mRNA_M-pyrifera_M_contig77802.18305.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig77802.18305.1
Unique NamemRNA_M-pyrifera_M_contig77802.18305.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig77802.18305.1 vs. uniprot
Match: A0A059Q2Y9_9POAL (RING-type domain-containing protein n=1 Tax=Saccharum hybrid cultivar R570 TaxID=131158 RepID=A0A059Q2Y9_9POAL)

HSP 1 Score: 82.4 bits (202), Expect = 1.370e-16
Identity = 45/103 (43.69%), Postives = 56/103 (54.37%), Query Frame = 1
Query:    1 RRRGXXXXXXXXRGGEVEEPRVTPYLRIIAMPMDHYNAKEHGEDE---ECAICLANFKKGEEMRRLP-CNHRFHPECLQRWLESSTTCPLCKQSVLRPQPEEA 297
            RRR          GG V    V P L + A+P+  Y A   G  E   EC++CLA  + GEE R LP C H FH EC+  WL S TTCPLC+ +V +P PE +
Sbjct:   80 RRRRRGDGTAGSNGGGVRTRGVDPDL-LRALPVTVYRAAAPGSKEDAAECSVCLAELQDGEEARFLPRCGHGFHAECVDMWLASHTTCPLCRLTVSKPDPESS 181          
BLAST of mRNA_M-pyrifera_M_contig77802.18305.1 vs. uniprot
Match: A0A1A9VZT9_9MUSC (RING-type domain-containing protein n=2 Tax=Glossina brevipalpis TaxID=37001 RepID=A0A1A9VZT9_9MUSC)

HSP 1 Score: 78.6 bits (192), Expect = 1.810e-16
Identity = 30/68 (44.12%), Postives = 48/68 (70.59%), Query Frame = 1
Query:   76 LRIIAMPMDHYNAK-EHGEDEECAICLANFKKGEEMRRLPCNHRFHPECLQRWLESSTTCPLCKQSVL 276
            ++I  +P + YN +  +G+   CAIC+ +F   E +R LPCNHRFH EC+ +WL+S++TCP+C+  V+
Sbjct:   72 VKINMLPSNEYNIEMSNGDQLSCAICINDFLSKEIIRTLPCNHRFHVECIDKWLQSNSTCPMCRARVI 139          
BLAST of mRNA_M-pyrifera_M_contig77802.18305.1 vs. uniprot
Match: A0A7S0QVM1_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0QVM1_9CHLO)

HSP 1 Score: 77.8 bits (190), Expect = 2.200e-16
Identity = 34/79 (43.04%), Postives = 48/79 (60.76%), Query Frame = 1
Query:   61 RVTPYLRIIAMPMDHYNAKEHGED--EECAICLANFKKGEEMRRLPCNHRFHPECLQRWLESSTTCPLCKQSVLRPQPE 291
            R+TP   + A+P+  Y   E GE+  E C ICL +F KG+++RRLPC H FH  C+  WL   + CP+CK  + R + E
Sbjct:   43 RLTP-SEVKAIPVVEYEGAEEGEEGAELCTICLDDFAKGDQLRRLPCRHHFHVTCIDEWLGRRSMCPVCKHDLSRARRE 120          
BLAST of mRNA_M-pyrifera_M_contig77802.18305.1 vs. uniprot
Match: A0A836J098_9ROSI (E3 ubiquitin-protein ligase XERICO n=2 Tax=Salix suchowensis TaxID=1278906 RepID=A0A836J098_9ROSI)

HSP 1 Score: 79.0 bits (193), Expect = 2.990e-16
Identity = 37/72 (51.39%), Postives = 46/72 (63.89%), Query Frame = 1
Query:   73 YLRII--AMPMDHYNAKE-HGEDEECAICLANFKKGEEMRRLPCNHRFHPECLQRWLESS-TTCPLCKQSVL 276
            YL ++  A P  HY+ K    +  ECA+CL+ F KGE +RRL CNH FH ECL RWL+    TCPLC+  VL
Sbjct:   53 YLSLVEKANPAIHYSEKPTRKQSRECAVCLSEFMKGERVRRLRCNHTFHKECLDRWLQQYLATCPLCRTRVL 124          
BLAST of mRNA_M-pyrifera_M_contig77802.18305.1 vs. uniprot
Match: A0A835CYV7_9MAGN (RING-type domain-containing protein n=2 Tax=Tetracentron sinense TaxID=13715 RepID=A0A835CYV7_9MAGN)

HSP 1 Score: 78.2 bits (191), Expect = 4.380e-16
Identity = 34/71 (47.89%), Postives = 49/71 (69.01%), Query Frame = 1
Query:   73 YLRIIA--MPMDHYNAKEHGEDEECAICLANFKKGEEMRRLPCNHRFHPECLQRWLE-SSTTCPLCKQSVL 276
            YL +I   +P   Y ++   +  ECA+CL+NF++GE++R L CNH FH +CL +WL+  S TCPLC+ SVL
Sbjct:   22 YLALIEDKIPTFRYRSESTPDLIECAVCLSNFREGEKIRELKCNHIFHKDCLDKWLQHDSATCPLCRSSVL 92          
BLAST of mRNA_M-pyrifera_M_contig77802.18305.1 vs. uniprot
Match: A0A2G5VNG8_9PELO (RING-type domain-containing protein n=2 Tax=Caenorhabditis TaxID=6237 RepID=A0A2G5VNG8_9PELO)

HSP 1 Score: 81.6 bits (200), Expect = 5.620e-16
Identity = 36/87 (41.38%), Postives = 54/87 (62.07%), Query Frame = 1
Query:   40 GGEVEEPRVTPYLRIIAMPMDHYNAKEHGEDEE--CAICLANFKKGEEMRRLPCNHRFHPECLQRWLESSTTCPLCKQSVLR-PQPE 291
            G E++ P       I     +   AK+ GE+E+  C +CL NF+ GE +R+LPCNH FHPEC+ +WL+ +  CP+C++ + R P PE
Sbjct:  407 GLEIDVPIGASQTDIDKYTNETKYAKKEGEEEDDTCTVCLNNFEAGESIRKLPCNHLFHPECIYKWLDINKKCPMCREEIDRKPVPE 493          
BLAST of mRNA_M-pyrifera_M_contig77802.18305.1 vs. uniprot
Match: A0A835CYW4_9MAGN (RING-type domain-containing protein n=1 Tax=Tetracentron sinense TaxID=13715 RepID=A0A835CYW4_9MAGN)

HSP 1 Score: 77.8 bits (190), Expect = 5.650e-16
Identity = 34/71 (47.89%), Postives = 49/71 (69.01%), Query Frame = 1
Query:   73 YLRIIAM--PMDHYNAKEHGEDEECAICLANFKKGEEMRRLPCNHRFHPECLQRWLE-SSTTCPLCKQSVL 276
            YL +I +  P   Y ++   +  ECA+CL+NF++GE++R L CNH FH +CL +WL+  S TCPLC+ SVL
Sbjct:   50 YLALIEIKIPTFRYRSESTPDLIECAVCLSNFREGEKIRELKCNHIFHKDCLDKWLQHDSPTCPLCRSSVL 120          
BLAST of mRNA_M-pyrifera_M_contig77802.18305.1 vs. uniprot
Match: A0A834WGF5_9FABA (E3 ubiquitin-protein ligase RING1-like n=1 Tax=Senna tora TaxID=362788 RepID=A0A834WGF5_9FABA)

HSP 1 Score: 76.6 bits (187), Expect = 8.430e-16
Identity = 28/64 (43.75%), Postives = 41/64 (64.06%), Query Frame = 1
Query:   82 IIAMPMDHYNAKEHGEDEECAICLANFKKGEEMRRLPCNHRFHPECLQRWLESSTTCPLCKQSV 273
            +I  P  H +     E  EC ICLA ++ G+ ++ LPCNHRFH +CL++WL    TCPLC+ ++
Sbjct:   63 VIYQPPSHASDTTTDEQTECIICLATYESGDRLKVLPCNHRFHGDCLEKWLTDHATCPLCRYNL 126          
BLAST of mRNA_M-pyrifera_M_contig77802.18305.1 vs. uniprot
Match: B9H582_POPTR (RING-type domain-containing protein n=2 Tax=Populus TaxID=3689 RepID=B9H582_POPTR)

HSP 1 Score: 77.4 bits (189), Expect = 8.730e-16
Identity = 36/74 (48.65%), Postives = 46/74 (62.16%), Query Frame = 1
Query:   67 TPYLRIIAM--PMDHYNAK-EHGEDEECAICLANFKKGEEMRRLPCNHRFHPECLQRWLESS-TTCPLCKQSVL 276
            T YL +I    P  HY+ K    +  ECA+CL+ F KGE +R+L CNH FH ECL +WL+    TCPLC+  VL
Sbjct:   51 TQYLSLIEKTNPAIHYSEKFSRQQSRECAVCLSGFMKGERVRKLRCNHTFHKECLDKWLQQYLATCPLCRTRVL 124          
BLAST of mRNA_M-pyrifera_M_contig77802.18305.1 vs. uniprot
Match: UPI00057B3E19 (probable E3 ubiquitin-protein ligase XERICO n=1 Tax=Populus euphratica TaxID=75702 RepID=UPI00057B3E19)

HSP 1 Score: 77.4 bits (189), Expect = 8.730e-16
Identity = 41/92 (44.57%), Postives = 55/92 (59.78%), Query Frame = 1
Query:   40 GGEVEEP----RV--TPYLRIIAM--PMDHYNAK-EHGEDEECAICLANFKKGEEMRRLPCNHRFHPECLQRWLESS-TTCPLCKQSVLRPQ 285
            G EV  P    R+  + YL II    P  HY+ K    +  ECA+CL+ F +GE +R+L C+H FH ECL +WL+ S  TCPLC+ +VL  Q
Sbjct:   36 GSEVTNPDKLFRIISSQYLNIIEKTNPTLHYSEKISRAQYRECAVCLSEFTEGERVRKLKCDHTFHQECLDKWLQQSMATCPLCRTTVLPDQ 127          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig77802.18305.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A059Q2Y9_9POAL1.370e-1643.69RING-type domain-containing protein n=1 Tax=Saccha... [more]
A0A1A9VZT9_9MUSC1.810e-1644.12RING-type domain-containing protein n=2 Tax=Glossi... [more]
A0A7S0QVM1_9CHLO2.200e-1643.04Hypothetical protein (Fragment) n=1 Tax=Pyramimona... [more]
A0A836J098_9ROSI2.990e-1651.39E3 ubiquitin-protein ligase XERICO n=2 Tax=Salix s... [more]
A0A835CYV7_9MAGN4.380e-1647.89RING-type domain-containing protein n=2 Tax=Tetrac... [more]
A0A2G5VNG8_9PELO5.620e-1641.38RING-type domain-containing protein n=2 Tax=Caenor... [more]
A0A835CYW4_9MAGN5.650e-1647.89RING-type domain-containing protein n=1 Tax=Tetrac... [more]
A0A834WGF5_9FABA8.430e-1643.75E3 ubiquitin-protein ligase RING1-like n=1 Tax=Sen... [more]
B9H582_POPTR8.730e-1648.65RING-type domain-containing protein n=2 Tax=Populu... [more]
UPI00057B3E198.730e-1644.57probable E3 ubiquitin-protein ligase XERICO n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig77802contigM-pyrifera_M_contig77802:25..324 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeNematoda
Seed ortholog score78.6
Seed ortholog evalue1.9e-12
Seed eggNOG ortholog6238.CBG13603
Preferred nametoe-4
KEGG koko:K10635
Hectar predicted targeting categoryother localisation
EggNOG free text desc.RING-like zinc finger
EggNOG OGs1KX0D@119089,39SE1@33154,3BBW1@33208,3D0DW@33213,40EP5@6231,4108P@6236,KOG0800@1,KOG0800@2759
EC2.3.2.27
COG Functional cat.O
Best tax levelRhabditida
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Exons1
Model size300
Cds size300
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816679.3828955-CDS-M-pyrifera_M_contig77802:24..3241622816679.3828955-CDS-M-pyrifera_M_contig77802:24..324Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77802 25..324 -
1692278115.2133691-CDS-M-pyrifera_M_contig77802:24..3241692278115.2133691-CDS-M-pyrifera_M_contig77802:24..324Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77802 25..324 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig77802.18305.1prot_M-pyrifera_M_contig77802.18305.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig77802 25..324 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig77802.18305.1

>prot_M-pyrifera_M_contig77802.18305.1 ID=prot_M-pyrifera_M_contig77802.18305.1|Name=mRNA_M-pyrifera_M_contig77802.18305.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=100bp
RRRGGGGGGGGGRGGEVEEPRVTPYLRIIAMPMDHYNAKEHGEDEECAIC
LANFKKGEEMRRLPCNHRFHPECLQRWLESSTTCPLCKQSVLRPQPEEA*
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mRNA from alignment at M-pyrifera_M_contig77802:25..324-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig77802.18305.1 ID=mRNA_M-pyrifera_M_contig77802.18305.1|Name=mRNA_M-pyrifera_M_contig77802.18305.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=300bp|location=Sequence derived from alignment at M-pyrifera_M_contig77802:25..324- (Macrocystis pyrifera P11B4 male)
AGGAGACGTGGTGGGGGTGGTGGTGGGGGTGGTGGAAGGGGTGGGGAGGT GGAGGAACCTAGAGTGACGCCCTATTTGAGGATCATAGCAATGCCTATGG ATCACTACAACGCGAAAGAACATGGCGAAGACGAAGAATGTGCCATTTGC CTCGCAAACTTCAAGAAAGGAGAAGAGATGAGGAGGCTTCCATGCAACCA CAGGTTCCACCCAGAATGCCTCCAGAGGTGGCTCGAATCCTCCACCACCT GCCCCTTGTGCAAGCAATCAGTACTGCGCCCTCAACCAGAAGAAGCGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig77802:25..324-

>mRNA_M-pyrifera_M_contig77802.18305.1 ID=mRNA_M-pyrifera_M_contig77802.18305.1|Name=mRNA_M-pyrifera_M_contig77802.18305.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=600bp|location=Sequence derived from alignment at M-pyrifera_M_contig77802:25..324- (Macrocystis pyrifera P11B4 male)
AGGAGACGTGGTGGGGGTGGTGGTGGGGGTGGTGGAAGGGGTGGGGAGGT
GGAGGAACCTAGAGTGACGCCCTATTTGAGGATCATAGCAATGCCTATGG
ATCACTACAACGCGAAAGAACATGGCGAAGACGAAGAATGTGCCATTTGC
CTCGCAAACTTCAAGAAAGGAGAAGAGATGAGGAGGCTTCCATGCAACCA
CAGGTTCCACCCAGAATGCCTCCAGAGGTGGCTCGAATCCTCCACCACCT
GCCCCTTGTGCAAGCAATCAGTACTGCGCCCTCAACCAGAAGAAGCGTAA
AGGAGACGTGGTGGGGGTGGTGGTGGGGGTGGTGGAAGGGGTGGGGAGGT
GGAGGAACCTAGAGTGACGCCCTATTTGAGGATCATAGCAATGCCTATGG
ATCACTACAACGCGAAAGAACATGGCGAAGACGAAGAATGTGCCATTTGC
CTCGCAAACTTCAAGAAAGGAGAAGAGATGAGGAGGCTTCCATGCAACCA
CAGGTTCCACCCAGAATGCCTCCAGAGGTGGCTCGAATCCTCCACCACCT
GCCCCTTGTGCAAGCAATCAGTACTGCGCCCTCAACCAGAAGAAGCGTAA
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