115.7205539-CDS-M-pyrifera_M_contig779:28644..287401692278115.7205539-CDS-M-pyrifera_M_contig779:28644..28740Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig779 28645..28740 -
1622816680.2325277-CDS-M-pyrifera_M_contig779:30181..302561622816680.2325277-CDS-M-pyrifera_M_contig779:30181..30256Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig779 30182..30256 -
1692278115.7327063-CDS-M-pyrifera_M_contig779:30181..302561692278115.7327063-CDS-M-pyrifera_M_contig779:30181..30256Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig779 30182..30256 -
1622816680.2454789-CDS-M-pyrifera_M_contig779:31264..313841622816680.2454789-CDS-M-pyrifera_M_contig779:31264..31384Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig779 31265..31384 -
1692278115.7442312-CDS-M-pyrifera_M_contig779:31264..313841692278115.7442312-CDS-M-pyrifera_M_contig779:31264..31384Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig779 31265..31384 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig779.18322.1

>prot_M-pyrifera_M_contig779.18322.1 ID=prot_M-pyrifera_M_contig779.18322.1|Name=mRNA_M-pyrifera_M_contig779.18322.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=97bp
SQVGGGKKEKREKKGTVWHDGSGGGKQLGQKAKEALDRSKREEDGAGDDA
LMAEMRSTYMPDKGEMPEWDEPDSDLDDNDDILDLDDGDEAVEADNS
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mRNA from alignment at M-pyrifera_M_contig779:28643..31384-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig779.18322.1 ID=mRNA_M-pyrifera_M_contig779.18322.1|Name=mRNA_M-pyrifera_M_contig779.18322.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2742bp|location=Sequence derived from alignment at M-pyrifera_M_contig779:28643..31384- (Macrocystis pyrifera P11B4 male)
TCGCAAGTAGGTGGAGGTAAGAAGGAGAAGAGAGAGAAGAAGGGGACGGT
GTGGCACGACGGCAGCGGAGGCGGAAAGCAGCTCGGACAGAAGGCGAAAG
AAGCGCTCGACAGATCCAAGGTACTTTTAGTATTTATACATACACTTAAC
AATGATACTGCTCTATAAACGTGTATAATACGTATTCGCTCGCCGTTCGC
GTTTGTTTTCTGACCGTTAACCTCTCGCGGGCTGGCGGTTCAGTTTTCAC
GAGCTGGTCGTTAACATCTCACGGACTGGTCGTTAGTTTTTTTTAGGGAG
ACGACGCACTTCGTTACACAAGGAAGTTTTAGTTTCATTTTTTTAAACGA
TGGTAAGCTCGGTCTTATGTTGCTTCATCTCGCCCTTGCTCCGCGCACTT
GCTGGGACCGCGCTCCACCACCGTATCACCAGCTTCATACACCTGCTCGA
AGGGCGCCTACTAGCCGAGTAGCCACGCTGTCATTGCTCTATCTGCTGTG
CACATGCGGTCTCGACAGCTTCTGCTGTTGGCACCCGGTCTGCTCAAAGG
ATGTACCGGTACAATTTGCTTGTTAGCGGAGGCGTAGCGGGTTGATTGCT
GTACGTAGTGGGCAGCAGTGAGTATCATAGCGTGTACAGCAGTCTCTGGT
CGCCGATTGCGCCATGTGTACGTGTGGCAGTTGTTTGTACGTCAAGTGCG
TTTCGCGTTTTTGGAGATTGCCGAGATGATGCTGTCTTGTACTTTACAGC
TGCAGTAGTTGCGTGATCCCGCTCAGGTGAAACCACACGAATGCTGTCGT
AGCGTGTTGTTGCATGGCCACAGCAGCACAGTACAGTACACGAGCATTTT
TTTAGATACATGGCAGCACGCCATGCCTCGCGAACAGCTTCCTGGTAAAC
ACTGCACCTATAGATCACGCCCGCGTTCGATATGCCGATGCGTTAAACCC
AACGCATTAAACTCAACGCAAGCCATGTGGAAAGTGGCAACCATGTCAGA
GTCACCCCGTCCTCACCCCCACACGCTCCCCTCACCCTCCCCACACCCTC
CCCTCACCCTCCCCTCACCCTGTTTTTGGCATTCCTCCTATGGTGTGGTG
TTGTTGTGGTGTTTTGTTGGCAAAAAAGCGAGAAGAGGACGGTGCGGGGG
ATGACGCGCTTATGGCCGAGATGCGCTCTACCTACATGCCGGACAAGGGG
GAGGTGAGTCACAAGACGCGCCTCACCGTGTAGCGGCGAAATGGCCTCAC
GCGTTTTGCTCCGGCTCGTGCATCGCGATGACAGCATTTTGCGGATTTGG
CATGCACGATGGGGATTGTTTACCCGTCGTGGCACTTACTCCTGTACAGC
TGCGATTGCGCAACACTTCTACGGCCAAAGAGTTGCACCTTGAAGGTGAA
TATTGCGAGCGTATCATATCGGGTTGCGAGCATATCACATCGGATTGCGA
AGTTGTGAAACGCTCTCGCCATCGCGTGTGAGCGACGCTCGGGAATAACT
CCTTTGAGAGCAAAAGAAACCACAAGTCTCAATTGTTTCTCTTACCGGCG
TTATTTGGCCGTTCGGCTGTCCTAAATACCGCTGTTCCATGACTCGTTCC
TTTGCCAATGGGGACGAGTATTCTCGCCTCTGAATAGACCCGCCGTCAGA
TCCCACCTTGGTCCATCATTCCTGTTGGCACTGCACCTTTTAGGTCTCTC
TATCTGCAAGCAAAAATGCCTCCATACGTGAATGCACTAGGGGGTTGACG
CACTGCTCTACTGCATGCATAGTATGTAGGATAAACTATTGAAAACAGAG
AAAATACACACCAGATACCTGTTTGTTTGTTTTTGGCTACTGTGGGGTTG
CCGTGTTGACCCTTTTTCAAGCCCAAAAATGATCCTACTCTAGTCCAGAG
TGCTTCGTCCCCAAAACGAAGACCCAATGGCGAAGGGGGTAGGGGTTAAG
TGTCAGACGTATTCACCGCGTAGTGTAGTGTAACACTACCCCAAACCCGA
ACCCCCACCCAGTAATCCATGTAACCTCAACCCTGACCCTATACTGAAAG
ATGCCAGCAGTCAGGAGGTAGCATTTTCGCTCCTTGACAGACTGCAGATT
TGCCTTAATTTTCCTCAACTGACTCCAAAGTACTAGGATTTAGTGTGCAA
CACTCCGCCCTTCACCCTTGACAGCGCACGTTTCTCCTTGCTTGACGTGT
TTCCTGACAAGTTTGCTACTTGTGGGAACGTCGTCGGAATGTTTCCGTCA
CCAACCAAAACCTCAAAAATGTACGTGCGCCATTTGGATTTTACTCGCTG
ACCGTCGGGTTTTTTTCCCCCCCCATTTTCAGTATTCATCACACATCAAA
GTATAGATCACATCAAAGCTTGCAAATATGAGTTTCTAGGAAAAATTCGA
TATCACAGCTTCAGTTCATTTTTATTTTTTTCGTAACCTTGCGCCCGGAA
ATAACCTAGGCGGATGGTGATTGGAACTGTACTGCCATTGTTTGACAAGA
AACGCCTGTGGATCCTAATCCTACGATGCCAGGCACTCGCTCCTTGCCAA
CGTATTCGCCTCCGTGTCCCACACGACTACAAGTGATGTATATTCATGTA
CCCATGTTCCGGCGTGCCTGCATTGTGATATCGTTATCATACAGATGCCG
GAGTGGGACGAACCAGATTCAGACCTCGACGACAACGATGACATCTTGGA
TTTGGATGACGGAGACGAGGCAGTAGAGGCCGATAATTCGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig779:28643..31384-

>mRNA_M-pyrifera_M_contig779.18322.1 ID=mRNA_M-pyrifera_M_contig779.18322.1|Name=mRNA_M-pyrifera_M_contig779.18322.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=582bp|location=Sequence derived from alignment at M-pyrifera_M_contig779:28643..31384- (Macrocystis pyrifera P11B4 male)
TCGCAAGTAGGTGGAGGTAAGAAGGAGAAGAGAGAGAAGAAGGGGACGGT
GTGGCACGACGGCAGCGGAGGCGGAAAGCAGCTCGGACAGAAGGCGAAAG
AAGCGCTCGACAGATCCAAGTCGCAAGTAGGTGGAGGTAAGAAGGAGAAG
AGAGAGAAGAAGGGGACGGTGTGGCACGACGGCAGCGGAGGCGGAAAGCA
GCTCGGACAGAAGGCGAAAGAAGCGCTCGACAGATCCAAGCGAGAAGAGG
ACGGTGCGGGGGATGACGCGCTTATGGCCGAGATGCGCTCTACCTACATG
CCGGACAAGGGGGAGCGAGAAGAGGACGGTGCGGGGGATGACGCGCTTAT
GGCCGAGATGCGCTCTACCTACATGCCGGACAAGGGGGAGATGCCGGAGT
GGGACGAACCAGATTCAGACCTCGACGACAACGATGACATCTTGGATTTG
GATGACGGAGACGAGGCAGTAGAGGCCGATAATTCGATGCCGGAGTGGGA
CGAACCAGATTCAGACCTCGACGACAACGATGACATCTTGGATTTGGATG
ACGGAGACGAGGCAGTAGAGGCCGATAATTCG
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