mRNA_M-pyrifera_M_contig77707.18283.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig77707.18283.1
Unique NamemRNA_M-pyrifera_M_contig77707.18283.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig77707.18283.1 vs. uniprot
Match: A0A8J1Y563_OWEFU (Ofus.G15574 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1Y563_OWEFU)

HSP 1 Score: 70.5 bits (171), Expect = 4.810e-12
Identity = 49/162 (30.25%), Postives = 79/162 (48.77%), Query Frame = 1 
Query:    4 NHSSEFFLRARYVYDRELQAIRQTEEVEADEERGFFDELYLFKTRKMYSTDLRTKECRVHDIPSNFPFPEHVVPEEAEYFGPLTIG--VERDEVLVNSFHLRDEREEGYDIFHVTRPAPGTDFCGFVSHDHFSNATGYTTFRFFNVTMGAS-PSEFTPPSEC 480
            +H+ +F  RA+  YD   +  R+TE V  + +  F+D L L K R  +  D+RTK+C   ++   +PF    +PE A  +G   IG  +    VL+N +      +  +            D C  V   ++ N   YT++ F++VT+G S P+ F PPS C
Sbjct:   35 DHTDDFSSRAKLSYDAFGERSRETETVYMNGKEAFYDILRLHKERVEFVVDIRTKKCERREL--TYPFRPFEIPENARSYGEAYIGGSLLGSGVLINQWEANMPNDAKW------TGQWAIDGCIPVYDHYWHNYVNYTSYHFYDVTLGISDPNVFIPPSTC 188
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BLAST of mRNA_M-pyrifera_M_contig77707.18283.1 vs. uniprot
Match: A0A1S3JUV3_LINUN (mammalian ependymin-related protein 1 n=2 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3JUV3_LINUN)

HSP 1 Score: 64.7 bits (156), Expect = 7.600e-10
Identity = 55/160 (34.38%), Postives = 77/160 (48.12%), Query Frame = 1 
Query:   10 SSEFFLRARYVYDRELQAIRQTEEVEADEERGFFDELYLFKTRKMYSTDLRTKECRVHDIPSNFPFPEHVVPEEAEYFGPLTIG--VERDEVLVNSFHLRDEREEGYDIFHVTRPAPGTDFCGFVSHDHFSNATGYTTFRFFNVTMGAS-PSEFTPPSEC 480
            + +F  RA   YD   Q IR+ EEV  +E+R ++D L+L      Y  +LRTK C V  +    PF +  +P  A+  G   IG  V  D VLV+ +    E+   Y     T PA     C  VS   + ++ G     F+NV +G S P+ F PP EC
Sbjct:   38 TKKFAERAHISYDAINQRIRKVEEVYFNEDREYYDVLWLHNEGMEYRLNLRTKMCNVTALTR--PFRKIGIPANAKSGGEAYIGSAVANDGVLVSLWSETTEQGAKY-YGSWTYPA-----CVPVSDYFYDSSVGLVQTHFYNVEVGISDPNRFIPPMEC 189
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig77707.18283.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A8J1Y563_OWEFU4.810e-1230.25Ofus.G15574 protein n=1 Tax=Owenia fusiformis TaxI... [more]
A0A1S3JUV3_LINUN7.600e-1034.38mammalian ependymin-related protein 1 n=2 Tax=Ling... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig77707contigM-pyrifera_M_contig77707:244..729 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score78.2
Seed ortholog evalue4e-12
Seed eggNOG ortholog7739.XP_002596848.1
Preferred nameEPDR1
Hectar predicted targeting categoryother localisation
GOsGO:0000323,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005773,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.cell-matrix adhesion
EggNOG OGs2CFST@1,2QQ8T@2759,39UI5@33154,3BJPQ@33208,3D0ZW@33213,47ZNV@7711
COG Functional cat.S
Best tax levelChordata
Best eggNOG OGNA|NA|NA
Exons1
Model size486
Cds size486
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816678.157869-CDS-M-pyrifera_M_contig77707:243..7291622816678.157869-CDS-M-pyrifera_M_contig77707:243..729Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77707 244..729 -
1692278114.4307952-CDS-M-pyrifera_M_contig77707:243..7291692278114.4307952-CDS-M-pyrifera_M_contig77707:243..729Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77707 244..729 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig77707.18283.1prot_M-pyrifera_M_contig77707.18283.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig77707 244..729 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig77707.18283.1

>prot_M-pyrifera_M_contig77707.18283.1 ID=prot_M-pyrifera_M_contig77707.18283.1|Name=mRNA_M-pyrifera_M_contig77707.18283.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=162bp
QNHSSEFFLRARYVYDRELQAIRQTEEVEADEERGFFDELYLFKTRKMYS
TDLRTKECRVHDIPSNFPFPEHVVPEEAEYFGPLTIGVERDEVLVNSFHL
RDEREEGYDIFHVTRPAPGTDFCGFVSHDHFSNATGYTTFRFFNVTMGAS
PSEFTPPSECS*
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mRNA from alignment at M-pyrifera_M_contig77707:244..729-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig77707.18283.1 ID=mRNA_M-pyrifera_M_contig77707.18283.1|Name=mRNA_M-pyrifera_M_contig77707.18283.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=486bp|location=Sequence derived from alignment at M-pyrifera_M_contig77707:244..729- (Macrocystis pyrifera P11B4 male)
CAGAACCATTCAAGTGAATTCTTCCTTCGTGCCCGCTACGTGTACGATCG
TGAACTTCAAGCCATCCGTCAGACGGAAGAAGTCGAGGCGGACGAAGAAC
GCGGTTTCTTCGACGAACTCTACCTTTTCAAGACCCGCAAGATGTACTCC
ACGGATCTTCGCACCAAGGAATGCCGCGTGCATGACATCCCATCCAACTT
CCCATTCCCAGAGCACGTGGTTCCCGAAGAAGCAGAATACTTTGGCCCGC
TCACCATTGGTGTGGAGCGTGACGAAGTCCTCGTCAACTCCTTCCACTTG
CGTGATGAACGTGAAGAAGGATACGACATCTTCCATGTTACCCGCCCAGC
CCCAGGGACGGATTTCTGCGGCTTTGTCTCGCATGACCATTTCTCCAACG
CCACCGGGTACACCACCTTCCGTTTCTTCAACGTCACCATGGGCGCGTCA
CCATCTGAATTCACCCCACCATCCGAGTGCTCCTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig77707:244..729-

>mRNA_M-pyrifera_M_contig77707.18283.1 ID=mRNA_M-pyrifera_M_contig77707.18283.1|Name=mRNA_M-pyrifera_M_contig77707.18283.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=972bp|location=Sequence derived from alignment at M-pyrifera_M_contig77707:244..729- (Macrocystis pyrifera P11B4 male)
CAGAACCATTCAAGTGAATTCTTCCTTCGTGCCCGCTACGTGTACGATCG
TGAACTTCAAGCCATCCGTCAGACGGAAGAAGTCGAGGCGGACGAAGAAC
GCGGTTTCTTCGACGAACTCTACCTTTTCAAGACCCGCAAGATGTACTCC
ACGGATCTTCGCACCAAGGAATGCCGCGTGCATGACATCCCATCCAACTT
CCCATTCCCAGAGCACGTGGTTCCCGAAGAAGCAGAATACTTTGGCCCGC
TCACCATTGGTGTGGAGCGTGACGAAGTCCTCGTCAACTCCTTCCACTTG
CGTGATGAACGTGAAGAAGGATACGACATCTTCCATGTTACCCGCCCAGC
CCCAGGGACGGATTTCTGCGGCTTTGTCTCGCATGACCATTTCTCCAACG
CCACCGGGTACACCACCTTCCGTTTCTTCAACGTCACCATGGGCGCGTCA
CCATCTGAATTCACCCCACCATCCGAGTGCTCCTAACAGAACCATTCAAG
TGAATTCTTCCTTCGTGCCCGCTACGTGTACGATCGTGAACTTCAAGCCA
TCCGTCAGACGGAAGAAGTCGAGGCGGACGAAGAACGCGGTTTCTTCGAC
GAACTCTACCTTTTCAAGACCCGCAAGATGTACTCCACGGATCTTCGCAC
CAAGGAATGCCGCGTGCATGACATCCCATCCAACTTCCCATTCCCAGAGC
ACGTGGTTCCCGAAGAAGCAGAATACTTTGGCCCGCTCACCATTGGTGTG
GAGCGTGACGAAGTCCTCGTCAACTCCTTCCACTTGCGTGATGAACGTGA
AGAAGGATACGACATCTTCCATGTTACCCGCCCAGCCCCAGGGACGGATT
TCTGCGGCTTTGTCTCGCATGACCATTTCTCCAACGCCACCGGGTACACC
ACCTTCCGTTTCTTCAACGTCACCATGGGCGCGTCACCATCTGAATTCAC
CCCACCATCCGAGTGCTCCTAA
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