mRNA_M-pyrifera_M_contig77230.18200.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig77230.18200.1
Unique NamemRNA_M-pyrifera_M_contig77230.18200.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig77230.18200.1 vs. uniprot
Match: W7TPC8_9STRA (6-pyruvoyltetrahydropterin synthase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TPC8_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 2.180e-22
Identity = 56/138 (40.58%), Postives = 79/138 (57.25%), Query Frame = 1
Query:    1 VRLEGRELGEDGYLLDFGVVKAHMRALCKRLDERFLCPYRSPHMEVLLDGKEVGGEGGVIFPGEGSTLQLHCKCDGARLQMPGSDAVLLPIRHSSAEELSRFLANSLLSALSTP-LTAAGIHHLTVGVIETERQEALY 411
            VR+ G   G DGYL+DFG +K   RALCK L+ERFLCP RS  +++ +               EG  + L C+ DGA   +P +D  +LP+ HS+AEEL+++  + L ++ S   L + GIH L + V E  RQE  Y
Sbjct:   31 VRMRGTRRGHDGYLIDFGDIKLVTRALCKELNERFLCPTRSDVIQIDV---------------EGPRISLACE-DGALFVLPTADCAMLPVVHSTAEELAQYFWHRLTTSFSVDRLLSRGIHTLQIMVAEAPRQEGCY 152          
BLAST of mRNA_M-pyrifera_M_contig77230.18200.1 vs. uniprot
Match: A0A6H5J8E2_9PHAE (6-pyruvoyltetrahydropterin synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8E2_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 4.230e-22
Identity = 63/142 (44.37%), Postives = 85/142 (59.86%), Query Frame = 1
Query:    1 VRLEGRELGEDGYLLDFGVVKAHMRALCKRLDERFLCPYRSPHMEVLLDGKEVGGEGGVIFPGEGSTLQLHCKCDGARLQMPGSDAVLLPIRHSSAEELSRFLANSLLSALSTP-LTAAGIHHLTVGVIETERQEALYRVEV 423
            VRL G E+ EDGY++DFG+VK  MR LCK L+ERFLCP  S  +++ L G +V     VI           C+ DGA   +P  D  LLP+ +S+AEELS FL + LL   + P L + G+  + V V E  RQEA+YR ++
Sbjct:  205 VRLRG-EVCEDGYVVDFGIVKKVMRKLCKGLNERFLCPMESDALDITLTGSQV-----VIV----------CQ-DGATFVLPRDDCALLPLVNSTAEELSHFLFSRLLREFTLPYLHSRGVTEMDVSVAELPRQEAIYRGKI 329          
BLAST of mRNA_M-pyrifera_M_contig77230.18200.1 vs. uniprot
Match: A0A7R9UEV5_9STRA (6-pyruvoyltetrahydropterin synthase (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UEV5_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 8.930e-20
Identity = 57/139 (41.01%), Postives = 78/139 (56.12%), Query Frame = 1
Query:    1 VRLEGRELGEDGYLLDFGVVKAHMRALCKRLDERFLCPYRSPHMEVLLDGKEVGGEGGVIFPGEGSTLQLHCKCDGARLQMPGSDAVLLPIRHSSAEELSRFLANSLLSALSTP-LTAAGIHHLTVGVIETERQEALYR 414
            V L+G  LG DGY++DFG +K   R LCK L+ERF+CP  S  MEV L      GE  V+         L C+ DGA   +P  D  +LP+ HS+AEE+SRF   +L+   +   L A G+  + + V E   Q+A+YR
Sbjct:   94 VALKGSHLGPDGYVVDFGDIKKVTRRLCKELNERFICPMYSDVMEVEL------GEDQVV---------LRCE-DGAYFSLPRGDCAVLPLVHSTAEEISRFFWCNLVQEFTIEWLKARGVTAVEITVSEAASQQAVYR 216          
BLAST of mRNA_M-pyrifera_M_contig77230.18200.1 vs. uniprot
Match: A0A7S0FJA2_9STRA (6-pyruvoyltetrahydropterin synthase (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FJA2_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 1.220e-19
Identity = 56/137 (40.88%), Postives = 79/137 (57.66%), Query Frame = 1
Query:    1 VRLEG-RELGEDGYLLDFGVVKAHMRALCKRLDERFLCPYRSPHMEVLLDGKEVGGEGGVIFPGEGSTLQLHCKCDGARLQMPGSDAVLLPIRHSSAEELSRFLANSLLSALSTP-LTAAGIHHLTVGVIETERQEA 405
            VRL G R++G DGY+LDFG VKA  + +CK L+E F+CP RS  M +++   E    GG        T+ L C+ DG+    P  D  +LPI H++ EEL+ +L   +L AL++  L   G+H + V V E   QEA
Sbjct:   39 VRLLGSRKIGPDGYVLDFGCVKAVTKKICKDLNEHFICPMRSDVMAIVVKDDESCLNGG--------TITLTCE-DGSVFVFPKKDCAMLPIVHATTEELAIYLWGKILGALNSEYLVKRGMHTMEVTVAEAVGQEA 166          
BLAST of mRNA_M-pyrifera_M_contig77230.18200.1 vs. uniprot
Match: A0A7S3JNP3_9STRA (6-pyruvoyltetrahydropterin synthase n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JNP3_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 1.830e-19
Identity = 53/138 (38.41%), Postives = 77/138 (55.80%), Query Frame = 1
Query:    1 VRLEGRELGEDGYLLDFGVVKAHMRALCKRLDERFLCPYRSPHMEVLLDGKEVGGEGGVIFPGEGSTLQLHCKCDGARLQMPGSDAVLLPIRHSSAEELSRFLANSLLSALSTP-LTAAGIHHLTVGVIETERQEALY 411
            VR+ G    +DGY++DFG +K  +R +CK+L+ERFLCP  S  M++   G+ +               ++ C+ DGA   +P SD  +LPI HS+AEEL+  L   ++ A  T  L+A GI  L + V E   QEA Y
Sbjct:   86 VRMMGPVSNQDGYVIDFGEIKEVVRGVCKQLNERFLCPENSDVMKINRQGENI---------------RIDCE-DGASFSIPVSDCAMLPIVHSTAEELAALLWRRVIDAFGTERLSARGITALEISVAEAPSQEARY 207          
BLAST of mRNA_M-pyrifera_M_contig77230.18200.1 vs. uniprot
Match: A0A7S1FTD9_9STRA (6-pyruvoyltetrahydropterin synthase n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FTD9_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 3.140e-19
Identity = 61/146 (41.78%), Postives = 83/146 (56.85%), Query Frame = 1
Query:    1 VRLEG-RELGEDGYLLDFGVVKAHMRALCKRLDERFLCPYRSPHMEVLL---DGKEVGGEGGVIFPGEGSTLQLHCKCDGARLQMPGSDAVLLPIRHSSAEELSRFLANSLLSALSTP-LTAAGIHHLTVGVIETERQEALYRVEV 423
            VRL G R +  DGYLLDFG VK   R++CK L+E FLCP +S  + + L   DGKE+              +++ C+ DG    +P  D +LLPI HSSAEE++ +L + +L+ L  P L   GIH L V V E   Q A++R  V
Sbjct:   89 VRLIGSRRISSDGYLLDFGDVKKVTRSVCKELNEYFLCPMQSVVLTITLVKVDGKEM--------------VKIVCE-DGEIFLLPREDCLLLPIVHSSAEEMAIYLWSKILNGLDAPTLIRRGIHTLEVSVSEAIGQTAVFRYPV 219          
BLAST of mRNA_M-pyrifera_M_contig77230.18200.1 vs. uniprot
Match: A0A1E7F6Q8_9STRA (6-pyruvoyltetrahydropterin synthase (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F6Q8_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 1.250e-18
Identity = 53/140 (37.86%), Postives = 82/140 (58.57%), Query Frame = 1
Query:    1 VRLEG-RELGEDGYLLDFGVVKAHMRALCKRLDERFLCPYRSPHMEVLL---DGKEVGGEGGVIFPGEGSTLQLHCKCDGARLQMPGSDAVLLPIRHSSAEELSRFLANSLLSALSTP-LTAAGIHHLTVGVIETERQEA 405
            VRL G R++  DGY++DFG VKA ++ +CK+L+ERFLCP +S  +++ +   D   VG            ++ L C+ DGA+  MP  D  +LPI H++ EEL+ ++ + +L  L +  L   GIH + V + E   QEA
Sbjct:   39 VRLLGSRKISHDGYVMDFGDVKAVVKKVCKKLNERFLCPIKSDVIDIQIVQQDDVVVGNNSNKSNDCSSKSVILTCE-DGAKFVMPRDDCAMLPIVHATVEELAIYVWSEILIGLDSKILRQRGIHTMEVVMAEAPGQEA 177          
BLAST of mRNA_M-pyrifera_M_contig77230.18200.1 vs. uniprot
Match: A0A448ZDB1_9STRA (6-pyruvoyltetrahydropterin synthase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZDB1_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 2.750e-18
Identity = 54/143 (37.76%), Postives = 83/143 (58.04%), Query Frame = 1
Query:    1 VRLEG-RELGEDGYLLDFGVVKAHMRALCKRLDERFLCPYRSPHMEVLLDGKEVGGEGGVIFPGEGSTLQLHCKCDGARLQMPGSDAVLLPIRHSSAEELSRFLANSLLSALSTPLTAA-GIHHLTVGVIETERQEALYRVEV 423
            VRL G R++  DGY+LDFG VK  ++A+CK+L+ERFLCP +S  ++  +   E  G   V+         L C+ DG+R  +P  D  ++PI H++ EEL+ +    +L  L   L    GIH + V + E   QEA++R+E+
Sbjct:   52 VRLLGSRKICHDGYVLDFGDVKKVVKAVCKKLNERFLCPTKSDVIDTQIVDTENDGRKSVV---------LTCE-DGSRFVIPLDDCAMIPIVHATVEELAIYTWGEILDGLDPELLRRRGIHTMEVVMAEAPGQEAVFRLEI 184          
BLAST of mRNA_M-pyrifera_M_contig77230.18200.1 vs. uniprot
Match: B7FTA7_PHATC (6-pyruvoyltetrahydropterin synthase n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FTA7_PHATC)

HSP 1 Score: 85.1 bits (209), Expect = 4.510e-18
Identity = 51/137 (37.23%), Postives = 76/137 (55.47%), Query Frame = 1
Query:    1 VRLEGR-ELGEDGYLLDFGVVKAHMRALCKRLDERFLCPYRSPHMEVLLDGKEVGGEGGVIFPGEGSTLQLHCKCDGARLQMPGSDAVLLPIRHSSAEELSRFLANSLLSALSTP-LTAAGIHHLTVGVIETERQEA 405
            VRL GR ++G DGYL+DFG VK   + +CKR++E FLCP  S  +++  + + V               ++ C  DG     P +D V+LPI H++AEEL+ +L   +L+ L+   L   GIH + + V E   QEA
Sbjct:   43 VRLLGRRQIGADGYLIDFGCVKDVCKKVCKRINEHFLCPVHSDVLKITTENESV---------------RIEC-ADGTYFVFPAADCVMLPIFHATAEELAIYLYAEILNGLNADYLQKRGIHTMEIAVAEAIGQEA 163          
BLAST of mRNA_M-pyrifera_M_contig77230.18200.1 vs. uniprot
Match: A0A1Z5K4V3_FISSO (6-pyruvoyltetrahydropterin synthase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K4V3_FISSO)

HSP 1 Score: 85.5 bits (210), Expect = 1.600e-17
Identity = 50/143 (34.97%), Postives = 80/143 (55.94%), Query Frame = 1
Query:    1 VRLEGRE-LGEDGYLLDFGVVKAHMRALCKRLDERFLCPYRSPHMEVLLDGKEVGGEGGVIFPGEGSTLQLHCKCDGARLQMPGSDAVLLPIRHSSAEELSRFLANSLLSALSTP-LTAAGIHHLTVGVIETERQEALYRVEV 423
            VRL GR  LG DGY++DFG +KA  + +CK+L+E FLCP  S  +++  D                + +++ C+ DG+    P  D  +LPI H++ EE++ +L + +L  L++  L   GIH + V V E   Q+A +R E+
Sbjct:   45 VRLLGRRTLGADGYVIDFGNIKAVCKTVCKKLNEHFLCPMYSDVLKIESDDNT------------NTNIRITCQ-DGSSFSFPPQDCAMLPIVHATTEEIAIYLWSEILKGLNSQYLVQRGIHTMEVTVAEAPGQQATFRWEI 174          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig77230.18200.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W7TPC8_9STRA2.180e-2240.586-pyruvoyltetrahydropterin synthase n=1 Tax=Nannoc... [more]
A0A6H5J8E2_9PHAE4.230e-2244.376-pyruvoyltetrahydropterin synthase n=1 Tax=Ectoca... [more]
A0A7R9UEV5_9STRA8.930e-2041.016-pyruvoyltetrahydropterin synthase (Fragment) n=1... [more]
A0A7S0FJA2_9STRA1.220e-1940.886-pyruvoyltetrahydropterin synthase (Fragment) n=1... [more]
A0A7S3JNP3_9STRA1.830e-1938.416-pyruvoyltetrahydropterin synthase n=1 Tax=Aureou... [more]
A0A7S1FTD9_9STRA3.140e-1941.786-pyruvoyltetrahydropterin synthase n=1 Tax=Coreth... [more]
A0A1E7F6Q8_9STRA1.250e-1837.866-pyruvoyltetrahydropterin synthase (Fragment) n=1... [more]
A0A448ZDB1_9STRA2.750e-1837.766-pyruvoyltetrahydropterin synthase n=1 Tax=Pseudo... [more]
B7FTA7_PHATC4.510e-1837.236-pyruvoyltetrahydropterin synthase n=2 Tax=Phaeod... [more]
A0A1Z5K4V3_FISSO1.600e-1734.976-pyruvoyltetrahydropterin synthase n=1 Tax=Fistul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig77230contigM-pyrifera_M_contig77230:495..917 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.3
Seed ortholog evalue4.8e-14
Seed eggNOG ortholog2850.Phatr50741
KEGG rclassRC01117
KEGG koko:K22101
KEGG ReactionR04286,R11719
KEGG Pathwayko00790,map00790
KEGG ModuleM00841
Hectar predicted targeting categoryother localisation
EggNOG free text desc.6-pyruvoyl tetrahydropterin synthase
EggNOG OGs2S1HP@2759,2XGW8@2836,COG0720@1
EC4.1.2.60,4.2.3.12
COG Functional cat.H
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size423
Cds size423
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816673.5449684-CDS-M-pyrifera_M_contig77230:494..9171622816673.5449684-CDS-M-pyrifera_M_contig77230:494..917Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77230 495..917 -
1692278111.6833274-CDS-M-pyrifera_M_contig77230:494..9171692278111.6833274-CDS-M-pyrifera_M_contig77230:494..917Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77230 495..917 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig77230.18200.1prot_M-pyrifera_M_contig77230.18200.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig77230 495..917 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig77230.18200.1

>prot_M-pyrifera_M_contig77230.18200.1 ID=prot_M-pyrifera_M_contig77230.18200.1|Name=mRNA_M-pyrifera_M_contig77230.18200.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=141bp
VRLEGRELGEDGYLLDFGVVKAHMRALCKRLDERFLCPYRSPHMEVLLDG
KEVGGEGGVIFPGEGSTLQLHCKCDGARLQMPGSDAVLLPIRHSSAEELS
RFLANSLLSALSTPLTAAGIHHLTVGVIETERQEALYRVEV
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mRNA from alignment at M-pyrifera_M_contig77230:495..917-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig77230.18200.1 ID=mRNA_M-pyrifera_M_contig77230.18200.1|Name=mRNA_M-pyrifera_M_contig77230.18200.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=423bp|location=Sequence derived from alignment at M-pyrifera_M_contig77230:495..917- (Macrocystis pyrifera P11B4 male)
GTGCGCTTGGAGGGCAGGGAGCTTGGAGAAGACGGGTATTTGCTGGATTT TGGAGTAGTGAAAGCACATATGCGTGCATTGTGCAAGCGTTTGGATGAAC GCTTTTTGTGTCCGTACCGTAGTCCACATATGGAGGTGTTGTTGGATGGG AAGGAGGTGGGAGGGGAAGGAGGTGTCATTTTCCCGGGAGAAGGGAGTAC GTTGCAGCTGCATTGCAAGTGTGATGGTGCGAGGTTGCAAATGCCTGGCT CCGATGCAGTCCTCCTCCCCATTCGCCACTCTTCTGCGGAAGAGCTCTCT CGATTCCTTGCAAACTCCCTCCTCTCTGCCCTAAGCACCCCTCTCACGGC AGCCGGCATCCACCACCTCACTGTGGGCGTCATCGAAACCGAGAGGCAGG AAGCGTTGTACAGAGTGGAGGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig77230:495..917-

>mRNA_M-pyrifera_M_contig77230.18200.1 ID=mRNA_M-pyrifera_M_contig77230.18200.1|Name=mRNA_M-pyrifera_M_contig77230.18200.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=846bp|location=Sequence derived from alignment at M-pyrifera_M_contig77230:495..917- (Macrocystis pyrifera P11B4 male)
GTGCGCTTGGAGGGCAGGGAGCTTGGAGAAGACGGGTATTTGCTGGATTT
TGGAGTAGTGAAAGCACATATGCGTGCATTGTGCAAGCGTTTGGATGAAC
GCTTTTTGTGTCCGTACCGTAGTCCACATATGGAGGTGTTGTTGGATGGG
AAGGAGGTGGGAGGGGAAGGAGGTGTCATTTTCCCGGGAGAAGGGAGTAC
GTTGCAGCTGCATTGCAAGTGTGATGGTGCGAGGTTGCAAATGCCTGGCT
CCGATGCAGTCCTCCTCCCCATTCGCCACTCTTCTGCGGAAGAGCTCTCT
CGATTCCTTGCAAACTCCCTCCTCTCTGCCCTAAGCACCCCTCTCACGGC
AGCCGGCATCCACCACCTCACTGTGGGCGTCATCGAAACCGAGAGGCAGG
AAGCGTTGTACAGAGTGGAGGTGGTGCGCTTGGAGGGCAGGGAGCTTGGA
GAAGACGGGTATTTGCTGGATTTTGGAGTAGTGAAAGCACATATGCGTGC
ATTGTGCAAGCGTTTGGATGAACGCTTTTTGTGTCCGTACCGTAGTCCAC
ATATGGAGGTGTTGTTGGATGGGAAGGAGGTGGGAGGGGAAGGAGGTGTC
ATTTTCCCGGGAGAAGGGAGTACGTTGCAGCTGCATTGCAAGTGTGATGG
TGCGAGGTTGCAAATGCCTGGCTCCGATGCAGTCCTCCTCCCCATTCGCC
ACTCTTCTGCGGAAGAGCTCTCTCGATTCCTTGCAAACTCCCTCCTCTCT
GCCCTAAGCACCCCTCTCACGGCAGCCGGCATCCACCACCTCACTGTGGG
CGTCATCGAAACCGAGAGGCAGGAAGCGTTGTACAGAGTGGAGGTG
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