mRNA_M-pyrifera_M_contig77229.18199.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig77229.18199.1
Unique NamemRNA_M-pyrifera_M_contig77229.18199.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig77229.18199.1 vs. uniprot
Match: A0A0D2L1L6_9CHLO (Carbonyl reductase [NADPH] 1 n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2L1L6_9CHLO)

HSP 1 Score: 120 bits (301), Expect = 2.430e-31
Identity = 57/101 (56.44%), Postives = 72/101 (71.29%), Query Frame = 1
Query:    1 FVEAIRGGDHEGTGWSSSMYGVSKLLEIAYTLVLARQLKPEGILVHAVCPGWCKTDMSSHSGPRSAEKGAETPAWLATAPLQ--EWGERSTGGFFHDKHAI 297
            FV  I+ G ++  GW +SMYG+SK LE AYT VLA+QL+  GI+V+AVCPGWC TDMSS  GPR+A +GA+TP WLAT P    + GE  TG F+ D+  I
Sbjct:  181 FVADIKAGSYKAEGWPASMYGISKALETAYTRVLAKQLEGRGIMVNAVCPGWCATDMSSWGGPRTAAQGADTPVWLATLPPPGVDGGELVTGAFWRDRQRI 281          
BLAST of mRNA_M-pyrifera_M_contig77229.18199.1 vs. uniprot
Match: A0A835XQH8_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XQH8_9CHLO)

HSP 1 Score: 116 bits (291), Expect = 6.590e-30
Identity = 55/101 (54.46%), Postives = 71/101 (70.30%), Query Frame = 1
Query:    1 FVEAIRGGDHEGTGWSSSMYGVSKLLEIAYTLVLARQLKPEGILVHAVCPGWCKTDMSSHSGPRSAEKGAETPAWLATAPLQEWGERSTGGFFHDKHAISW 303
            FV +IR G+H   GW  +MYGVSKL+   YTL LA QLK +G++V+A+CPGWC+TDMSS  G +SA +GA+T  WLA  P     E STGGF+ ++ AI W
Sbjct:  180 FVSSIRAGNHMAKGWPDTMYGVSKLMLSLYTLQLAGQLKDKGVVVNAMCPGWCRTDMSSKRGTKSAAEGADTAVWLALRPP---AEASTGGFWGERSAIGW 277          
BLAST of mRNA_M-pyrifera_M_contig77229.18199.1 vs. uniprot
Match: A0A150GL76_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GL76_GONPE)

HSP 1 Score: 112 bits (279), Expect = 1.400e-29
Identity = 56/98 (57.14%), Postives = 68/98 (69.39%), Query Frame = 1
Query:    1 FVEAIRGGDHEGTGWSSSMYGVSKLLEIAYTLVLARQLKPEGILVHAVCPGWCKTDMSSHSGPRSAEKGAETPAWLAT------APLQEWGERSTGGF 276
            FV AIR G H   GW SSMYGVSKLL   +T  LA +L+ EG++V+A+CPGWC+TDMSS SG +SA +GA+T  WLA       A  Q WGERST G+
Sbjct:   45 FVSAIRAGKHAAQGWPSSMYGVSKLLVSLWTAQLAERLRGEGVMVNAMCPGWCRTDMSSQSGNKSAAEGADTAVWLALRSPKDLATGQFWGERSTIGW 142          
BLAST of mRNA_M-pyrifera_M_contig77229.18199.1 vs. uniprot
Match: A0A8J4AWK8_9CHLO (Uncharacterized protein n=2 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4AWK8_9CHLO)

HSP 1 Score: 116 bits (290), Expect = 2.150e-29
Identity = 54/101 (53.47%), Postives = 72/101 (71.29%), Query Frame = 1
Query:    1 FVEAIRGGDHEGTGWSSSMYGVSKLLEIAYTLVLARQLKPEGILVHAVCPGWCKTDMSSHSGPRSAEKGAETPAWLATAPLQEWGERSTGGFFHDKHAISW 303
            FV+AIR G H   GW +SMYG SKLL   +T  LA QL+ + ++V+A+CPGWC+TDMSS SG +SA +GA+T  WLA   L+  GE  TGGF+ +++ ISW
Sbjct:  222 FVDAIRSGSHSAAGWPNSMYGTSKLLLSLWTAQLAEQLRDKNVMVNAMCPGWCRTDMSSQSGTKSAAEGADTAVWLA---LRSPGELITGGFWGERNTISW 319          
BLAST of mRNA_M-pyrifera_M_contig77229.18199.1 vs. uniprot
Match: A0A8J4BU48_9CHLO (Uncharacterized protein n=2 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4BU48_9CHLO)

HSP 1 Score: 110 bits (274), Expect = 4.900e-27
Identity = 53/95 (55.79%), Postives = 66/95 (69.47%), Query Frame = 1
Query:    1 FVEAIRGGDHEGTGWSSSMYGVSKLLEIAYTLVLARQLKPEGILVHAVCPGWCKTDMSSHSGPRSAEKGAETPAWLATAPLQE------WGERST 267
            FV+AIR G+H   GW +SMYG SKLL   +T+ LA QL+ + I+V+A+CPGWC+TDMSS SG RSA  GA+T  WLA    +E      WGERST
Sbjct:  222 FVDAIRAGNHSALGWPNSMYGTSKLLLSLWTVQLAEQLRSQNIMVNAMCPGWCRTDMSSQSGTRSAADGADTAVWLALRSPRELITGEFWGERST 316          
BLAST of mRNA_M-pyrifera_M_contig77229.18199.1 vs. uniprot
Match: A0A2J8A2S9_9CHLO (Carbonyl reductase [NADPH] 1 n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J8A2S9_9CHLO)

HSP 1 Score: 108 bits (271), Expect = 6.190e-27
Identity = 52/101 (51.49%), Postives = 69/101 (68.32%), Query Frame = 1
Query:    1 FVEAIRGGDHEGTGWSSSMYGVSKLLEIAYTLVLARQLKPEGILVHAVCPGWCKTDMSSHSGPRSAEKGAETPAWLATAPLQEWGERSTGGFFHDKHAISW 303
            FV AIR GDH   GW SSMYG+SKLL   +T  LA QL+ + ++V+A+CPGWC+TDMSS  G +SA  GA+T  WLA   L+   + +TGGF+ ++  I W
Sbjct:  180 FVSAIRAGDHAAKGWPSSMYGISKLLLSLWTAQLAEQLRGKHVMVNAMCPGWCRTDMSSGGGTKSAADGADTAVWLA---LRNPDDFATGGFWGERGGIPW 277          
BLAST of mRNA_M-pyrifera_M_contig77229.18199.1 vs. uniprot
Match: D8UD62_VOLCA (Uncharacterized protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8UD62_VOLCA)

HSP 1 Score: 107 bits (267), Expect = 1.170e-26
Identity = 50/100 (50.00%), Postives = 70/100 (70.00%), Query Frame = 1
Query:    1 FVEAIRGGDHEGTGWSSSMYGVSKLLEIAYTLVLARQLKPEGILVHAVCPGWCKTDMSSHSGPRSAEKGAETPAWLATAPLQEWGERSTGGFFHDKHAIS 300
            FV+AIR G+H   GW +SMYG SKL+   +T  LA QL+ +G++V+A+CPGWC+TDMSS SG +SA  GA+T  WLA    Q++    TG F+ +++ IS
Sbjct:  129 FVDAIRAGNHAAAGWPNSMYGTSKLMLSLWTAQLADQLRDKGVMVNAMCPGWCRTDMSSQSGTKSAADGADTAVWLALRSPQDF---KTGAFWGERNIIS 225          
BLAST of mRNA_M-pyrifera_M_contig77229.18199.1 vs. uniprot
Match: A0A7S3Z9B8_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Z9B8_9EUKA)

HSP 1 Score: 101 bits (252), Expect = 2.680e-25
Identity = 48/99 (48.48%), Postives = 66/99 (66.67%), Query Frame = 1
Query:    1 FVEAIRGGDHEGTGWSSSMYGVSKLLEIAYTLVLARQLKPEGILVHAVCPGWCKTDMSSHSGPRSAEKGAETPAWLATAPLQEWGERSTGGFFHDKHAI 297
            F +  + G H   GW+++ YG SKL  IA T +LA +LKP+ I+ + +CPG+CKTDM+S +G RSA  GA+T  WLA   +Q   +R TG FFHD+ AI
Sbjct:   59 FCDDAKAGRHREEGWANTCYGTSKLAVIALTRILADKLKPKNIICNCMCPGYCKTDMTSQNGYRSAAAGADTAVWLA---MQNGEQRPTGKFFHDRRAI 154          
BLAST of mRNA_M-pyrifera_M_contig77229.18199.1 vs. uniprot
Match: A0A836BCN2_9CHLO (Uncharacterized protein n=5 Tax=Chlamydomonas TaxID=3052 RepID=A0A836BCN2_9CHLO)

HSP 1 Score: 102 bits (255), Expect = 1.480e-24
Identity = 50/101 (49.50%), Postives = 66/101 (65.35%), Query Frame = 1
Query:    1 FVEAIRGGDHEGTGWSSSMYGVSKLLEIAYTLVLARQLKPEGILVHAVCPGWCKTDMSSHSGPRSAEKGAETPAWLATAPLQEWGERSTGGFFHDKHAISW 303
            F+  IR G +   GW  SMYG SKLL   +T  LA QLK   ++V+A+CPGWC+TDMSS SG +SA +GA+T  WLA    Q++    TGGF+ ++  ISW
Sbjct:  181 FIAGIRDGTYGKQGWPGSMYGTSKLLVSLWTAQLAAQLKERHVMVNAMCPGWCRTDMSSQSGNKSAAEGADTAVWLALRSPQDF---VTGGFWGERSNISW 278          
BLAST of mRNA_M-pyrifera_M_contig77229.18199.1 vs. uniprot
Match: A0A250WYJ7_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250WYJ7_9CHLO)

HSP 1 Score: 102 bits (255), Expect = 2.550e-24
Identity = 47/99 (47.47%), Postives = 68/99 (68.69%), Query Frame = 1
Query:    1 FVEAIRGGDHEGTGWSSSMYGVSKLLEIAYTLVLARQLKPEGILVHAVCPGWCKTDMSSHSGPRSAEKGAETPAWLATAPLQEWGERSTGGFFHDKHAI 297
            F+E I+ G H   GW +SMYG+SKLL   Y+ + A++L+P  ++V+A CPGWCKTDMSS  GP++A +GA+TP WLA   L+   +  TG FF ++  +
Sbjct:  212 FIEDIQNGKHAQEGWPNSMYGISKLLLTVYSRIEAKELEPRQVMVNACCPGWCKTDMSSWGGPKTALEGADTPLWLA---LRTPSQFVTGKFFGERMEV 307          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig77229.18199.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2L1L6_9CHLO2.430e-3156.44Carbonyl reductase [NADPH] 1 n=1 Tax=Monoraphidium... [more]
A0A835XQH8_9CHLO6.590e-3054.46Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
A0A150GL76_GONPE1.400e-2957.14Uncharacterized protein n=1 Tax=Gonium pectorale T... [more]
A0A8J4AWK8_9CHLO2.150e-2953.47Uncharacterized protein n=2 Tax=Volvox africanus T... [more]
A0A8J4BU48_9CHLO4.900e-2755.79Uncharacterized protein n=2 Tax=Volvox reticulifer... [more]
A0A2J8A2S9_9CHLO6.190e-2751.49Carbonyl reductase [NADPH] 1 n=1 Tax=Tetrabaena so... [more]
D8UD62_VOLCA1.170e-2650.00Uncharacterized protein n=1 Tax=Volvox carteri f. ... [more]
A0A7S3Z9B8_9EUKA2.680e-2548.48Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A836BCN2_9CHLO1.480e-2449.50Uncharacterized protein n=5 Tax=Chlamydomonas TaxI... [more]
A0A250WYJ7_9CHLO2.550e-2447.47Uncharacterized protein n=1 Tax=Chlamydomonas eust... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig77229contigM-pyrifera_M_contig77229:706..1011 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score111.3
Seed ortholog evalue2.7e-22
Seed eggNOG ortholog227086.JGI_V11_52039
KEGG rclassRC00154,RC00205,RC00823,RC01491
KEGG koko:K00079
KEGG ReactionR02581,R02975,R04285,R09420
KEGG Pathwayko00590,ko00790,ko00980,ko01100,ko05204,map00590,map00790,map00980,map01100,map05204
Hectar predicted targeting categoryother localisation
EggNOG free text desc.oxidation-reduction process
EggNOG OGsCOG1028@1,KOG1208@2759
EC1.1.1.184,1.1.1.189,1.1.1.197
COG Functional cat.IQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size306
Cds size306
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816673.5129964-CDS-M-pyrifera_M_contig77229:705..10111622816673.5129964-CDS-M-pyrifera_M_contig77229:705..1011Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77229 706..1011 -
1692278111.6654441-CDS-M-pyrifera_M_contig77229:705..10111692278111.6654441-CDS-M-pyrifera_M_contig77229:705..1011Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77229 706..1011 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig77229.18199.1prot_M-pyrifera_M_contig77229.18199.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig77229 706..1011 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig77229.18199.1

>prot_M-pyrifera_M_contig77229.18199.1 ID=prot_M-pyrifera_M_contig77229.18199.1|Name=mRNA_M-pyrifera_M_contig77229.18199.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=102bp
FVEAIRGGDHEGTGWSSSMYGVSKLLEIAYTLVLARQLKPEGILVHAVCP
GWCKTDMSSHSGPRSAEKGAETPAWLATAPLQEWGERSTGGFFHDKHAIS
W*
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mRNA from alignment at M-pyrifera_M_contig77229:706..1011-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig77229.18199.1 ID=mRNA_M-pyrifera_M_contig77229.18199.1|Name=mRNA_M-pyrifera_M_contig77229.18199.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=306bp|location=Sequence derived from alignment at M-pyrifera_M_contig77229:706..1011- (Macrocystis pyrifera P11B4 male)
TTCGTGGAGGCCATTCGGGGTGGGGACCACGAAGGCACAGGGTGGAGCAG CAGCATGTACGGGGTCTCCAAGCTCCTCGAGATCGCCTACACGCTGGTGC TGGCCAGACAGCTCAAGCCAGAAGGCATCCTCGTCCACGCCGTATGCCCT GGGTGGTGCAAAACGGACATGTCCTCCCACTCAGGACCAAGGTCAGCCGA GAAAGGAGCAGAAACGCCAGCGTGGCTTGCCACAGCGCCGCTGCAAGAGT GGGGAGAGAGAAGCACCGGAGGATTCTTCCACGACAAACACGCCATCTCA TGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig77229:706..1011-

>mRNA_M-pyrifera_M_contig77229.18199.1 ID=mRNA_M-pyrifera_M_contig77229.18199.1|Name=mRNA_M-pyrifera_M_contig77229.18199.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=612bp|location=Sequence derived from alignment at M-pyrifera_M_contig77229:706..1011- (Macrocystis pyrifera P11B4 male)
TTCGTGGAGGCCATTCGGGGTGGGGACCACGAAGGCACAGGGTGGAGCAG
CAGCATGTACGGGGTCTCCAAGCTCCTCGAGATCGCCTACACGCTGGTGC
TGGCCAGACAGCTCAAGCCAGAAGGCATCCTCGTCCACGCCGTATGCCCT
GGGTGGTGCAAAACGGACATGTCCTCCCACTCAGGACCAAGGTCAGCCGA
GAAAGGAGCAGAAACGCCAGCGTGGCTTGCCACAGCGCCGCTGCAAGAGT
GGGGAGAGAGAAGCACCGGAGGATTCTTCCACGACAAACACGCCATCTCA
TGGTGATTCGTGGAGGCCATTCGGGGTGGGGACCACGAAGGCACAGGGTG
GAGCAGCAGCATGTACGGGGTCTCCAAGCTCCTCGAGATCGCCTACACGC
TGGTGCTGGCCAGACAGCTCAAGCCAGAAGGCATCCTCGTCCACGCCGTA
TGCCCTGGGTGGTGCAAAACGGACATGTCCTCCCACTCAGGACCAAGGTC
AGCCGAGAAAGGAGCAGAAACGCCAGCGTGGCTTGCCACAGCGCCGCTGC
AAGAGTGGGGAGAGAGAAGCACCGGAGGATTCTTCCACGACAAACACGCC
ATCTCATGGTGA
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