mRNA_M-pyrifera_M_contig77802.18305.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig77802.18305.1 vs. uniprot
Match: A0A059Q2Y9_9POAL (RING-type domain-containing protein n=1 Tax=Saccharum hybrid cultivar R570 TaxID=131158 RepID=A0A059Q2Y9_9POAL) HSP 1 Score: 82.4 bits (202), Expect = 1.370e-16 Identity = 45/103 (43.69%), Postives = 56/103 (54.37%), Query Frame = 1 Query: 1 RRRGXXXXXXXXRGGEVEEPRVTPYLRIIAMPMDHYNAKEHGEDE---ECAICLANFKKGEEMRRLP-CNHRFHPECLQRWLESSTTCPLCKQSVLRPQPEEA 297 RRR GG V V P L + A+P+ Y A G E EC++CLA + GEE R LP C H FH EC+ WL S TTCPLC+ +V +P PE + Sbjct: 80 RRRRRGDGTAGSNGGGVRTRGVDPDL-LRALPVTVYRAAAPGSKEDAAECSVCLAELQDGEEARFLPRCGHGFHAECVDMWLASHTTCPLCRLTVSKPDPESS 181
BLAST of mRNA_M-pyrifera_M_contig77802.18305.1 vs. uniprot
Match: A0A1A9VZT9_9MUSC (RING-type domain-containing protein n=2 Tax=Glossina brevipalpis TaxID=37001 RepID=A0A1A9VZT9_9MUSC) HSP 1 Score: 78.6 bits (192), Expect = 1.810e-16 Identity = 30/68 (44.12%), Postives = 48/68 (70.59%), Query Frame = 1 Query: 76 LRIIAMPMDHYNAK-EHGEDEECAICLANFKKGEEMRRLPCNHRFHPECLQRWLESSTTCPLCKQSVL 276 ++I +P + YN + +G+ CAIC+ +F E +R LPCNHRFH EC+ +WL+S++TCP+C+ V+ Sbjct: 72 VKINMLPSNEYNIEMSNGDQLSCAICINDFLSKEIIRTLPCNHRFHVECIDKWLQSNSTCPMCRARVI 139
BLAST of mRNA_M-pyrifera_M_contig77802.18305.1 vs. uniprot
Match: A0A7S0QVM1_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0QVM1_9CHLO) HSP 1 Score: 77.8 bits (190), Expect = 2.200e-16 Identity = 34/79 (43.04%), Postives = 48/79 (60.76%), Query Frame = 1 Query: 61 RVTPYLRIIAMPMDHYNAKEHGED--EECAICLANFKKGEEMRRLPCNHRFHPECLQRWLESSTTCPLCKQSVLRPQPE 291 R+TP + A+P+ Y E GE+ E C ICL +F KG+++RRLPC H FH C+ WL + CP+CK + R + E Sbjct: 43 RLTP-SEVKAIPVVEYEGAEEGEEGAELCTICLDDFAKGDQLRRLPCRHHFHVTCIDEWLGRRSMCPVCKHDLSRARRE 120
BLAST of mRNA_M-pyrifera_M_contig77802.18305.1 vs. uniprot
Match: A0A836J098_9ROSI (E3 ubiquitin-protein ligase XERICO n=2 Tax=Salix suchowensis TaxID=1278906 RepID=A0A836J098_9ROSI) HSP 1 Score: 79.0 bits (193), Expect = 2.990e-16 Identity = 37/72 (51.39%), Postives = 46/72 (63.89%), Query Frame = 1 Query: 73 YLRII--AMPMDHYNAKE-HGEDEECAICLANFKKGEEMRRLPCNHRFHPECLQRWLESS-TTCPLCKQSVL 276 YL ++ A P HY+ K + ECA+CL+ F KGE +RRL CNH FH ECL RWL+ TCPLC+ VL Sbjct: 53 YLSLVEKANPAIHYSEKPTRKQSRECAVCLSEFMKGERVRRLRCNHTFHKECLDRWLQQYLATCPLCRTRVL 124
BLAST of mRNA_M-pyrifera_M_contig77802.18305.1 vs. uniprot
Match: A0A835CYV7_9MAGN (RING-type domain-containing protein n=2 Tax=Tetracentron sinense TaxID=13715 RepID=A0A835CYV7_9MAGN) HSP 1 Score: 78.2 bits (191), Expect = 4.380e-16 Identity = 34/71 (47.89%), Postives = 49/71 (69.01%), Query Frame = 1 Query: 73 YLRIIA--MPMDHYNAKEHGEDEECAICLANFKKGEEMRRLPCNHRFHPECLQRWLE-SSTTCPLCKQSVL 276 YL +I +P Y ++ + ECA+CL+NF++GE++R L CNH FH +CL +WL+ S TCPLC+ SVL Sbjct: 22 YLALIEDKIPTFRYRSESTPDLIECAVCLSNFREGEKIRELKCNHIFHKDCLDKWLQHDSATCPLCRSSVL 92
BLAST of mRNA_M-pyrifera_M_contig77802.18305.1 vs. uniprot
Match: A0A2G5VNG8_9PELO (RING-type domain-containing protein n=2 Tax=Caenorhabditis TaxID=6237 RepID=A0A2G5VNG8_9PELO) HSP 1 Score: 81.6 bits (200), Expect = 5.620e-16 Identity = 36/87 (41.38%), Postives = 54/87 (62.07%), Query Frame = 1 Query: 40 GGEVEEPRVTPYLRIIAMPMDHYNAKEHGEDEE--CAICLANFKKGEEMRRLPCNHRFHPECLQRWLESSTTCPLCKQSVLR-PQPE 291 G E++ P I + AK+ GE+E+ C +CL NF+ GE +R+LPCNH FHPEC+ +WL+ + CP+C++ + R P PE Sbjct: 407 GLEIDVPIGASQTDIDKYTNETKYAKKEGEEEDDTCTVCLNNFEAGESIRKLPCNHLFHPECIYKWLDINKKCPMCREEIDRKPVPE 493
BLAST of mRNA_M-pyrifera_M_contig77802.18305.1 vs. uniprot
Match: A0A835CYW4_9MAGN (RING-type domain-containing protein n=1 Tax=Tetracentron sinense TaxID=13715 RepID=A0A835CYW4_9MAGN) HSP 1 Score: 77.8 bits (190), Expect = 5.650e-16 Identity = 34/71 (47.89%), Postives = 49/71 (69.01%), Query Frame = 1 Query: 73 YLRIIAM--PMDHYNAKEHGEDEECAICLANFKKGEEMRRLPCNHRFHPECLQRWLE-SSTTCPLCKQSVL 276 YL +I + P Y ++ + ECA+CL+NF++GE++R L CNH FH +CL +WL+ S TCPLC+ SVL Sbjct: 50 YLALIEIKIPTFRYRSESTPDLIECAVCLSNFREGEKIRELKCNHIFHKDCLDKWLQHDSPTCPLCRSSVL 120
BLAST of mRNA_M-pyrifera_M_contig77802.18305.1 vs. uniprot
Match: A0A834WGF5_9FABA (E3 ubiquitin-protein ligase RING1-like n=1 Tax=Senna tora TaxID=362788 RepID=A0A834WGF5_9FABA) HSP 1 Score: 76.6 bits (187), Expect = 8.430e-16 Identity = 28/64 (43.75%), Postives = 41/64 (64.06%), Query Frame = 1 Query: 82 IIAMPMDHYNAKEHGEDEECAICLANFKKGEEMRRLPCNHRFHPECLQRWLESSTTCPLCKQSV 273 +I P H + E EC ICLA ++ G+ ++ LPCNHRFH +CL++WL TCPLC+ ++ Sbjct: 63 VIYQPPSHASDTTTDEQTECIICLATYESGDRLKVLPCNHRFHGDCLEKWLTDHATCPLCRYNL 126
BLAST of mRNA_M-pyrifera_M_contig77802.18305.1 vs. uniprot
Match: B9H582_POPTR (RING-type domain-containing protein n=2 Tax=Populus TaxID=3689 RepID=B9H582_POPTR) HSP 1 Score: 77.4 bits (189), Expect = 8.730e-16 Identity = 36/74 (48.65%), Postives = 46/74 (62.16%), Query Frame = 1 Query: 67 TPYLRIIAM--PMDHYNAK-EHGEDEECAICLANFKKGEEMRRLPCNHRFHPECLQRWLESS-TTCPLCKQSVL 276 T YL +I P HY+ K + ECA+CL+ F KGE +R+L CNH FH ECL +WL+ TCPLC+ VL Sbjct: 51 TQYLSLIEKTNPAIHYSEKFSRQQSRECAVCLSGFMKGERVRKLRCNHTFHKECLDKWLQQYLATCPLCRTRVL 124
BLAST of mRNA_M-pyrifera_M_contig77802.18305.1 vs. uniprot
Match: UPI00057B3E19 (probable E3 ubiquitin-protein ligase XERICO n=1 Tax=Populus euphratica TaxID=75702 RepID=UPI00057B3E19) HSP 1 Score: 77.4 bits (189), Expect = 8.730e-16 Identity = 41/92 (44.57%), Postives = 55/92 (59.78%), Query Frame = 1 Query: 40 GGEVEEP----RV--TPYLRIIAM--PMDHYNAK-EHGEDEECAICLANFKKGEEMRRLPCNHRFHPECLQRWLESS-TTCPLCKQSVLRPQ 285 G EV P R+ + YL II P HY+ K + ECA+CL+ F +GE +R+L C+H FH ECL +WL+ S TCPLC+ +VL Q Sbjct: 36 GSEVTNPDKLFRIISSQYLNIIEKTNPTLHYSEKISRAQYRECAVCLSEFTEGERVRKLKCDHTFHQECLDKWLQQSMATCPLCRTTVLPDQ 127 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig77802.18305.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig77802.18305.1 >prot_M-pyrifera_M_contig77802.18305.1 ID=prot_M-pyrifera_M_contig77802.18305.1|Name=mRNA_M-pyrifera_M_contig77802.18305.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=100bp RRRGGGGGGGGGRGGEVEEPRVTPYLRIIAMPMDHYNAKEHGEDEECAICback to top mRNA from alignment at M-pyrifera_M_contig77802:25..324- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig77802.18305.1 ID=mRNA_M-pyrifera_M_contig77802.18305.1|Name=mRNA_M-pyrifera_M_contig77802.18305.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=300bp|location=Sequence derived from alignment at M-pyrifera_M_contig77802:25..324- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig77802:25..324- >mRNA_M-pyrifera_M_contig77802.18305.1 ID=mRNA_M-pyrifera_M_contig77802.18305.1|Name=mRNA_M-pyrifera_M_contig77802.18305.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=600bp|location=Sequence derived from alignment at M-pyrifera_M_contig77802:25..324- (Macrocystis pyrifera P11B4 male)back to top |