mRNA_M-pyrifera_M_contig77559.18251.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig77559.18251.1
Unique NamemRNA_M-pyrifera_M_contig77559.18251.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig77559.18251.1 vs. uniprot
Match: D7G1R6_ECTSI (Ubiquitin thioesterase OTU1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1R6_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 1.180e-20
Identity = 45/48 (93.75%), Postives = 47/48 (97.92%), Query Frame = 1 
Query:    1 MVRRIIDADNSCLFNAVGYALRRKRKVGSELRQMITEAVRASPDVYNE 144
            MVRRIIDADNSCLFNAVGYALRRKRKVG+ELRQMITEAVR SP+VYNE
Sbjct:  197 MVRRIIDADNSCLFNAVGYALRRKRKVGTELRQMITEAVRGSPEVYNE 244
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BLAST of mRNA_M-pyrifera_M_contig77559.18251.1 vs. uniprot
Match: K8Z3P6_NANGC (Ubiquitin thioesterase OTU1 (Fragment) n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8Z3P6_NANGC)

HSP 1 Score: 70.9 bits (172), Expect = 3.720e-13
Identity = 31/48 (64.58%), Postives = 40/48 (83.33%), Query Frame = 1 
Query:    1 MVRRIIDADNSCLFNAVGYALRRKRKVGSELRQMITEAVRASPDVYNE 144
            MVRR+IDADNSCLFNAVGY + + R++G +LR++I + VR SPDVY E
Sbjct:  165 MVRRVIDADNSCLFNAVGYCMEKNRRIGPKLRKIIADCVRNSPDVYTE 212
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BLAST of mRNA_M-pyrifera_M_contig77559.18251.1 vs. uniprot
Match: A0A388MBY1_CHABU (Ubiquitin thioesterase OTU1 n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388MBY1_CHABU)

HSP 1 Score: 65.9 bits (159), Expect = 2.510e-11
Identity = 30/48 (62.50%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:    1 MVRRIIDADNSCLFNAVGYALRRKRKVGSELRQMITEAVRASPDVYNE 144
            +VRR+ID+DNSCLFNAVGY +   R   SELRQ+I   V +SPDVYN+
Sbjct:    5 VVRRVIDSDNSCLFNAVGYVMEHNRMKASELRQVIAAVVMSSPDVYND 52
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BLAST of mRNA_M-pyrifera_M_contig77559.18251.1 vs. uniprot
Match: E1ZSA6_CHLVA (Ubiquitin thioesterase OTU1 n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZSA6_CHLVA)

HSP 1 Score: 62.0 bits (149), Expect = 4.500e-10
Identity = 30/48 (62.50%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:    1 MVRRIIDADNSCLFNAVGYALRRKRKVGSELRQMITEAVRASPDVYNE 144
            +VRRIID+DNSCLFNAVGY   R RK+   LRQ+I +AV A P  +NE
Sbjct:   95 VVRRIIDSDNSCLFNAVGYVTERSRKLAPRLRQVIADAVLADPFEWNE 142
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BLAST of mRNA_M-pyrifera_M_contig77559.18251.1 vs. uniprot
Match: A0A2P6NQK6_9EUKA (Ubiquitin thioesterase OTU1 n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NQK6_9EUKA)

HSP 1 Score: 61.2 bits (147), Expect = 9.490e-10
Identity = 27/49 (55.10%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:    1 MVRRIIDADNSCLFNAVGYALR-RKRKVGSELRQMITEAVRASPDVYNE 144
            +VRR++D+DNSCLFN++GY L  R RKVG  LR++I + + + PD YNE
Sbjct:  124 VVRRVVDSDNSCLFNSIGYVLEGRDRKVGPRLRKIIVDTIASDPDEYNE 172
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BLAST of mRNA_M-pyrifera_M_contig77559.18251.1 vs. uniprot
Match: A0A835ZCY8_9STRA (Ubiquitin thioesterase OTU1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCY8_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.440e-9
Identity = 28/49 (57.14%), Postives = 40/49 (81.63%), Query Frame = 1 
Query:    4 VRRIIDADNSCLFNAVGYALRRKR--KVGSELRQMITEAVRASPDVYNE 144
            VRR++DADNSCLF +VGY + R+R  K G  +R++IT+AVRA+PD ++E
Sbjct:  201 VRRVVDADNSCLFTSVGYCVTRERGEKGGGRMRRVITQAVRAAPDTFSE 249
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BLAST of mRNA_M-pyrifera_M_contig77559.18251.1 vs. uniprot
Match: A0A835T751_CHLIN (Ubiquitin thioesterase OTU1 n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835T751_CHLIN)

HSP 1 Score: 60.1 bits (144), Expect = 2.700e-9
Identity = 25/48 (52.08%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:    1 MVRRIIDADNSCLFNAVGYALRRKRKVGSELRQMITEAVRASPDVYNE 144
            +VRR++D+DNSCLFNAVGY +   R   + LR+++ +AVRA P  +NE
Sbjct:  207 VVRRVVDSDNSCLFNAVGYVMEGSRSTAARLRRVVADAVRADPFTFNE 254
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BLAST of mRNA_M-pyrifera_M_contig77559.18251.1 vs. uniprot
Match: A0A6V1QB17_HETAK (Ubiquitin thioesterase OTU1 n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1QB17_HETAK)

HSP 1 Score: 58.9 bits (141), Expect = 2.940e-9
Identity = 27/47 (57.45%), Postives = 32/47 (68.09%), Query Frame = 1 
Query:    4 VRRIIDADNSCLFNAVGYALRRKRKVGSELRQMITEAVRASPDVYNE 144
            VRR+IDADNSCLFNAVGY   R RK    LR++I   V  +PD + E
Sbjct:    6 VRRVIDADNSCLFNAVGYVFERNRKAAPRLRRLIANTVLGNPDKWTE 52
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BLAST of mRNA_M-pyrifera_M_contig77559.18251.1 vs. uniprot
Match: A0A835VSG5_9CHLO (Ubiquitin thioesterase OTU1 n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835VSG5_9CHLO)

HSP 1 Score: 59.3 bits (142), Expect = 5.070e-9
Identity = 25/48 (52.08%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:    1 MVRRIIDADNSCLFNAVGYALRRKRKVGSELRQMITEAVRASPDVYNE 144
            +VRR+ID+DNSCLFNAVGY +   R   + LR+++ +AVR+ P  +NE
Sbjct:  214 VVRRVIDSDNSCLFNAVGYVMEGSRSTAARLRRVVADAVRSDPFTFNE 261
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BLAST of mRNA_M-pyrifera_M_contig77559.18251.1 vs. uniprot
Match: A0A2K3DFG9_CHLRE (Ubiquitin thioesterase OTU1 n=2 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3DFG9_CHLRE)

HSP 1 Score: 58.9 bits (141), Expect = 6.920e-9
Identity = 24/48 (50.00%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:    1 MVRRIIDADNSCLFNAVGYALRRKRKVGSELRQMITEAVRASPDVYNE 144
            +VRR++D+DNSCLFNAVGY +   R   + LR+++ +AVR+ P  +NE
Sbjct:  210 VVRRVVDSDNSCLFNAVGYVMEGSRSTAARLRRVVADAVRSDPFTFNE 257
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig77559.18251.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1R6_ECTSI1.180e-2093.75Ubiquitin thioesterase OTU1 n=1 Tax=Ectocarpus sil... [more]
K8Z3P6_NANGC3.720e-1364.58Ubiquitin thioesterase OTU1 (Fragment) n=3 Tax=Mon... [more]
A0A388MBY1_CHABU2.510e-1162.50Ubiquitin thioesterase OTU1 n=1 Tax=Chara braunii ... [more]
E1ZSA6_CHLVA4.500e-1062.50Ubiquitin thioesterase OTU1 n=1 Tax=Chlorella vari... [more]
A0A2P6NQK6_9EUKA9.490e-1055.10Ubiquitin thioesterase OTU1 n=1 Tax=Planoprotostel... [more]
A0A835ZCY8_9STRA1.440e-957.14Ubiquitin thioesterase OTU1 n=1 Tax=Tribonema minu... [more]
A0A835T751_CHLIN2.700e-952.08Ubiquitin thioesterase OTU1 n=1 Tax=Chlamydomonas ... [more]
A0A6V1QB17_HETAK2.940e-957.45Ubiquitin thioesterase OTU1 n=2 Tax=Heterosigma ak... [more]
A0A835VSG5_9CHLO5.070e-952.08Ubiquitin thioesterase OTU1 n=1 Tax=Chlamydomonas ... [more]
A0A2K3DFG9_CHLRE6.920e-950.00Ubiquitin thioesterase OTU1 n=2 Tax=Chlamydomonas ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig77559contigM-pyrifera_M_contig77559:620..763 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.8
Seed ortholog evalue4.6e-17
Seed eggNOG ortholog2880.D7G1R6
KEGG koko:K13719,ko:K15083
KEGG Pathwayko04141,map04141
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0004843,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006986,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009056,GO:0009057,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0016579,GO:0016787,GO:0019538,GO:0019783,GO:0019941,GO:0023052,GO:0030163,GO:0030433,GO:0030968,GO:0033554,GO:0034620,GO:0034976,GO:0035966,GO:0035967,GO:0036211,GO:0036459,GO:0036503,GO:0042221,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051603,GO:0051716,GO:0065007,GO:0070011,GO:0070646,GO:0070647,GO:0070887,GO:0071310,GO:0071704,GO:0101005,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901698
EggNOG free text desc.protein K27-linked deubiquitination
EggNOG OGsCOG5539@1,KOG3288@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko03400
Exons1
Model size144
Cds size144
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816676.3708-CDS-M-pyrifera_M_contig77559:619..7631622816676.3708-CDS-M-pyrifera_M_contig77559:619..763Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77559 620..763 -
1692278113.3050895-CDS-M-pyrifera_M_contig77559:619..7631692278113.3050895-CDS-M-pyrifera_M_contig77559:619..763Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77559 620..763 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig77559.18251.1prot_M-pyrifera_M_contig77559.18251.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig77559 620..763 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig77559.18251.1

>prot_M-pyrifera_M_contig77559.18251.1 ID=prot_M-pyrifera_M_contig77559.18251.1|Name=mRNA_M-pyrifera_M_contig77559.18251.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=48bp
MVRRIIDADNSCLFNAVGYALRRKRKVGSELRQMITEAVRASPDVYNE
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mRNA from alignment at M-pyrifera_M_contig77559:620..763-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig77559.18251.1 ID=mRNA_M-pyrifera_M_contig77559.18251.1|Name=mRNA_M-pyrifera_M_contig77559.18251.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=144bp|location=Sequence derived from alignment at M-pyrifera_M_contig77559:620..763- (Macrocystis pyrifera P11B4 male)
ATGGTGAGACGTATTATCGACGCGGACAACTCTTGCCTCTTCAACGCTGT
GGGCTACGCCCTCCGACGCAAGCGCAAGGTGGGGTCAGAGCTGCGACAGA
TGATCACGGAGGCAGTTCGGGCGAGCCCCGATGTTTACAACGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig77559:620..763-

>mRNA_M-pyrifera_M_contig77559.18251.1 ID=mRNA_M-pyrifera_M_contig77559.18251.1|Name=mRNA_M-pyrifera_M_contig77559.18251.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=288bp|location=Sequence derived from alignment at M-pyrifera_M_contig77559:620..763- (Macrocystis pyrifera P11B4 male)
ATGGTGAGACGTATTATCGACGCGGACAACTCTTGCCTCTTCAACGCTGT
GGGCTACGCCCTCCGACGCAAGCGCAAGGTGGGGTCAGAGCTGCGACAGA
TGATCACGGAGGCAGTTCGGGCGAGCCCCGATGTTTACAACGAGATGGTG
AGACGTATTATCGACGCGGACAACTCTTGCCTCTTCAACGCTGTGGGCTA
CGCCCTCCGACGCAAGCGCAAGGTGGGGTCAGAGCTGCGACAGATGATCA
CGGAGGCAGTTCGGGCGAGCCCCGATGTTTACAACGAG
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