mRNA_M-pyrifera_M_contig77237.18201.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig77237.18201.1
Unique NamemRNA_M-pyrifera_M_contig77237.18201.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig77237.18201.1 vs. uniprot
Match: A0A662YGA1_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YGA1_9STRA)

HSP 1 Score: 116 bits (290), Expect = 4.800e-31
Identity = 53/96 (55.21%), Postives = 69/96 (71.88%), Query Frame = 1 
Query:    1 GPHLYQTEPSGEFFEYKAHAIGSRSQAGRTYLESHVSEFSGLGRDALVQHALRALRGCTDSEQTLTVDNTTIGVVGKDQPFQRIDGDDVAPFLAAL 288
            G HLYQT PSG ++EYK  AIG+RSQ+ RTYLE H   F  LG+D L+QHAL+ +RGC   +Q LT  N TI VVG DQPF+ I+G ++ P++ A+
Sbjct:   52 GVHLYQTCPSGNYYEYKGIAIGARSQSARTYLEKHFESFPNLGKDELIQHALQGMRGCLQGDQELTATNITIAVVGVDQPFKIIEGAELQPYIDAV 147
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BLAST of mRNA_M-pyrifera_M_contig77237.18201.1 vs. uniprot
Match: K3WEQ8_GLOUD (Proteasome subunit alpha type n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WEQ8_GLOUD)

HSP 1 Score: 117 bits (294), Expect = 1.150e-30
Identity = 53/96 (55.21%), Postives = 71/96 (73.96%), Query Frame = 1 
Query:    1 GPHLYQTEPSGEFFEYKAHAIGSRSQAGRTYLESHVSEFSGLGRDALVQHALRALRGCTDSEQTLTVDNTTIGVVGKDQPFQRIDGDDVAPFLAAL 288
            G HLYQT PSG ++EYKA AIG+RSQ+ RTYLE H   F  LG+D L+QHAL+ +RGC   +Q LT  + TI +VG DQPF+ I+GD++ P++ A+
Sbjct:  141 GVHLYQTCPSGNYYEYKAIAIGARSQSARTYLEKHFESFVNLGKDELIQHALQGIRGCLQGDQELTAASITIAIVGVDQPFKIIEGDELQPYIDAV 236
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BLAST of mRNA_M-pyrifera_M_contig77237.18201.1 vs. uniprot
Match: A0A8K1FH57_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FH57_PYTOL)

HSP 1 Score: 115 bits (289), Expect = 6.430e-30
Identity = 50/96 (52.08%), Postives = 70/96 (72.92%), Query Frame = 1 
Query:    1 GPHLYQTEPSGEFFEYKAHAIGSRSQAGRTYLESHVSEFSGLGRDALVQHALRALRGCTDSEQTLTVDNTTIGVVGKDQPFQRIDGDDVAPFLAAL 288
            G HLY+T PSG +FEYKAHAIG+RSQ+ RTYLE H   F+ L  D L+ H+L+A+RGC   +Q LT +N  + +VG +QPF+ I+G D+ P++ A+
Sbjct:  141 GVHLYETCPSGNYFEYKAHAIGARSQSARTYLEKHFESFANLSADELIHHSLQAIRGCLQGDQELTSENVAVAIVGVNQPFKIIEGTDLQPYIDAV 236
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BLAST of mRNA_M-pyrifera_M_contig77237.18201.1 vs. uniprot
Match: H3G8I4_PHYRM (Proteasome subunit alpha type n=22 Tax=Peronosporaceae TaxID=4777 RepID=H3G8I4_PHYRM)

HSP 1 Score: 113 bits (282), Expect = 4.960e-29
Identity = 52/93 (55.91%), Postives = 66/93 (70.97%), Query Frame = 1 
Query:    1 GPHLYQTEPSGEFFEYKAHAIGSRSQAGRTYLESHVSEFSGLGRDALVQHALRALRGCTDSEQTLTVDNTTIGVVGKDQPFQRIDGDDVAPFL 279
            G HLYQT PSG ++EYK  AIG+RSQ+ RTYLE H   F  LG+D L+ HAL+ +RGC   +Q LT  N TI VVG DQPF+ I+G ++ P+L
Sbjct:  141 GVHLYQTCPSGNYYEYKGIAIGARSQSARTYLEKHFESFPTLGKDELIHHALQGVRGCLQGDQELTASNVTIAVVGVDQPFKIIEGAELQPYL 233
[Close]
BLAST of mRNA_M-pyrifera_M_contig77237.18201.1 vs. uniprot
Match: A0A6S9F1R3_9STRA (Proteasome subunit alpha type n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9F1R3_9STRA)

HSP 1 Score: 113 bits (282), Expect = 1.130e-28
Identity = 54/96 (56.25%), Postives = 66/96 (68.75%), Query Frame = 1 
Query:    1 GPHLYQTEPSGEFFEYKAHAIGSRSQAGRTYLESHVSEFSGLGRDALVQHALRALRGCTDSEQTLTVDNTTIGVVGKDQPFQRIDGDDVAPFLAAL 288
            GPHLYQT PSG  +EY A AIG+RSQ+GRTYLE H    +   RD L+ HALRAL GC   +  LT DN +I VVGKD+ F  I+GD++ P+L  L
Sbjct:  141 GPHLYQTCPSGNLYEYYASAIGARSQSGRTYLEKHYETLNDASRDDLIMHALRALTGCVSGDVELTKDNGSIAVVGKDEKFTLIEGDELQPYLDRL 236
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BLAST of mRNA_M-pyrifera_M_contig77237.18201.1 vs. uniprot
Match: A0A7S2XQH4_9STRA (Proteasome subunit alpha type n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XQH4_9STRA)

HSP 1 Score: 109 bits (273), Expect = 2.220e-27
Identity = 53/96 (55.21%), Postives = 65/96 (67.71%), Query Frame = 1 
Query:    1 GPHLYQTEPSGEFFEYKAHAIGSRSQAGRTYLESHVSEFSGLGRDALVQHALRALRGCTDSEQTLTVDNTTIGVVGKDQPFQRIDGDDVAPFLAAL 288
            GPHLYQT PSG  +EY A AIG+RSQ+GRTYLE H   F    +D L+ HALRAL GC   +  LT DN +I VVGK + F  I+GD++ P+L  L
Sbjct:  142 GPHLYQTCPSGNIYEYYASAIGARSQSGRTYLEKHYESFEEASKDDLIMHALRALAGCVTGDGELTRDNGSIAVVGKGESFILIEGDELQPYLDRL 237
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BLAST of mRNA_M-pyrifera_M_contig77237.18201.1 vs. uniprot
Match: A0A067BZB1_SAPPC (Proteasome subunit alpha type n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067BZB1_SAPPC)

HSP 1 Score: 107 bits (268), Expect = 8.070e-27
Identity = 49/96 (51.04%), Postives = 66/96 (68.75%), Query Frame = 1 
Query:    1 GPHLYQTEPSGEFFEYKAHAIGSRSQAGRTYLESHVSEFSGLGRDALVQHALRALRGCTDSEQTLTVDNTTIGVVGKDQPFQRIDGDDVAPFLAAL 288
            GPHL+QT PSG ++EY A AIG+RSQ+ RTYLE H   F    +D L++HAL+ +RGC +  Q L+  N TI VVG DQ F  I+G D+ P++ A+
Sbjct:  142 GPHLFQTCPSGNYYEYNAIAIGARSQSARTYLEKHFETFPNSSKDDLIKHALQGIRGCLEGSQELSASNVTIAVVGADQKFILIEGADLQPYIDAV 237
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BLAST of mRNA_M-pyrifera_M_contig77237.18201.1 vs. uniprot
Match: A0A813CUP1_9DINO (PsmA1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813CUP1_9DINO)

HSP 1 Score: 108 bits (269), Expect = 1.030e-26
Identity = 50/96 (52.08%), Postives = 65/96 (67.71%), Query Frame = 1 
Query:    1 GPHLYQTEPSGEFFEYKAHAIGSRSQAGRTYLESHVSEFSGLGRDALVQHALRALRGCTDSEQTLTVDNTTIGVVGKDQPFQRIDGDDVAPFLAAL 288
            GPHLYQT+P+GEFFE+KA AIG+RSQ  ++YLE H   F     + L+QH L+AL GCT++++ LT  + TI  VG    F  +DG  VAPFL  L
Sbjct:  142 GPHLYQTDPAGEFFEWKAMAIGARSQTAKSYLEKHFETFEDASLEELIQHGLKALNGCTEADKELTAASVTIAFVGAGTKFTLVDGVGVAPFLQTL 237
[Close]
BLAST of mRNA_M-pyrifera_M_contig77237.18201.1 vs. uniprot
Match: A0A6G0W585_9STRA (Proteasome subunit alpha type n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W585_9STRA)

HSP 1 Score: 107 bits (267), Expect = 1.160e-26
Identity = 48/96 (50.00%), Postives = 66/96 (68.75%), Query Frame = 1 
Query:    1 GPHLYQTEPSGEFFEYKAHAIGSRSQAGRTYLESHVSEFSGLGRDALVQHALRALRGCTDSEQTLTVDNTTIGVVGKDQPFQRIDGDDVAPFLAAL 288
            GPHL+QT PSG ++EY   AIG+RSQ+ RTYLE H   F  LG+D L++HAL+ +RGC +  Q L+  N  I VVG + PF  I+G D+ P++ A+
Sbjct:  142 GPHLFQTCPSGNYYEYHGIAIGARSQSARTYLEKHFESFPPLGKDDLIKHALQGIRGCLEGNQELSSSNVAIAVVGANHPFTLIEGADLQPYIDAV 237
[Close]
BLAST of mRNA_M-pyrifera_M_contig77237.18201.1 vs. uniprot
Match: A0A4D9CTI6_9STRA (Proteasome subunit alpha type n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CTI6_9STRA)

HSP 1 Score: 107 bits (268), Expect = 1.210e-26
Identity = 50/96 (52.08%), Postives = 73/96 (76.04%), Query Frame = 1 
Query:    1 GPHLYQTEPSGEFFEYKAHAIGSRSQAGRTYLESHVSEFSGLGRDALVQHALRALRGCTDSEQTLTVDNTTIGVVGKDQPFQRIDGDDVAPFLAAL 288
            GPHLYQT+PSG ++EY A AIGSR+Q+G+TYLE + +EF  LG+D L++HAL+AL G T  ++ L+ DN ++ VVGKD P + I+G+ +  +L A+
Sbjct:  141 GPHLYQTDPSGAYYEYIAQAIGSRAQSGKTYLEKYHAEFESLGQDELIKHALKALSG-TAGDKELSKDNASVAVVGKDHPLEIIEGEALQRYLDAI 235
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig77237.18201.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A662YGA1_9STRA4.800e-3155.21Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
K3WEQ8_GLOUD1.150e-3055.21Proteasome subunit alpha type n=2 Tax=Pythiaceae T... [more]
A0A8K1FH57_PYTOL6.430e-3052.08Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
H3G8I4_PHYRM4.960e-2955.91Proteasome subunit alpha type n=22 Tax=Peronospora... [more]
A0A6S9F1R3_9STRA1.130e-2856.25Proteasome subunit alpha type n=1 Tax=Ditylum brig... [more]
A0A7S2XQH4_9STRA2.220e-2755.21Proteasome subunit alpha type n=1 Tax=Attheya sept... [more]
A0A067BZB1_SAPPC8.070e-2751.04Proteasome subunit alpha type n=3 Tax=Saprolegniac... [more]
A0A813CUP1_9DINO1.030e-2652.08PsmA1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2... [more]
A0A6G0W585_9STRA1.160e-2650.00Proteasome subunit alpha type n=1 Tax=Aphanomyces ... [more]
A0A4D9CTI6_9STRA1.210e-2652.08Proteasome subunit alpha type n=1 Tax=Nannochlorop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig77237contigM-pyrifera_M_contig77237:177..470 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.2
Seed ortholog evalue5.5e-25
Seed eggNOG ortholog115417.EPrPW00000016062
Preferred namePSMA1
KEGG koko:K02725,ko:K13141
KEGG Pathwayko03050,map03050
KEGG ModuleM00337,M00340
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000502,GO:0001530,GO:0001673,GO:0001703,GO:0002682,GO:0002683,GO:0002861,GO:0002862,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005839,GO:0005844,GO:0005856,GO:0005886,GO:0005911,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006996,GO:0006997,GO:0007088,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007289,GO:0007290,GO:0007291,GO:0007346,GO:0007349,GO:0007369,GO:0007370,GO:0008150,GO:0008152,GO:0008289,GO:0009056,GO:0009057,GO:0009506,GO:0009653,GO:0009790,GO:0009896,GO:0009987,GO:0010004,GO:0010498,GO:0010499,GO:0010564,GO:0010638,GO:0010965,GO:0012505,GO:0015630,GO:0016020,GO:0016043,GO:0016579,GO:0019538,GO:0019773,GO:0019941,GO:0019953,GO:0022412,GO:0022414,GO:0030054,GO:0030071,GO:0030154,GO:0030163,GO:0031331,GO:0031347,GO:0031348,GO:0031597,GO:0031974,GO:0031981,GO:0032101,GO:0032102,GO:0032270,GO:0032436,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034515,GO:0036211,GO:0042175,GO:0042221,GO:0043073,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043632,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044703,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0046685,GO:0048232,GO:0048468,GO:0048515,GO:0048518,GO:0048519,GO:0048522,GO:0048583,GO:0048585,GO:0048598,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0050727,GO:0050728,GO:0050776,GO:0050777,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051247,GO:0051603,GO:0051704,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0055044,GO:0062033,GO:0065007,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0071840,GO:0071944,GO:0080134,GO:0090068,GO:0097159,GO:0097367,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903052,GO:1903364,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:1990904,GO:2001252
EggNOG free text desc.Proteasome subunit alpha type
EggNOG OGs1MCPB@121069,COG0638@1,KOG0863@2759
Ec32 ortholog descriptionNucleophile aminohydrolases, N-terminal
Ec32 orthologEc-18_004030.1
EC3.4.25.1
COG Functional cat.O
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03041,ko03051,ko04147
Exons1
Model size294
Cds size294
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816673.579961-CDS-M-pyrifera_M_contig77237:176..4701622816673.579961-CDS-M-pyrifera_M_contig77237:176..470Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77237 177..470 +
1692278111.6987927-CDS-M-pyrifera_M_contig77237:176..4701692278111.6987927-CDS-M-pyrifera_M_contig77237:176..470Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77237 177..470 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig77237.18201.1prot_M-pyrifera_M_contig77237.18201.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig77237 177..470 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig77237.18201.1

>prot_M-pyrifera_M_contig77237.18201.1 ID=prot_M-pyrifera_M_contig77237.18201.1|Name=mRNA_M-pyrifera_M_contig77237.18201.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=98bp
GPHLYQTEPSGEFFEYKAHAIGSRSQAGRTYLESHVSEFSGLGRDALVQH
ALRALRGCTDSEQTLTVDNTTIGVVGKDQPFQRIDGDDVAPFLAALAE
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mRNA from alignment at M-pyrifera_M_contig77237:177..470+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig77237.18201.1 ID=mRNA_M-pyrifera_M_contig77237.18201.1|Name=mRNA_M-pyrifera_M_contig77237.18201.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=294bp|location=Sequence derived from alignment at M-pyrifera_M_contig77237:177..470+ (Macrocystis pyrifera P11B4 male)
GGTCCTCACTTGTACCAGACGGAGCCTAGCGGCGAGTTTTTCGAGTACAA
GGCGCATGCAATCGGGAGCCGGTCCCAGGCCGGTCGGACGTATTTGGAGA
GCCACGTGTCTGAGTTTTCCGGTCTGGGTCGGGATGCGTTGGTGCAACAC
GCGCTGCGGGCATTGCGGGGGTGCACCGACTCGGAGCAGACGCTGACGGT
GGACAACACCACCATTGGGGTGGTGGGCAAGGACCAGCCCTTCCAGAGAA
TCGACGGAGACGACGTGGCCCCATTCCTCGCAGCGCTTGCCGAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig77237:177..470+

>mRNA_M-pyrifera_M_contig77237.18201.1 ID=mRNA_M-pyrifera_M_contig77237.18201.1|Name=mRNA_M-pyrifera_M_contig77237.18201.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=588bp|location=Sequence derived from alignment at M-pyrifera_M_contig77237:177..470+ (Macrocystis pyrifera P11B4 male)
GGTCCTCACTTGTACCAGACGGAGCCTAGCGGCGAGTTTTTCGAGTACAA
GGCGCATGCAATCGGGAGCCGGTCCCAGGCCGGTCGGACGTATTTGGAGA
GCCACGTGTCTGAGTTTTCCGGTCTGGGTCGGGATGCGTTGGTGCAACAC
GCGCTGCGGGCATTGCGGGGGTGCACCGACTCGGAGCAGACGCTGACGGT
GGACAACACCACCATTGGGGTGGTGGGCAAGGACCAGCCCTTCCAGAGAA
TCGACGGAGACGACGTGGCCCCATTCCTCGCAGCGCTTGCCGAAGGTCCT
CACTTGTACCAGACGGAGCCTAGCGGCGAGTTTTTCGAGTACAAGGCGCA
TGCAATCGGGAGCCGGTCCCAGGCCGGTCGGACGTATTTGGAGAGCCACG
TGTCTGAGTTTTCCGGTCTGGGTCGGGATGCGTTGGTGCAACACGCGCTG
CGGGCATTGCGGGGGTGCACCGACTCGGAGCAGACGCTGACGGTGGACAA
CACCACCATTGGGGTGGTGGGCAAGGACCAGCCCTTCCAGAGAATCGACG
GAGACGACGTGGCCCCATTCCTCGCAGCGCTTGCCGAA
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