mRNA_M-pyrifera_M_contig77884.18314.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig77884.18314.1
Unique NamemRNA_M-pyrifera_M_contig77884.18314.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig77884.18314.1 vs. uniprot
Match: UPI00106CB837 (set1/Ash2 histone methyltransferase complex subunit ASH2-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106CB837)

HSP 1 Score: 73.6 bits (179), Expect = 1.670e-13
Identity = 35/74 (47.30%), Postives = 48/74 (64.86%), Query Frame = 1 
Query:    1 DSAKSAEKAVPVDRGSCIVFYKNGVSQGVAAENILAGTYYVGISLFQNAKVHANFGPDFAFPVPEHGGEEVKDM 222
            D    +EK +    GS IV+Y+NG S+GVA +NI AGTYY  +SL++NA V  NFGPDF FP  +   + + +M
Sbjct:  352 DRVDQSEKELTPLEGSKIVYYQNGKSKGVAVQNIFAGTYYPAVSLYKNATVSVNFGPDFKFPPQDVDFKPISEM 425
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BLAST of mRNA_M-pyrifera_M_contig77884.18314.1 vs. uniprot
Match: A0A6S7FQB2_PARCT (Set1 Ash2 histone methyltransferase complex subunit ASH2 isoform X2 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7FQB2_PARCT)

HSP 1 Score: 70.5 bits (171), Expect = 2.030e-12
Identity = 34/62 (54.84%), Postives = 41/62 (66.13%), Query Frame = 1 
Query:    1 DSAKSAEKAVPVDRGSCIVFYKNGVSQGVAAENILAGTYYVGISLFQNAKVHANFGPDFAFP 186
            D     EK +    GS IV+Y+NG S+GVA ENI  GTYY  ISL++NA V  NFGP+F FP
Sbjct:  348 DRVDQTEKELSPLEGSKIVYYQNGQSKGVAVENIFGGTYYPAISLYKNATVSINFGPEFKFP 409
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BLAST of mRNA_M-pyrifera_M_contig77884.18314.1 vs. uniprot
Match: A0A2B4SWE3_STYPI (Set1/Ash2 histone methyltransferase complex subunit ASH2 n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4SWE3_STYPI)

HSP 1 Score: 66.6 bits (161), Expect = 5.960e-12
Identity = 32/62 (51.61%), Postives = 40/62 (64.52%), Query Frame = 1 
Query:    1 DSAKSAEKAVPVDRGSCIVFYKNGVSQGVAAENILAGTYYVGISLFQNAKVHANFGPDFAFP 186
            D    AEK +    GS + FYKNGV QGVA + I  GTYY  +SL++NA +  NFGPDF +P
Sbjct:   55 DHVDKAEKNLKPVPGSQVKFYKNGVCQGVAWQEIYDGTYYPAVSLYKNATITINFGPDFKYP 116
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BLAST of mRNA_M-pyrifera_M_contig77884.18314.1 vs. uniprot
Match: A0A6B2LEN6_9EUKA (B30.2/SPRY domain-containing protein (Fragment) n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LEN6_9EUKA)

HSP 1 Score: 67.8 bits (164), Expect = 6.660e-12
Identity = 32/56 (57.14%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:   19 EKAVPVDRGSCIVFYKNGVSQGVAAENILAGTYYVGISLFQNAKVHANFGPDFAFP 186
            ++ +PV  GS I+F+KNGVSQ VA ENI  G+YY  +SL+ NA V  NFGP F FP
Sbjct:  145 DEDLPVHPGSKIIFFKNGVSQNVAFENIPQGSYYPAVSLYFNASVCVNFGPQFCFP 200
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BLAST of mRNA_M-pyrifera_M_contig77884.18314.1 vs. uniprot
Match: A0A8B7Z618_ACAPL (set1/Ash2 histone methyltransferase complex subunit ASH2-like isoform X1 n=2 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7Z618_ACAPL)

HSP 1 Score: 68.6 bits (166), Expect = 9.980e-12
Identity = 33/62 (53.23%), Postives = 40/62 (64.52%), Query Frame = 1 
Query:    1 DSAKSAEKAVPVDRGSCIVFYKNGVSQGVAAENILAGTYYVGISLFQNAKVHANFGPDFAFP 186
            D  +  E A+ +  G+ I FYKNGVSQGVA E+I  GTYY  ISL++   V  NFGP F FP
Sbjct:  538 DQVQETENALNLCPGTKIAFYKNGVSQGVAFEDIFEGTYYPAISLYKGCTVSVNFGPQFKFP 599
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BLAST of mRNA_M-pyrifera_M_contig77884.18314.1 vs. uniprot
Match: A0A3S2MST8_ORYJA (B30.2/SPRY domain-containing protein n=1 Tax=Oryzias javanicus TaxID=123683 RepID=A0A3S2MST8_ORYJA)

HSP 1 Score: 68.2 bits (165), Expect = 1.340e-11
Identity = 35/78 (44.87%), Postives = 45/78 (57.69%), Query Frame = 1 
Query:    1 DSAKSAEKAVPVDRGSCIVFYKNGVSQGVAAENILAGTYYVGISLFQNAKVHANFGPDFAFPVPEHGGEEVKDMASAA 234
            D    AEKA+     S ++FYKNGVSQGVA EN+  G YY  ISL+++  V  NFGP F F   +   + + DM   A
Sbjct:  378 DYVDKAEKALKATSPSKMIFYKNGVSQGVAFENLFEGIYYPAISLYKSCTVSVNFGPHFKFAPKDVKYQPISDMGWGA 455
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BLAST of mRNA_M-pyrifera_M_contig77884.18314.1 vs. uniprot
Match: A0A3P9MDD7_ORYLA (ASH2 like, histone lysine methyltransferase complex subunit n=19 Tax=Percomorphaceae TaxID=1489872 RepID=A0A3P9MDD7_ORYLA)

HSP 1 Score: 68.2 bits (165), Expect = 1.360e-11
Identity = 35/78 (44.87%), Postives = 45/78 (57.69%), Query Frame = 1 
Query:    1 DSAKSAEKAVPVDRGSCIVFYKNGVSQGVAAENILAGTYYVGISLFQNAKVHANFGPDFAFPVPEHGGEEVKDMASAA 234
            D    AEKA+     S ++FYKNGVSQGVA EN+  G YY  ISL+++  V  NFGP F F   +   + + DM   A
Sbjct:  489 DYVDKAEKALKATSPSRMIFYKNGVSQGVAFENLFEGIYYPAISLYKSCTVSVNFGPHFKFAPKDVQYQPISDMGWGA 566
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BLAST of mRNA_M-pyrifera_M_contig77884.18314.1 vs. uniprot
Match: UPI0014257C71 (set1/Ash2 histone methyltransferase complex subunit ASH2-like isoform X1 n=2 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014257C71)

HSP 1 Score: 68.2 bits (165), Expect = 1.370e-11
Identity = 32/62 (51.61%), Postives = 42/62 (67.74%), Query Frame = 1 
Query:    1 DSAKSAEKAVPVDRGSCIVFYKNGVSQGVAAENILAGTYYVGISLFQNAKVHANFGPDFAFP 186
            D  +  E+ +    GS I+FYKNGVSQG+A E++  GTYY  IS ++NA V ANFGP F +P
Sbjct:  696 DPIQEVEQRLQKAEGSQIIFYKNGVSQGIAWEDVYEGTYYPAISTYKNAVVVANFGPHFKYP 757
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BLAST of mRNA_M-pyrifera_M_contig77884.18314.1 vs. uniprot
Match: H3AJF0_LATCH (ASH2 like, histone lysine methyltransferase complex subunit n=1 Tax=Latimeria chalumnae TaxID=7897 RepID=H3AJF0_LATCH)

HSP 1 Score: 67.8 bits (164), Expect = 1.800e-11
Identity = 33/74 (44.59%), Postives = 45/74 (60.81%), Query Frame = 1 
Query:    1 DSAKSAEKAVPVDRGSCIVFYKNGVSQGVAAENILAGTYYVGISLFQNAKVHANFGPDFAFPVPEHGGEEVKDM 222
            D    AEK++  + GS ++FYKNGVSQGVA  +I  G YY  ISL+++  V  NFGP F +P  +     + DM
Sbjct:  338 DFVDKAEKSLKPNLGSIMIFYKNGVSQGVAYRDIYEGVYYPAISLYKSCTVSINFGPHFKYPPKDVAYRPMSDM 411
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BLAST of mRNA_M-pyrifera_M_contig77884.18314.1 vs. uniprot
Match: H3AJE9_LATCH (ASH2 like, histone lysine methyltransferase complex subunit n=2 Tax=Latimeria chalumnae TaxID=7897 RepID=H3AJE9_LATCH)

HSP 1 Score: 67.8 bits (164), Expect = 1.810e-11
Identity = 33/74 (44.59%), Postives = 45/74 (60.81%), Query Frame = 1 
Query:    1 DSAKSAEKAVPVDRGSCIVFYKNGVSQGVAAENILAGTYYVGISLFQNAKVHANFGPDFAFPVPEHGGEEVKDM 222
            D    AEK++  + GS ++FYKNGVSQGVA  +I  G YY  ISL+++  V  NFGP F +P  +     + DM
Sbjct:  344 DFVDKAEKSLKPNLGSIMIFYKNGVSQGVAYRDIYEGVYYPAISLYKSCTVSINFGPHFKYPPKDVAYRPMSDM 417
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig77884.18314.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00106CB8371.670e-1347.30set1/Ash2 histone methyltransferase complex subuni... [more]
A0A6S7FQB2_PARCT2.030e-1254.84Set1 Ash2 histone methyltransferase complex subuni... [more]
A0A2B4SWE3_STYPI5.960e-1251.61Set1/Ash2 histone methyltransferase complex subuni... [more]
A0A6B2LEN6_9EUKA6.660e-1257.14B30.2/SPRY domain-containing protein (Fragment) n=... [more]
A0A8B7Z618_ACAPL9.980e-1253.23set1/Ash2 histone methyltransferase complex subuni... [more]
A0A3S2MST8_ORYJA1.340e-1144.87B30.2/SPRY domain-containing protein n=1 Tax=Oryzi... [more]
A0A3P9MDD7_ORYLA1.360e-1144.87ASH2 like, histone lysine methyltransferase comple... [more]
UPI0014257C711.370e-1151.61set1/Ash2 histone methyltransferase complex subuni... [more]
H3AJF0_LATCH1.800e-1144.59ASH2 like, histone lysine methyltransferase comple... [more]
H3AJE9_LATCH1.810e-1144.59ASH2 like, histone lysine methyltransferase comple... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig77884contigM-pyrifera_M_contig77884:235..468 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score75.5
Seed ortholog evalue1.2e-11
Seed eggNOG ortholog10228.TriadP58997
Preferred nameASH2L
KEGG koko:K14964
KEGG Pathwayko04934,map04934
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000785,GO:0000790,GO:0000791,GO:0000902,GO:0000904,GO:0001067,GO:0001932,GO:0001933,GO:0002009,GO:0002164,GO:0002165,GO:0002168,GO:0002376,GO:0002520,GO:0002682,GO:0003002,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005700,GO:0005703,GO:0005719,GO:0006139,GO:0006325,GO:0006338,GO:0006351,GO:0006355,GO:0006357,GO:0006464,GO:0006479,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007275,GO:0007389,GO:0007399,GO:0007417,GO:0007420,GO:0007444,GO:0007472,GO:0007474,GO:0007476,GO:0007552,GO:0007560,GO:0007568,GO:0008013,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008284,GO:0008340,GO:0008757,GO:0009058,GO:0009059,GO:0009653,GO:0009719,GO:0009725,GO:0009791,GO:0009886,GO:0009887,GO:0009888,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010033,GO:0010259,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010563,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010638,GO:0010639,GO:0014070,GO:0016043,GO:0016070,GO:0016278,GO:0016279,GO:0016358,GO:0016569,GO:0016570,GO:0016571,GO:0016740,GO:0016741,GO:0018022,GO:0018024,GO:0018130,GO:0018193,GO:0018205,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019538,GO:0019899,GO:0022008,GO:0022607,GO:0030030,GO:0030097,GO:0030154,GO:0030182,GO:0031056,GO:0031057,GO:0031058,GO:0031060,GO:0031062,GO:0031175,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031400,GO:0031401,GO:0031974,GO:0031981,GO:0032259,GO:0032268,GO:0032269,GO:0032270,GO:0032501,GO:0032502,GO:0032774,GO:0032989,GO:0032990,GO:0032991,GO:0033043,GO:0033044,GO:0033127,GO:0033128,GO:0033554,GO:0033993,GO:0034641,GO:0034645,GO:0034654,GO:0034708,GO:0034968,GO:0035075,GO:0035097,GO:0035107,GO:0035114,GO:0035120,GO:0035209,GO:0035220,GO:0035239,GO:0035295,GO:0036211,GO:0036314,GO:0040029,GO:0042054,GO:0042127,GO:0042221,GO:0042325,GO:0042326,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0043627,GO:0043933,GO:0044085,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044665,GO:0044666,GO:0045595,GO:0045637,GO:0045652,GO:0045815,GO:0045893,GO:0045935,GO:0045936,GO:0045944,GO:0046483,GO:0048096,GO:0048188,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048563,GO:0048569,GO:0048666,GO:0048667,GO:0048699,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048812,GO:0048813,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051239,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051254,GO:0051276,GO:0051568,GO:0051569,GO:0051571,GO:0051716,GO:0060255,GO:0060290,GO:0060322,GO:0060429,GO:0060562,GO:0065003,GO:0065007,GO:0070013,GO:0071339,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097305,GO:0097659,GO:0098687,GO:0120036,GO:0120039,GO:0140096,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1901654,GO:1901700,GO:1902275,GO:1902494,GO:1902680,GO:1903506,GO:1903508,GO:1903706,GO:1904837,GO:1905268,GO:1905269,GO:1990188,GO:1990234,GO:2000026,GO:2000112,GO:2001141,GO:2001251,GO:2001252
EggNOG free text desc.euchromatin binding
EggNOG OGs38HSI@33154,3BDFF@33208,KOG2626@1,KOG2626@2759
COG Functional cat.BK
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Exons1
Model size234
Cds size234
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816679.8651135-CDS-M-pyrifera_M_contig77884:234..4681622816679.8651135-CDS-M-pyrifera_M_contig77884:234..468Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77884 235..468 +
1692278115.5323608-CDS-M-pyrifera_M_contig77884:234..4681692278115.5323608-CDS-M-pyrifera_M_contig77884:234..468Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77884 235..468 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig77884.18314.1prot_M-pyrifera_M_contig77884.18314.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig77884 235..468 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig77884.18314.1

>prot_M-pyrifera_M_contig77884.18314.1 ID=prot_M-pyrifera_M_contig77884.18314.1|Name=mRNA_M-pyrifera_M_contig77884.18314.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=78bp
DSAKSAEKAVPVDRGSCIVFYKNGVSQGVAAENILAGTYYVGISLFQNAK
VHANFGPDFAFPVPEHGGEEVKDMASAA
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mRNA from alignment at M-pyrifera_M_contig77884:235..468+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig77884.18314.1 ID=mRNA_M-pyrifera_M_contig77884.18314.1|Name=mRNA_M-pyrifera_M_contig77884.18314.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=234bp|location=Sequence derived from alignment at M-pyrifera_M_contig77884:235..468+ (Macrocystis pyrifera P11B4 male)
GATTCGGCAAAGTCTGCTGAGAAGGCAGTGCCGGTGGACCGCGGCAGCTG
CATTGTGTTCTACAAGAACGGCGTCTCCCAAGGCGTCGCCGCAGAGAACA
TCTTGGCAGGCACCTACTACGTAGGCATTTCCTTGTTCCAGAACGCCAAA
GTACACGCCAACTTCGGGCCTGACTTTGCCTTCCCCGTGCCAGAGCACGG
CGGTGAGGAGGTGAAGGACATGGCCAGCGCCGCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig77884:235..468+

>mRNA_M-pyrifera_M_contig77884.18314.1 ID=mRNA_M-pyrifera_M_contig77884.18314.1|Name=mRNA_M-pyrifera_M_contig77884.18314.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=468bp|location=Sequence derived from alignment at M-pyrifera_M_contig77884:235..468+ (Macrocystis pyrifera P11B4 male)
GATTCGGCAAAGTCTGCTGAGAAGGCAGTGCCGGTGGACCGCGGCAGCTG
CATTGTGTTCTACAAGAACGGCGTCTCCCAAGGCGTCGCCGCAGAGAACA
TCTTGGCAGGCACCTACTACGTAGGCATTTCCTTGTTCCAGAACGCCAAA
GTACACGCCAACTTCGGGCCTGACTTTGCCTTCCCCGTGCCAGAGCACGG
CGGTGAGGAGGTGAAGGACATGGCCAGCGCCGCCGATTCGGCAAAGTCTG
CTGAGAAGGCAGTGCCGGTGGACCGCGGCAGCTGCATTGTGTTCTACAAG
AACGGCGTCTCCCAAGGCGTCGCCGCAGAGAACATCTTGGCAGGCACCTA
CTACGTAGGCATTTCCTTGTTCCAGAACGCCAAAGTACACGCCAACTTCG
GGCCTGACTTTGCCTTCCCCGTGCCAGAGCACGGCGGTGAGGAGGTGAAG
GACATGGCCAGCGCCGCC
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