mRNA_M-pyrifera_M_contig77812.18306.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig77812.18306.1
Unique NamemRNA_M-pyrifera_M_contig77812.18306.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig77812.18306.1 vs. uniprot
Match: A0A6H5L407_9PHAE (Annexin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L407_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 1.400e-16
Identity = 36/61 (59.02%), Postives = 46/61 (75.41%), Query Frame = 1
Query:   52 QMDAEDIYQACKGLGTRNSRLYSIACGRTKPHLAQVDKYYRSMFNKSLEDEVRSECSGDYR 234
            Q D  DI +ACKGLGT +SRL SI CGRTK HLA+VD+YY S++  S+E +V+ EC G Y+
Sbjct:  357 QADCGDIREACKGLGTNDSRLVSIICGRTKKHLARVDQYYHSLYGMSVEAQVKHECFGVYK 417          
BLAST of mRNA_M-pyrifera_M_contig77812.18306.1 vs. uniprot
Match: D7FJE4_ECTSI (Annexin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJE4_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 1.900e-16
Identity = 36/61 (59.02%), Postives = 46/61 (75.41%), Query Frame = 1
Query:   52 QMDAEDIYQACKGLGTRNSRLYSIACGRTKPHLAQVDKYYRSMFNKSLEDEVRSECSGDYR 234
            Q D  DI +ACKGLGT +SRL SI CGRTK HLA+VD+YY S++  S+E +V+ EC G Y+
Sbjct:  378 QADCGDIREACKGLGTNDSRLVSIICGRTKKHLARVDQYYHSLYGMSVEAQVKYECFGVYK 438          
BLAST of mRNA_M-pyrifera_M_contig77812.18306.1 vs. uniprot
Match: A0A0N4V6K0_ENTVE (Annexin n=1 Tax=Enterobius vermicularis TaxID=51028 RepID=A0A0N4V6K0_ENTVE)

HSP 1 Score: 64.7 bits (156), Expect = 1.910e-10
Identity = 28/67 (41.79%), Postives = 40/67 (59.70%), Query Frame = 1
Query:   34 LLPCPPQMDAEDIYQACKGLGTRNSRLYSIACGRTKPHLAQVDKYYRSMFNKSLEDEVRSECSGDYR 234
            L+  P + D   +Y A KGLGT+ S L  I C RT   LA +   Y+  +NKSLED++  + SGD++
Sbjct:   93 LMETPTKFDVLQLYNAMKGLGTKESVLIDIVCSRTPSELAAIKNEYKDEYNKSLEDDIVGDTSGDFK 159          
BLAST of mRNA_M-pyrifera_M_contig77812.18306.1 vs. uniprot
Match: D8LG01_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG01_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 3.240e-10
Identity = 24/61 (39.34%), Postives = 42/61 (68.85%), Query Frame = 1
Query:   52 QMDAEDIYQACKGLGTRNSRLYSIACGRTKPHLAQVDKYYRSMFNKSLEDEVRSECSGDYR 234
            ++DAE I++ACKG+GT   R+  I C RTK  + ++D+ YR+M+  +L +++  + SGD +
Sbjct:  289 KVDAEQIWRACKGMGTNEGRVIGIICTRTKSQVERIDEMYRTMYGMTLREQLEKDLSGDLK 349          
BLAST of mRNA_M-pyrifera_M_contig77812.18306.1 vs. uniprot
Match: A0A673CC35_9TELE (Annexin n=2 Tax=Sphaeramia orbicularis TaxID=375764 RepID=A0A673CC35_9TELE)

HSP 1 Score: 63.9 bits (154), Expect = 3.240e-10
Identity = 29/67 (43.28%), Postives = 41/67 (61.19%), Query Frame = 1
Query:   34 LLPCPPQMDAEDIYQACKGLGTRNSRLYSIACGRTKPHLAQVDKYYRSMFNKSLEDEVRSECSGDYR 234
            LL  P Q DA+ + QA KGLGT    L  I   RT   L +V K Y++ + K LED+++S+ SGD++
Sbjct:   68 LLKTPAQYDAQQLKQAMKGLGTDEDTLIEILASRTNRELEEVKKAYKAEYKKELEDDIKSDTSGDFK 134          
BLAST of mRNA_M-pyrifera_M_contig77812.18306.1 vs. uniprot
Match: UPI00109B84A8 (uncharacterized protein LOC110245728 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI00109B84A8)

HSP 1 Score: 64.3 bits (155), Expect = 3.310e-10
Identity = 31/71 (43.66%), Postives = 44/71 (61.97%), Query Frame = 1
Query:   19 ALAAPLLPCPPQMDAEDIYQACKGLGTRNSRLYSIACGRTKPHLAQVDKYYRSMFNKSLEDEVRSECSGDY 231
            A+AA LLP P Q DA  +Y A KGLGT  + L  I C RT   +  +   Y+ ++  +LED+V+S+ SGD+
Sbjct:  696 AVAASLLP-PSQADARSLYLAMKGLGTDETVLIEILCTRTNSEIEVIKNDYKKLYESTLEDDVKSDTSGDF 765          
BLAST of mRNA_M-pyrifera_M_contig77812.18306.1 vs. uniprot
Match: A0A6P8I9X9_ACTTE (Annexin n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8I9X9_ACTTE)

HSP 1 Score: 64.3 bits (155), Expect = 3.330e-10
Identity = 30/71 (42.25%), Postives = 44/71 (61.97%), Query Frame = 1
Query:   19 ALAAPLLPCPPQMDAEDIYQACKGLGTRNSRLYSIACGRTKPHLAQVDKYYRSMFNKSLEDEVRSECSGDY 231
            A+A  LLP P Q DA  ++ A KG+GT  + L  I C R+   +  + K Y+  + KSLE++V+SE SGD+
Sbjct: 1249 AIAGLLLP-PSQADARTLHSAMKGVGTNEAVLIEILCSRSNAEIQNIKKDYKKQYGKSLEEDVKSETSGDF 1318          
BLAST of mRNA_M-pyrifera_M_contig77812.18306.1 vs. uniprot
Match: A0A673CBS3_9TELE (Annexin n=2 Tax=Sphaeramia orbicularis TaxID=375764 RepID=A0A673CBS3_9TELE)

HSP 1 Score: 63.9 bits (154), Expect = 3.960e-10
Identity = 29/67 (43.28%), Postives = 41/67 (61.19%), Query Frame = 1
Query:   34 LLPCPPQMDAEDIYQACKGLGTRNSRLYSIACGRTKPHLAQVDKYYRSMFNKSLEDEVRSECSGDYR 234
            LL  P Q DA+ + QA KGLGT    L  I   RT   L +V K Y++ + K LED+++S+ SGD++
Sbjct:  103 LLKTPAQYDAQQLKQAMKGLGTDEDTLIEILASRTNRELEEVKKAYKAEYKKELEDDIKSDTSGDFK 169          
BLAST of mRNA_M-pyrifera_M_contig77812.18306.1 vs. uniprot
Match: A0A673CFG9_9TELE (Annexin n=2 Tax=Sphaeramia orbicularis TaxID=375764 RepID=A0A673CFG9_9TELE)

HSP 1 Score: 63.9 bits (154), Expect = 4.080e-10
Identity = 29/67 (43.28%), Postives = 41/67 (61.19%), Query Frame = 1
Query:   34 LLPCPPQMDAEDIYQACKGLGTRNSRLYSIACGRTKPHLAQVDKYYRSMFNKSLEDEVRSECSGDYR 234
            LL  P Q DA+ + QA KGLGT    L  I   RT   L +V K Y++ + K LED+++S+ SGD++
Sbjct:  141 LLKTPAQYDAQQLKQAMKGLGTDEDTLIEILASRTNRELEEVKKAYKAEYKKELEDDIKSDTSGDFK 207          
BLAST of mRNA_M-pyrifera_M_contig77812.18306.1 vs. uniprot
Match: F1LDR9_ASCSU (Annexin (Fragment) n=1 Tax=Ascaris suum TaxID=6253 RepID=F1LDR9_ASCSU)

HSP 1 Score: 60.5 bits (145), Expect = 2.800e-9
Identity = 29/67 (43.28%), Postives = 39/67 (58.21%), Query Frame = 1
Query:   34 LLPCPPQMDAEDIYQACKGLGTRNSRLYSIACGRTKPHLAQVDKYYRSMFNKSLEDEVRSECSGDYR 234
            L+  P + DA  +YQA KGLGTR S L  I C RT P    + K Y   F +SLE +V  + SG+++
Sbjct:   92 LMEIPIKYDAIQLYQAMKGLGTRESTLIDIICTRTDPEKQALKKVYEEEFGRSLEADVIDDTSGEFQ 158          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig77812.18306.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L407_9PHAE1.400e-1659.02Annexin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
D7FJE4_ECTSI1.900e-1659.02Annexin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A0N4V6K0_ENTVE1.910e-1041.79Annexin n=1 Tax=Enterobius vermicularis TaxID=5102... [more]
D8LG01_ECTSI3.240e-1039.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A673CC35_9TELE3.240e-1043.28Annexin n=2 Tax=Sphaeramia orbicularis TaxID=37576... [more]
UPI00109B84A83.310e-1043.66uncharacterized protein LOC110245728 n=1 Tax=Exaip... [more]
A0A6P8I9X9_ACTTE3.330e-1042.25Annexin n=1 Tax=Actinia tenebrosa TaxID=6105 RepID... [more]
A0A673CBS3_9TELE3.960e-1043.28Annexin n=2 Tax=Sphaeramia orbicularis TaxID=37576... [more]
A0A673CFG9_9TELE4.080e-1043.28Annexin n=2 Tax=Sphaeramia orbicularis TaxID=37576... [more]
F1LDR9_ASCSU2.800e-943.28Annexin (Fragment) n=1 Tax=Ascaris suum TaxID=6253... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig77812contigM-pyrifera_M_contig77812:375..611 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.5
Seed ortholog evalue3.9e-13
Seed eggNOG ortholog2880.D7FJE4
Hectar predicted targeting categoryother localisation
EggNOG free text desc.calcium-dependent phospholipid binding
EggNOG OGsKOG0819@1,KOG0819@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size237
Cds size237
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816679.4247534-CDS-M-pyrifera_M_contig77812:374..6111622816679.4247534-CDS-M-pyrifera_M_contig77812:374..611Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77812 375..611 -
1692278115.224395-CDS-M-pyrifera_M_contig77812:374..6111692278115.224395-CDS-M-pyrifera_M_contig77812:374..611Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77812 375..611 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig77812.18306.1prot_M-pyrifera_M_contig77812.18306.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig77812 375..611 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig77812.18306.1

>prot_M-pyrifera_M_contig77812.18306.1 ID=prot_M-pyrifera_M_contig77812.18306.1|Name=mRNA_M-pyrifera_M_contig77812.18306.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=79bp
DDTPPRALAAPLLPCPPQMDAEDIYQACKGLGTRNSRLYSIACGRTKPHL
AQVDKYYRSMFNKSLEDEVRSECSGDYR*
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mRNA from alignment at M-pyrifera_M_contig77812:375..611-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig77812.18306.1 ID=mRNA_M-pyrifera_M_contig77812.18306.1|Name=mRNA_M-pyrifera_M_contig77812.18306.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=237bp|location=Sequence derived from alignment at M-pyrifera_M_contig77812:375..611- (Macrocystis pyrifera P11B4 male)
GATGATACGCCTCCTCGCGCTCTCGCCGCCCCTCTCCTCCCCTGCCCTCC GCAGATGGATGCCGAAGACATCTATCAGGCGTGCAAGGGTCTAGGCACGA GAAACTCCCGGCTCTACTCCATCGCCTGCGGACGCACGAAGCCGCACTTG GCGCAGGTGGATAAGTACTACCGCTCGATGTTCAACAAGTCGCTAGAGGA CGAAGTGAGGTCCGAATGCTCCGGGGATTATCGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig77812:375..611-

>mRNA_M-pyrifera_M_contig77812.18306.1 ID=mRNA_M-pyrifera_M_contig77812.18306.1|Name=mRNA_M-pyrifera_M_contig77812.18306.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=474bp|location=Sequence derived from alignment at M-pyrifera_M_contig77812:375..611- (Macrocystis pyrifera P11B4 male)
GATGATACGCCTCCTCGCGCTCTCGCCGCCCCTCTCCTCCCCTGCCCTCC
GCAGATGGATGCCGAAGACATCTATCAGGCGTGCAAGGGTCTAGGCACGA
GAAACTCCCGGCTCTACTCCATCGCCTGCGGACGCACGAAGCCGCACTTG
GCGCAGGTGGATAAGTACTACCGCTCGATGTTCAACAAGTCGCTAGAGGA
CGAAGTGAGGTCCGAATGCTCCGGGGATTATCGGTGAGATGATACGCCTC
CTCGCGCTCTCGCCGCCCCTCTCCTCCCCTGCCCTCCGCAGATGGATGCC
GAAGACATCTATCAGGCGTGCAAGGGTCTAGGCACGAGAAACTCCCGGCT
CTACTCCATCGCCTGCGGACGCACGAAGCCGCACTTGGCGCAGGTGGATA
AGTACTACCGCTCGATGTTCAACAAGTCGCTAGAGGACGAAGTGAGGTCC
GAATGCTCCGGGGATTATCGGTGA
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