mRNA_M-pyrifera_M_contig77520.18244.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig77520.18244.1
Unique NamemRNA_M-pyrifera_M_contig77520.18244.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig77520.18244.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig77520contigM-pyrifera_M_contig77520:707..1003 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size297
Cds size294
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816675.9750051-UTR-M-pyrifera_M_contig77520:706..7091622816675.9750051-UTR-M-pyrifera_M_contig77520:706..709Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig77520 707..709 +
1692278113.0581944-UTR-M-pyrifera_M_contig77520:706..7091692278113.0581944-UTR-M-pyrifera_M_contig77520:706..709Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig77520 707..709 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816675.9892352-CDS-M-pyrifera_M_contig77520:709..10031622816675.9892352-CDS-M-pyrifera_M_contig77520:709..1003Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77520 710..1003 +
1692278113.0696127-CDS-M-pyrifera_M_contig77520:709..10031692278113.0696127-CDS-M-pyrifera_M_contig77520:709..1003Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77520 710..1003 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig77520.18244.1prot_M-pyrifera_M_contig77520.18244.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig77520 710..1003 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig77520.18244.1

>prot_M-pyrifera_M_contig77520.18244.1 ID=prot_M-pyrifera_M_contig77520.18244.1|Name=mRNA_M-pyrifera_M_contig77520.18244.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=98bp
MMLKIRFFLSVRGNAYRGRELDYTIYPDLPTNIACVFLAHILASDSESVC
EVLMPYIKTAVPGTGTVAFATQDSSGFFNPNHFFVNKDSIYNILEILE
back to top

mRNA from alignment at M-pyrifera_M_contig77520:707..1003+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig77520.18244.1 ID=mRNA_M-pyrifera_M_contig77520.18244.1|Name=mRNA_M-pyrifera_M_contig77520.18244.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=297bp|location=Sequence derived from alignment at M-pyrifera_M_contig77520:707..1003+ (Macrocystis pyrifera P11B4 male)
GAAATGATGCTAAAAATTCGTTTTTTCTTGTCAGTTAGAGGTAATGCGTA
TAGAGGCAGGGAACTCGATTACACTATATATCCTGATTTACCAACCAATA
TTGCTTGCGTATTCTTGGCACACATTCTTGCCAGTGATTCTGAATCTGTC
TGTGAAGTGTTGATGCCATATATTAAAACTGCTGTTCCAGGGACTGGCAC
GGTCGCATTTGCTACGCAAGACAGTAGTGGTTTTTTTAATCCAAACCATT
TTTTCGTAAACAAGGATTCAATTTATAACATTTTAGAGATTTTAGAA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig77520:707..1003+

>mRNA_M-pyrifera_M_contig77520.18244.1 ID=mRNA_M-pyrifera_M_contig77520.18244.1|Name=mRNA_M-pyrifera_M_contig77520.18244.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=588bp|location=Sequence derived from alignment at M-pyrifera_M_contig77520:707..1003+ (Macrocystis pyrifera P11B4 male)
ATGATGCTAAAAATTCGTTTTTTCTTGTCAGTTAGAGGTAATGCGTATAG
AGGCAGGGAACTCGATTACACTATATATCCTGATTTACCAACCAATATTG
CTTGCGTATTCTTGGCACACATTCTTGCCAGTGATTCTGAATCTGTCTGT
GAAGTGTTGATGCCATATATTAAAACTGCTGTTCCAGGGACTGGCACGGT
CGCATTTGCTACGCAAGACAGTAGTGGTTTTTTTAATCCAAACCATTTTT
TCGTAAACAAGGATTCAATTTATAACATTTTAGAGATTTTAGAAATGATG
CTAAAAATTCGTTTTTTCTTGTCAGTTAGAGGTAATGCGTATAGAGGCAG
GGAACTCGATTACACTATATATCCTGATTTACCAACCAATATTGCTTGCG
TATTCTTGGCACACATTCTTGCCAGTGATTCTGAATCTGTCTGTGAAGTG
TTGATGCCATATATTAAAACTGCTGTTCCAGGGACTGGCACGGTCGCATT
TGCTACGCAAGACAGTAGTGGTTTTTTTAATCCAAACCATTTTTTCGTAA
ACAAGGATTCAATTTATAACATTTTAGAGATTTTAGAA
back to top