mRNA_M-pyrifera_M_contig779.18321.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig779.18321.1
Unique NamemRNA_M-pyrifera_M_contig779.18321.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig779.18321.1 vs. uniprot
Match: D7FQT5_ECTSI (SRP101, alpha subunit of the signal recognition particle receptor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQT5_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 1.080e-18
Identity = 43/45 (95.56%), Postives = 44/45 (97.78%), Query Frame = 1 
Query:    1 QNNEPLMRALSKLINENEPDLVLFVGEALVGNDGVNQLQMFNQVL 135
            QNNEPLMRALSKLINENEP+LVLFVGEALVGNDGVNQLQMFNQ L
Sbjct:  478 QNNEPLMRALSKLINENEPELVLFVGEALVGNDGVNQLQMFNQAL 522
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BLAST of mRNA_M-pyrifera_M_contig779.18321.1 vs. uniprot
Match: A0A5K1FVJ2_9MAGN (Uncharacterized protein (Fragment) n=1 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K1FVJ2_9MAGN)

HSP 1 Score: 73.2 bits (178), Expect = 7.240e-16
Identity = 37/43 (86.05%), Postives = 38/43 (88.37%), Query Frame = 1 
Query:    7 NEPLMRALSKLINENEPDLVLFVGEALVGNDGVNQLQMFNQVL 135
            NEPLMRALSKLIN N PDLVLFVGEALVGND V+QL  FNQVL
Sbjct:    2 NEPLMRALSKLINLNSPDLVLFVGEALVGNDAVDQLSKFNQVL 44
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BLAST of mRNA_M-pyrifera_M_contig779.18321.1 vs. uniprot
Match: A0A176WI44_MARPO (SRP54 domain-containing protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176WI44_MARPO)

HSP 1 Score: 78.6 bits (192), Expect = 1.420e-15
Identity = 42/52 (80.77%), Postives = 44/52 (84.62%), Query Frame = 1 
Query:    1 QNNEPLMRALSKLINENEPDLVLFVGEALVGNDGVNQLQMFNQVLHTDFAVT 156
            Q+NEPLMRALSKLIN NEPDLVLFVGEALVGNDGV+QL  FNQ L  D A T
Sbjct:  530 QDNEPLMRALSKLINVNEPDLVLFVGEALVGNDGVDQLMKFNQSL-ADMATT 580
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BLAST of mRNA_M-pyrifera_M_contig779.18321.1 vs. uniprot
Match: A0A444DVV9_ENSVE (Uncharacterized protein n=1 Tax=Ensete ventricosum TaxID=4639 RepID=A0A444DVV9_ENSVE)

HSP 1 Score: 74.7 bits (182), Expect = 1.850e-15
Identity = 40/50 (80.00%), Postives = 43/50 (86.00%), Query Frame = 1 
Query:    1 QNNEPLMRALSKLINENEPDLVLFVGEALVGNDGVNQLQMFNQVLHTDFA 150
            Q+NEPLMRALSKLIN N PDLVLFVGEALVGND V+QL  FNQV + DFA
Sbjct:  110 QDNEPLMRALSKLINLNNPDLVLFVGEALVGNDAVDQLTKFNQVRY-DFA 158
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BLAST of mRNA_M-pyrifera_M_contig779.18321.1 vs. uniprot
Match: UPI00053B925D (signal recognition particle receptor subunit alpha homolog n=1 Tax=Camelina sativa TaxID=90675 RepID=UPI00053B925D)

HSP 1 Score: 74.3 bits (181), Expect = 5.540e-15
Identity = 41/58 (70.69%), Postives = 47/58 (81.03%), Query Frame = 1 
Query:    1 QNNEPLMRALSKLINENEPDLVLFVGEALVGNDGVNQLQMFNQVLHTDFAVTINEGNP 174
            Q+NEPLMRALSKLIN N+PDLVLFVGEALVGND V+QL  FNQ L +D + +   GNP
Sbjct:   85 QDNEPLMRALSKLINLNQPDLVLFVGEALVGNDAVDQLSKFNQKL-SDLSTS---GNP 138
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BLAST of mRNA_M-pyrifera_M_contig779.18321.1 vs. uniprot
Match: A0A0P1B7H3_PLAHL (Signal recognition particle receptor subunit alpha n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B7H3_PLAHL)

HSP 1 Score: 76.3 bits (186), Expect = 9.210e-15
Identity = 35/45 (77.78%), Postives = 43/45 (95.56%), Query Frame = 1 
Query:    1 QNNEPLMRALSKLINENEPDLVLFVGEALVGNDGVNQLQMFNQVL 135
            QNNEPLMRAL+KL+++NEPDLVLFVGEALVGNDG++QL MF++ L
Sbjct:  491 QNNEPLMRALAKLVSKNEPDLVLFVGEALVGNDGIDQLSMFDRAL 535
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BLAST of mRNA_M-pyrifera_M_contig779.18321.1 vs. uniprot
Match: A0A1Y1IH64_KLENI (Signal recognition particle receptor n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IH64_KLENI)

HSP 1 Score: 76.3 bits (186), Expect = 9.220e-15
Identity = 37/45 (82.22%), Postives = 42/45 (93.33%), Query Frame = 1 
Query:    1 QNNEPLMRALSKLINENEPDLVLFVGEALVGNDGVNQLQMFNQVL 135
            Q+NEPLMR+LSKLIN+N+PDLVLFVGEALVGNDGV+QL  FNQ L
Sbjct:  523 QDNEPLMRSLSKLINQNQPDLVLFVGEALVGNDGVDQLMKFNQRL 567
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BLAST of mRNA_M-pyrifera_M_contig779.18321.1 vs. uniprot
Match: A0A4U5LVN4_STECR (SRP54 domain-containing protein n=1 Tax=Steinernema carpocapsae TaxID=34508 RepID=A0A4U5LVN4_STECR)

HSP 1 Score: 76.3 bits (186), Expect = 9.220e-15
Identity = 39/50 (78.00%), Postives = 44/50 (88.00%), Query Frame = 1 
Query:    1 QNNEPLMRALSKLINENEPDLVLFVGEALVGNDGVNQLQMFNQVL--HTD 144
            QNNEPLMRALSKLIN+N+PDLVLFVGEALVGN+ V+QL  FNQ L  HT+
Sbjct:  532 QNNEPLMRALSKLINDNKPDLVLFVGEALVGNEAVDQLVKFNQALADHTE 581
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BLAST of mRNA_M-pyrifera_M_contig779.18321.1 vs. uniprot
Match: A0A2K1IZA8_PHYPA (SRP54 domain-containing protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1IZA8_PHYPA)

HSP 1 Score: 76.3 bits (186), Expect = 9.230e-15
Identity = 38/45 (84.44%), Postives = 41/45 (91.11%), Query Frame = 1 
Query:    1 QNNEPLMRALSKLINENEPDLVLFVGEALVGNDGVNQLQMFNQVL 135
            Q+NEPLMRALSKLIN N+PDLVLFVGEALVGNDGV+QL  FNQ L
Sbjct:  539 QDNEPLMRALSKLINMNDPDLVLFVGEALVGNDGVHQLTQFNQKL 583
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BLAST of mRNA_M-pyrifera_M_contig779.18321.1 vs. uniprot
Match: M4B6M2_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B6M2_HYAAE)

HSP 1 Score: 75.9 bits (185), Expect = 1.260e-14
Identity = 35/47 (74.47%), Postives = 42/47 (89.36%), Query Frame = 1 
Query:    1 QNNEPLMRALSKLINENEPDLVLFVGEALVGNDGVNQLQMFNQVLHT 141
            QNNEPLMRAL+KL++ NEPDLVLFVGEALVGNDG++QL MF++   T
Sbjct:  477 QNNEPLMRALAKLVSNNEPDLVLFVGEALVGNDGIDQLSMFDRTTRT 523
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig779.18321.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQT5_ECTSI1.080e-1895.56SRP101, alpha subunit of the signal recognition pa... [more]
A0A5K1FVJ2_9MAGN7.240e-1686.05Uncharacterized protein (Fragment) n=1 Tax=Nymphae... [more]
A0A176WI44_MARPO1.420e-1580.77SRP54 domain-containing protein n=2 Tax=Marchantia... [more]
A0A444DVV9_ENSVE1.850e-1580.00Uncharacterized protein n=1 Tax=Ensete ventricosum... [more]
UPI00053B925D5.540e-1570.69signal recognition particle receptor subunit alpha... [more]
A0A0P1B7H3_PLAHL9.210e-1577.78Signal recognition particle receptor subunit alpha... [more]
A0A1Y1IH64_KLENI9.220e-1582.22Signal recognition particle receptor n=1 Tax=Klebs... [more]
A0A4U5LVN4_STECR9.220e-1578.00SRP54 domain-containing protein n=1 Tax=Steinernem... [more]
A0A2K1IZA8_PHYPA9.230e-1584.44SRP54 domain-containing protein n=2 Tax=Physcomitr... [more]
M4B6M2_HYAAE1.260e-1474.47Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig779contigM-pyrifera_M_contig779:21892..22071 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.3
Seed ortholog evalue5e-12
Seed eggNOG ortholog2880.D7FQT5
Preferred nameSRPR
KEGG koko:K06640,ko:K13431,ko:K21989
KEGG TC3.A.5.8
KEGG Pathwayko03060,ko03460,ko04110,ko04115,ko04214,ko04218,ko05165,ko05166,map03060,map03460,map04110,map04115,map04214,map04218,map05165,map05166
KEGG ModuleM00691
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000166,GO:0000902,GO:0000904,GO:0001882,GO:0001883,GO:0002791,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0003924,GO:0005047,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005785,GO:0005789,GO:0005791,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006810,GO:0006886,GO:0006950,GO:0006986,GO:0007154,GO:0007165,GO:0007275,GO:0007399,GO:0007409,GO:0008104,GO:0008150,GO:0009653,GO:0009987,GO:0010033,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0022008,GO:0023052,GO:0030030,GO:0030154,GO:0030182,GO:0030867,GO:0030968,GO:0031090,GO:0031175,GO:0031984,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032879,GO:0032880,GO:0032989,GO:0032990,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034613,GO:0034620,GO:0034976,GO:0035639,GO:0035966,GO:0035967,GO:0036094,GO:0036498,GO:0042175,GO:0042221,GO:0042886,GO:0043021,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045047,GO:0045184,GO:0046907,GO:0048468,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050708,GO:0050789,GO:0050794,GO:0050896,GO:0051046,GO:0051049,GO:0051179,GO:0051223,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0061564,GO:0065007,GO:0070201,GO:0070727,GO:0070887,GO:0070972,GO:0071310,GO:0071702,GO:0071705,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0090087,GO:0090150,GO:0097159,GO:0097367,GO:0098588,GO:0098796,GO:0098827,GO:0120036,GO:0120039,GO:1901265,GO:1901363,GO:1903530
EggNOG free text desc.signal recognition particle binding
EggNOG OGsCOG0552@1,KOG0781@2759
EC2.7.11.1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko02000,ko02044,ko03400
Exons1
Model size180
Cds size162
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816680.1777701-CDS-M-pyrifera_M_contig779:21891..220531622816680.1777701-CDS-M-pyrifera_M_contig779:21891..22053Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig779 21892..22053 -
1692278115.6925921-CDS-M-pyrifera_M_contig779:21891..220531692278115.6925921-CDS-M-pyrifera_M_contig779:21891..22053Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig779 21892..22053 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816680.1889224-UTR-M-pyrifera_M_contig779:22053..220711622816680.1889224-UTR-M-pyrifera_M_contig779:22053..22071Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig779 22054..22071 -
1692278115.7059255-UTR-M-pyrifera_M_contig779:22053..220711692278115.7059255-UTR-M-pyrifera_M_contig779:22053..22071Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig779 22054..22071 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig779.18321.1prot_M-pyrifera_M_contig779.18321.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig779 21892..22053 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig779.18321.1

>prot_M-pyrifera_M_contig779.18321.1 ID=prot_M-pyrifera_M_contig779.18321.1|Name=mRNA_M-pyrifera_M_contig779.18321.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=54bp
MRALSKLINENEPDLVLFVGEALVGNDGVNQLQMFNQVLHTDFAVTINEG
NPA*
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mRNA from alignment at M-pyrifera_M_contig779:21892..22071-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig779.18321.1 ID=mRNA_M-pyrifera_M_contig779.18321.1|Name=mRNA_M-pyrifera_M_contig779.18321.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=180bp|location=Sequence derived from alignment at M-pyrifera_M_contig779:21892..22071- (Macrocystis pyrifera P11B4 male)
CAGAACAACGAGCCATTGATGCGGGCTCTGAGCAAGCTCATAAACGAGAA
CGAGCCAGACCTAGTGCTGTTTGTTGGTGAGGCGCTCGTGGGCAACGATG
GAGTCAATCAGCTACAGATGTTCAACCAGGTACTACATACGGATTTTGCT
GTTACTATTAATGAGGGAAACCCTGCATAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig779:21892..22071-

>mRNA_M-pyrifera_M_contig779.18321.1 ID=mRNA_M-pyrifera_M_contig779.18321.1|Name=mRNA_M-pyrifera_M_contig779.18321.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=324bp|location=Sequence derived from alignment at M-pyrifera_M_contig779:21892..22071- (Macrocystis pyrifera P11B4 male)
ATGCGGGCTCTGAGCAAGCTCATAAACGAGAACGAGCCAGACCTAGTGCT
GTTTGTTGGTGAGGCGCTCGTGGGCAACGATGGAGTCAATCAGCTACAGA
TGTTCAACCAGGTACTACATACGGATTTTGCTGTTACTATTAATGAGGGA
AACCCTGCATAGATGCGGGCTCTGAGCAAGCTCATAAACGAGAACGAGCC
AGACCTAGTGCTGTTTGTTGGTGAGGCGCTCGTGGGCAACGATGGAGTCA
ATCAGCTACAGATGTTCAACCAGGTACTACATACGGATTTTGCTGTTACT
ATTAATGAGGGAAACCCTGCATAG
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