mRNA_M-pyrifera_M_contig77737.18287.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig77737.18287.1
Unique NamemRNA_M-pyrifera_M_contig77737.18287.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig77737.18287.1 vs. uniprot
Match: UPI001458E649 (FYVE, RhoGEF and PH domain-containing protein 6-like n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI001458E649)

HSP 1 Score: 49.3 bits (116), Expect = 2.300e-5
Identity = 20/42 (47.62%), Postives = 26/42 (61.90%), Query Frame = 1
Query:    1 HHCRACGKVFCEYCTQFRFKLKAQETKGGVTCGPHRMCSDCY 126
            HHCRACGKV C YC+ ++  LK    K G      R+C++CY
Sbjct: 1221 HHCRACGKVLCSYCSMYKVPLKYLNGKEG------RVCNECY 1256          
BLAST of mRNA_M-pyrifera_M_contig77737.18287.1 vs. uniprot
Match: UPI001F5FE51D (uncharacterized protein LOC124721160 isoform X1 n=5 Tax=Schistocerca TaxID=7008 RepID=UPI001F5FE51D)

HSP 1 Score: 48.5 bits (114), Expect = 4.310e-5
Identity = 21/46 (45.65%), Postives = 28/46 (60.87%), Query Frame = 1
Query:    1 HHCRACGKVFCEYCTQFRFKLKAQETKGGVTCGPHRMCSDCYTSVV 138
            HHCRACGKV C  C+ FR  L+ +  +      P R+C DCY S++
Sbjct: 1262 HHCRACGKVVCSNCSDFRAPLQYKRFQ------PDRVCVDCYESLL 1301          
BLAST of mRNA_M-pyrifera_M_contig77737.18287.1 vs. uniprot
Match: A0A8C4N6P0_EPTBU (Uncharacterized protein n=1 Tax=Eptatretus burgeri TaxID=7764 RepID=A0A8C4N6P0_EPTBU)

HSP 1 Score: 48.1 bits (113), Expect = 5.890e-5
Identity = 20/45 (44.44%), Postives = 27/45 (60.00%), Query Frame = 1
Query:    1 HHCRACGKVFCEYCTQFRFKLKAQETKGGVTCGPHRMCSDCYTSV 135
            HHCRACGK+ C+ C+Q RF LK    K      P R+C  C+ ++
Sbjct: 1091 HHCRACGKIICQACSQHRFPLKYLHDK------PERVCDLCFDAL 1129          
BLAST of mRNA_M-pyrifera_M_contig77737.18287.1 vs. uniprot
Match: A0A267EED2_9PLAT (FYVE-type domain-containing protein n=3 Tax=Macrostomum lignano TaxID=282301 RepID=A0A267EED2_9PLAT)

HSP 1 Score: 47.8 bits (112), Expect = 6.670e-5
Identity = 20/46 (43.48%), Postives = 28/46 (60.87%), Query Frame = 1
Query:    1 HHCRACGKVFCEYCTQFRFKLKAQETKGGVTCGPHRMCSDCYTSVV 138
            HHCR CG + C+ C+  ++ L AQ  K      P R+CS CYTS++
Sbjct:  154 HHCRRCGHLVCQSCSNRKWVLPAQSKK------PQRICSSCYTSLL 193          
BLAST of mRNA_M-pyrifera_M_contig77737.18287.1 vs. uniprot
Match: A0A1I8GJY0_9PLAT (Uncharacterized protein n=1 Tax=Macrostomum lignano TaxID=282301 RepID=A0A1I8GJY0_9PLAT)

HSP 1 Score: 47.8 bits (112), Expect = 6.860e-5
Identity = 20/46 (43.48%), Postives = 28/46 (60.87%), Query Frame = 1
Query:    1 HHCRACGKVFCEYCTQFRFKLKAQETKGGVTCGPHRMCSDCYTSVV 138
            HHCR CG + C+ C+  ++ L AQ  K      P R+CS CYTS++
Sbjct:  161 HHCRRCGHLVCQSCSNRKWVLPAQSKK------PQRICSSCYTSLL 200          
BLAST of mRNA_M-pyrifera_M_contig77737.18287.1 vs. uniprot
Match: D2VBG6_NAEGR (Predicted protein n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2VBG6_NAEGR)

HSP 1 Score: 47.8 bits (112), Expect = 8.060e-5
Identity = 20/53 (37.74%), Postives = 28/53 (52.83%), Query Frame = 1
Query:    1 HHCRACGKVFCEYCTQFRFKLKAQETKGGVTCGPHRMCSDCYTSVVLNTTPLS 159
            HHCR CGK+FC  C+  + K K +E K        R C DC+  + +   PL+
Sbjct:  568 HHCRFCGKIFCNLCSSKKVKRKEKEEK--------RSCDDCFNFLSIEFAPLN 612          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig77737.18287.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
UPI001458E6492.300e-547.62FYVE, RhoGEF and PH domain-containing protein 6-li... [more]
UPI001F5FE51D4.310e-545.65uncharacterized protein LOC124721160 isoform X1 n=... [more]
A0A8C4N6P0_EPTBU5.890e-544.44Uncharacterized protein n=1 Tax=Eptatretus burgeri... [more]
A0A267EED2_9PLAT6.670e-543.48FYVE-type domain-containing protein n=3 Tax=Macros... [more]
A0A1I8GJY0_9PLAT6.860e-543.48Uncharacterized protein n=1 Tax=Macrostomum lignan... [more]
D2VBG6_NAEGR8.060e-537.74Predicted protein n=1 Tax=Naegleria gruberi TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig77737contigM-pyrifera_M_contig77737:2..163 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size162
Cds size162
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816678.428261-CDS-M-pyrifera_M_contig77737:1..1631622816678.428261-CDS-M-pyrifera_M_contig77737:1..163Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77737 2..163 +
1692278114.6056411-CDS-M-pyrifera_M_contig77737:1..1631692278114.6056411-CDS-M-pyrifera_M_contig77737:1..163Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77737 2..163 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig77737.18287.1prot_M-pyrifera_M_contig77737.18287.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig77737 2..163 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig77737.18287.1

>prot_M-pyrifera_M_contig77737.18287.1 ID=prot_M-pyrifera_M_contig77737.18287.1|Name=mRNA_M-pyrifera_M_contig77737.18287.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=54bp
HHCRACGKVFCEYCTQFRFKLKAQETKGGVTCGPHRMCSDCYTSVVLNTT
PLS*
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mRNA from alignment at M-pyrifera_M_contig77737:2..163+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig77737.18287.1 ID=mRNA_M-pyrifera_M_contig77737.18287.1|Name=mRNA_M-pyrifera_M_contig77737.18287.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=162bp|location=Sequence derived from alignment at M-pyrifera_M_contig77737:2..163+ (Macrocystis pyrifera P11B4 male)
CACCACTGCCGGGCATGCGGAAAGGTGTTCTGTGAATACTGCACCCAGTT CCGCTTCAAGCTCAAAGCTCAAGAGACGAAGGGTGGTGTCACCTGCGGCC CCCATCGTATGTGCTCGGATTGCTACACAAGCGTCGTTCTCAATACAACA CCTCTCTCGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig77737:2..163+

>mRNA_M-pyrifera_M_contig77737.18287.1 ID=mRNA_M-pyrifera_M_contig77737.18287.1|Name=mRNA_M-pyrifera_M_contig77737.18287.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=324bp|location=Sequence derived from alignment at M-pyrifera_M_contig77737:2..163+ (Macrocystis pyrifera P11B4 male)
CACCACTGCCGGGCATGCGGAAAGGTGTTCTGTGAATACTGCACCCAGTT
CCGCTTCAAGCTCAAAGCTCAAGAGACGAAGGGTGGTGTCACCTGCGGCC
CCCATCGTATGTGCTCGGATTGCTACACAAGCGTCGTTCTCAATACAACA
CCTCTCTCGTAGCACCACTGCCGGGCATGCGGAAAGGTGTTCTGTGAATA
CTGCACCCAGTTCCGCTTCAAGCTCAAAGCTCAAGAGACGAAGGGTGGTG
TCACCTGCGGCCCCCATCGTATGTGCTCGGATTGCTACACAAGCGTCGTT
CTCAATACAACACCTCTCTCGTAG
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