mRNA_M-pyrifera_M_contig77291.18212.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig77291.18212.1
Unique NamemRNA_M-pyrifera_M_contig77291.18212.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig77291.18212.1 vs. uniprot
Match: A0A8K0NV15_LADFU (Uncharacterized protein n=1 Tax=Ladona fulva TaxID=123851 RepID=A0A8K0NV15_LADFU)

HSP 1 Score: 61.2 bits (147), Expect = 2.280e-8
Identity = 37/78 (47.44%), Postives = 47/78 (60.26%), Query Frame = 1 
Query:   13 ETSMANCFGLRTLHTYFSVPFLRLRAAKLEAELARAAMEYRAALLEVDAYLEA--ADYDGFLE--ARERRKSMRNNGV 234
            E+SM N FGLR LH + +VPFLRL+   LEA+LA  A E    + E+D Y  +  ADYD FLE    +RR    N G+
Sbjct:  230 ESSMRNGFGLRLLHRFLNVPFLRLQRDTLEAQLATNARETELVIAELDLYQSSDEADYDKFLENLTSKRRAMAENTGI 307
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BLAST of mRNA_M-pyrifera_M_contig77291.18212.1 vs. uniprot
Match: UPI001ED8BF77 (rab-like protein 6 isoform X1 n=2 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED8BF77)

HSP 1 Score: 60.5 bits (145), Expect = 4.230e-8
Identity = 37/78 (47.44%), Postives = 46/78 (58.97%), Query Frame = 1 
Query:   13 ETSMANCFGLRTLHTYFSVPFLRLRAAKLEAELARAAMEYRAALLEVDAYLEA--ADYDGFLE--ARERRKSMRNNGV 234
            E+SM N FGLR LH + +VPFLRL+   LEA+LA  A E    + E+D Y  +  ADYD FLE     RR +  N G 
Sbjct:  225 ESSMRNGFGLRLLHRFLNVPFLRLQRDTLEAQLATNARETELTIAELDLYQSSDEADYDKFLENLTSRRRAAAENTGA 302
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BLAST of mRNA_M-pyrifera_M_contig77291.18212.1 vs. uniprot
Match: A0A7S1KMN4_9EUKA (Hypothetical protein n=1 Tax=Percolomonas cosmopolitus TaxID=63605 RepID=A0A7S1KMN4_9EUKA)

HSP 1 Score: 58.9 bits (141), Expect = 1.490e-7
Identity = 27/65 (41.54%), Postives = 44/65 (67.69%), Query Frame = 1 
Query:    1 IAVFETSMANCFGLRTLHTYFSVPFLRLRAAKLEAELARAAMEYRAALLEVDAYLEAADYDGFLE 195
            I + ETSM NC+GL++L+TYF++PF +L+   ++ EL R   E +    +VD  L+A+DY+  L+
Sbjct:  295 IRIIETSMKNCYGLKSLYTYFNIPFCKLKVDTVQKELKRLKEELKENRSQVDTTLQASDYNQHLK 359
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BLAST of mRNA_M-pyrifera_M_contig77291.18212.1 vs. uniprot
Match: A0A6G0XI28_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XI28_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 7.100e-7
Identity = 27/61 (44.26%), Postives = 38/61 (62.30%), Query Frame = 1 
Query:   10 FETSMANCFGLRTLHTYFSVPFLRLRAAKLEAELARAAMEYRAALLEVDAYLEAADYDGFL 192
            FE SM NC+GL++LHTY S+PFL L+ A ++ +L     E   A L+VDA +    Y  F+
Sbjct:  216 FEASMTNCYGLKSLHTYLSIPFLHLKVATVKQQLRLVETELANAKLDVDATIAGQKYSHFV 276
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BLAST of mRNA_M-pyrifera_M_contig77291.18212.1 vs. uniprot
Match: X6NML3_RETFI (Uncharacterized protein n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6NML3_RETFI)

HSP 1 Score: 55.5 bits (132), Expect = 2.380e-6
Identity = 26/61 (42.62%), Postives = 39/61 (63.93%), Query Frame = 1 
Query:   13 ETSMANCFGLRTLHTYFSVPFLRLRAAKLEAELARAAMEYRAALLEVDAYLEAADYDGFLE 195
            E S+ +CFG++ L+T+ SVPFLR++   LE EL R   E   + LEVD  ++  DY  +L+
Sbjct:   12 EVSLKDCFGMKELYTFLSVPFLRMKCKLLETELDRVRFELDQSQLEVDTLIKNHDYASYLQ 72
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BLAST of mRNA_M-pyrifera_M_contig77291.18212.1 vs. uniprot
Match: A0A397BDP5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397BDP5_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 1.430e-5
Identity = 24/61 (39.34%), Postives = 36/61 (59.02%), Query Frame = 1 
Query:   10 FETSMANCFGLRTLHTYFSVPFLRLRAAKLEAELARAAMEYRAALLEVDAYLEAADYDGFL 192
            FE S++NC+GL+ LHTY S+PFL L+ A ++ +L     +   A L VD  +    Y  F+
Sbjct:  235 FEASLSNCYGLKALHTYLSIPFLHLKVATVKQQLKLLETDLATAKLNVDTTISTQKYSHFV 295
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BLAST of mRNA_M-pyrifera_M_contig77291.18212.1 vs. uniprot
Match: A0A397ARK3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397ARK3_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 1.480e-5
Identity = 24/61 (39.34%), Postives = 36/61 (59.02%), Query Frame = 1 
Query:   10 FETSMANCFGLRTLHTYFSVPFLRLRAAKLEAELARAAMEYRAALLEVDAYLEAADYDGFL 192
            FE S++NC+GL+ LHTY S+PFL L+ A ++ +L     +   A L VD  +    Y  F+
Sbjct:  235 FEASLSNCYGLKALHTYLSIPFLHLKVATVKQQLKLLETDLATAKLNVDTTISTQKYSHFV 295
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BLAST of mRNA_M-pyrifera_M_contig77291.18212.1 vs. uniprot
Match: A0A3L6V3R5_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6V3R5_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 1.520e-5
Identity = 24/61 (39.34%), Postives = 36/61 (59.02%), Query Frame = 1 
Query:   10 FETSMANCFGLRTLHTYFSVPFLRLRAAKLEAELARAAMEYRAALLEVDAYLEAADYDGFL 192
            FE S++NC+GL+ LHTY S+PFL L+ A ++ +L     +   A L VD  +    Y  F+
Sbjct:    5 FEASLSNCYGLKALHTYLSIPFLHLKVATVKQQLKLLEADLATAKLNVDTTISTQKYSHFV 65
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BLAST of mRNA_M-pyrifera_M_contig77291.18212.1 vs. uniprot
Match: W4G3Q4_9STRA (Uncharacterized protein n=9 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G3Q4_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 1.570e-5
Identity = 24/61 (39.34%), Postives = 36/61 (59.02%), Query Frame = 1 
Query:   10 FETSMANCFGLRTLHTYFSVPFLRLRAAKLEAELARAAMEYRAALLEVDAYLEAADYDGFL 192
            FE S++NC+GL+ LHTY S+PFL L+ A ++ +L     +   A L VD  +    Y  F+
Sbjct:  235 FEASLSNCYGLKALHTYLSIPFLHLKVATVKQQLKLLETDLATAKLNVDTTISTQKYSHFV 295
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig77291.18212.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A8K0NV15_LADFU2.280e-847.44Uncharacterized protein n=1 Tax=Ladona fulva TaxID... [more]
UPI001ED8BF774.230e-847.44rab-like protein 6 isoform X1 n=2 Tax=Ischnura ele... [more]
A0A7S1KMN4_9EUKA1.490e-741.54Hypothetical protein n=1 Tax=Percolomonas cosmopol... [more]
A0A6G0XI28_9STRA7.100e-744.26Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
X6NML3_RETFI2.380e-642.62Uncharacterized protein n=1 Tax=Reticulomyxa filos... [more]
A0A397BDP5_9STRA1.430e-539.34Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A397ARK3_9STRA1.480e-539.34Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A3L6V3R5_9STRA1.520e-539.34Uncharacterized protein (Fragment) n=2 Tax=Aphanom... [more]
W4G3Q4_9STRA1.570e-539.34Uncharacterized protein n=9 Tax=Aphanomyces astaci... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig77291contigM-pyrifera_M_contig77291:477..860 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size384
Cds size363
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816674.0148764-CDS-M-pyrifera_M_contig77291:476..8391622816674.0148764-CDS-M-pyrifera_M_contig77291:476..839Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77291 477..839 -
1692278111.888127-CDS-M-pyrifera_M_contig77291:476..8391692278111.888127-CDS-M-pyrifera_M_contig77291:476..839Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77291 477..839 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816674.0292025-UTR-M-pyrifera_M_contig77291:839..8601622816674.0292025-UTR-M-pyrifera_M_contig77291:839..860Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig77291 840..860 -
1692278111.8978448-UTR-M-pyrifera_M_contig77291:839..8601692278111.8978448-UTR-M-pyrifera_M_contig77291:839..860Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig77291 840..860 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig77291.18212.1prot_M-pyrifera_M_contig77291.18212.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig77291 477..839 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig77291.18212.1

>prot_M-pyrifera_M_contig77291.18212.1 ID=prot_M-pyrifera_M_contig77291.18212.1|Name=mRNA_M-pyrifera_M_contig77291.18212.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=121bp
MANCFGLRTLHTYFSVPFLRLRAAKLEAELARAAMEYRAALLEVDAYLEA
ADYDGFLEARERRKSMRNNGVGSHGGRDESAGVPSPTSSQPPTPSSSSSS
SSSSSSSSSSPTSQHAPASSP
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mRNA from alignment at M-pyrifera_M_contig77291:477..860-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig77291.18212.1 ID=mRNA_M-pyrifera_M_contig77291.18212.1|Name=mRNA_M-pyrifera_M_contig77291.18212.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=384bp|location=Sequence derived from alignment at M-pyrifera_M_contig77291:477..860- (Macrocystis pyrifera P11B4 male)
ATTGCTGTGTTTGAGACTTCTATGGCGAATTGCTTTGGATTACGAACATT
GCATACGTATTTCTCTGTTCCATTTTTGAGACTTCGTGCTGCAAAGCTTG
AAGCAGAACTTGCAAGAGCAGCTATGGAATACAGAGCTGCCTTGTTAGAA
GTCGATGCGTATTTGGAAGCTGCTGATTATGATGGATTTCTGGAAGCAAG
AGAACGTAGAAAGTCAATGAGGAACAATGGAGTTGGTTCACATGGTGGAC
GGGATGAGTCAGCTGGAGTTCCCTCTCCAACATCCTCACAACCACCAACC
CCATCCTCCTCCTCCTCCTCCTCCTCTTCCTCCTCCTCTTCCTCCTCATC
CCCCACCTCACAACACGCTCCAGCTTCATCTCCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig77291:477..860-

>mRNA_M-pyrifera_M_contig77291.18212.1 ID=mRNA_M-pyrifera_M_contig77291.18212.1|Name=mRNA_M-pyrifera_M_contig77291.18212.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=726bp|location=Sequence derived from alignment at M-pyrifera_M_contig77291:477..860- (Macrocystis pyrifera P11B4 male)
ATGGCGAATTGCTTTGGATTACGAACATTGCATACGTATTTCTCTGTTCC
ATTTTTGAGACTTCGTGCTGCAAAGCTTGAAGCAGAACTTGCAAGAGCAG
CTATGGAATACAGAGCTGCCTTGTTAGAAGTCGATGCGTATTTGGAAGCT
GCTGATTATGATGGATTTCTGGAAGCAAGAGAACGTAGAAAGTCAATGAG
GAACAATGGAGTTGGTTCACATGGTGGACGGGATGAGTCAGCTGGAGTTC
CCTCTCCAACATCCTCACAACCACCAACCCCATCCTCCTCCTCCTCCTCC
TCCTCTTCCTCCTCCTCTTCCTCCTCATCCCCCACCTCACAACACGCTCC
AGCTTCATCTCCTATGGCGAATTGCTTTGGATTACGAACATTGCATACGT
ATTTCTCTGTTCCATTTTTGAGACTTCGTGCTGCAAAGCTTGAAGCAGAA
CTTGCAAGAGCAGCTATGGAATACAGAGCTGCCTTGTTAGAAGTCGATGC
GTATTTGGAAGCTGCTGATTATGATGGATTTCTGGAAGCAAGAGAACGTA
GAAAGTCAATGAGGAACAATGGAGTTGGTTCACATGGTGGACGGGATGAG
TCAGCTGGAGTTCCCTCTCCAACATCCTCACAACCACCAACCCCATCCTC
CTCCTCCTCCTCCTCCTCTTCCTCCTCCTCTTCCTCCTCATCCCCCACCT
CACAACACGCTCCAGCTTCATCTCCT
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