mRNA_M-pyrifera_M_contig77189.18192.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig77189.18192.1
Unique NamemRNA_M-pyrifera_M_contig77189.18192.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig77189.18192.1 vs. uniprot
Match: A0A5A8EKK4_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EKK4_CAFRO)

HSP 1 Score: 89.0 bits (219), Expect = 1.290e-16
Identity = 76/223 (34.08%), Postives = 117/223 (52.47%), Query Frame = 1
Query:   64 IEGSNFGNSLEGPSKALVGGQLCDPVVFVNSSFLECRNVSMAQ-WKETAVRVTVGGVEGQG-NVFSFTGSPTIVGIVPSSAPTTGNVWMNITGSNLGAGNGESDLSFITVGGVECLEIDSMNGGDKARCLIPPGVGAKLTIAVKTKDGLRA--AIDNLFSYNPPTISSISPNSVVTG-ALTYEVVITGTNLA-------ARNVTVGGVSCASITATSSKSITC 696
            + G+N   +L+ P + ++ G  C  VV VNSS + C  +S A  W  +AV +    V  +  ++ +  G P++V + P      G   + I G N G     S+++ +TVGG EC E+ S+      +   PPG G ++   V T  G RA  A    FSY+ PT++SISP++V++G +LTY+  I+GTNL        AR+V VGG  C+     SS  + C
Sbjct: 1427 VAGTNLATALDVP-ELVIAGVRCPDVVVVNSSVVVCFGLSGADGWLGSAVALAHPAVSVRSADLLTAFGLPSVVAVSPPGGSVEGGDVIRIVGENFG--RRLSEVASVTVGGREC-ELVSLVSSSIVQVRTPPGTG-RVQAVVLTNIGGRATDATPATFSYDAPTVASISPDTVLSGPSLTYDFNISGTNLGNALDGPNARDVLVGGRPCSQARVVSSTLLQC 1644          
BLAST of mRNA_M-pyrifera_M_contig77189.18192.1 vs. uniprot
Match: A0A5A8CR06_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CR06_CAFRO)

HSP 1 Score: 89.0 bits (219), Expect = 1.310e-16
Identity = 76/223 (34.08%), Postives = 117/223 (52.47%), Query Frame = 1
Query:   64 IEGSNFGNSLEGPSKALVGGQLCDPVVFVNSSFLECRNVSMAQ-WKETAVRVTVGGVEGQG-NVFSFTGSPTIVGIVPSSAPTTGNVWMNITGSNLGAGNGESDLSFITVGGVECLEIDSMNGGDKARCLIPPGVGAKLTIAVKTKDGLRA--AIDNLFSYNPPTISSISPNSVVTG-ALTYEVVITGTNLA-------ARNVTVGGVSCASITATSSKSITC 696
            + G+N   +L+ P + ++ G  C  VV VNSS + C  +S A  W  +AV +    V  +  ++ +  G P++V + P      G   + I G N G     S+++ +TVGG EC E+ S+      +   PPG G ++   V T  G RA  A    FSY+ PT++SISP++V++G +LTY+  I+GTNL        AR+V VGG  C+     SS  + C
Sbjct: 1371 VAGTNLATALDVP-ELVIAGVRCPDVVVVNSSVVVCFGLSGADGWLGSAVALAHPAVSVRSADLLTAFGLPSVVAVSPPGGSVEGGDVIRIVGENFG--RRLSEVASVTVGGREC-ELVSLVSSSIVQVRTPPGTG-RVQAVVLTNIGGRATDATPATFSYDAPTVASISPDTVLSGPSLTYDFNISGTNLGNALDGPNARDVLVGGRPCSQARVVSSTLLQC 1588          
BLAST of mRNA_M-pyrifera_M_contig77189.18192.1 vs. uniprot
Match: A0A514ZTP0_9BACT (T9SS type A sorting domain-containing protein n=1 Tax=Spirosoma sp. KCTC 42546 TaxID=2520506 RepID=A0A514ZTP0_9BACT)

HSP 1 Score: 72.4 bits (176), Expect = 5.870e-11
Identity = 69/228 (30.26%), Postives = 110/228 (48.25%), Query Frame = 1
Query:    1 TITKVTPNDVATLPGEYRKFYIEGSNFGNSLEGPSKALVGGQLCDPVVFVNSSFLECRNVSMAQWKETAVRVTVGGVEGQGNVFSFTGSPTIVGIVPSSAPTTGNVWMNITGSNLGAGNGESDLSFITVGGVECLEIDSMNGGDKARCLIPPGVGAKLTIAVKTKDGLRAAIDNLFSYNPPTISSISPNS-VVTGALTYEVVITGTNLAARNVTVGGVSCASITATSS 681
            TIT ++PN  +T  G      + G++FG S        +GG +  PV    S      N+   Q     V++TV G     +V     +P ++ + P++  T+GN  + + G++LGA         +TVGGV    +    G      L+P G G    + V   DG + +   LFSYNPPTI+ I+P S   TG +T  ++ T   + + +V++GG   AS++A SS
Sbjct:  291 TITSISPNHGSTSGGT--SLTVLGTSFGTS----GFVTIGG-ITAPVTGSYSHTAVVVNLPAGQGTNLPVQMTVSGQSSTSSVTFNYDAPALISVSPATG-TSGNT-VELIGTSLGASG------TVTVGGVSATVVSGGWGHTHVSFLLPSGQGTNQPVVVTRTDG-QVSNSLLFSYNPPTITVITPASGPTTGGITLTLMGTNFGVQSASVSIGG-QAASVSAQSS 501          
BLAST of mRNA_M-pyrifera_M_contig77189.18192.1 vs. uniprot
Match: UPI000644A0D9 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644A0D9)

HSP 1 Score: 61.6 bits (148), Expect = 2.720e-7
Identity = 56/176 (31.82%), Postives = 88/176 (50.00%), Query Frame = 1
Query:  196 KETAVRVTVGGVEGQGNVFSFTGSPTIVGIVPSSAPTTGNVWMNITGSNLGAGNGESDLSFITVGGVECLEIDSMNGGDKAR--CLIPPGVGAKLTIAVKTKDGLRAAIDNLFSYNPPTISSISPNSVVTGALTYEVVITGTNL-------AARNVTVGGVSCASITATSSKSITC 696
            K+ ++++ VG    + +  +++ +   V  VP SA T G V + I G+N      ++D S +T+ G  C   DS++  D     C I PG+G  L++++   D      DN FSYN PTISS+S +     ++T    +TGTN        A  N+T+    C +I   SS  ITC
Sbjct: 3703 KDISIKLVVGDQATERDNVTYSYNAPKVSSVPKSA-TDGEV-ITIVGTNFVPSGVDADDSSLTINGDSC---DSVSWIDDTHVSCSIAPGIGRDLSLSLVVGDQENTD-DNTFSYNAPTISSVSDSDTKGSSIT----LTGTNFVPAGVSPADSNITINNQDCETIDWISSTQITC 3868          
BLAST of mRNA_M-pyrifera_M_contig77189.18192.1 vs. uniprot
Match: A0A2P6N8E8_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6N8E8_9EUKA)

HSP 1 Score: 61.2 bits (147), Expect = 3.730e-7
Identity = 78/247 (31.58%), Postives = 116/247 (46.96%), Query Frame = 1
Query:    1 TITKVTPNDVATLPGEYRKFYIEGSNFGNSLEGPSKALVGGQLCDPVVFV---NSSFLECRNVSMAQWKETAVRVTVGGVEGQGNVFSFTGSPTIVG--IVPSSAPTTGNVWMNITGSNLGAGNGESDLSFITVGG------VECLEIDSMNGGDKARCLIPPGVGAKLTIAVKTKDGLRAAIDNLFSYNPPTISSISPNSVVTGALTYEVVITGTNLA----ARNVTVGGVSCASIT-ATSSKSIT 693
            T+T V+   V+TL G      I G+NFGN+L   S A VG     P+  +   NS  +    V         + +TVGG +     +++  +PTI    +VP+S   T     N+TG N G   G +    +T+ G      V+    +  +  D  +  +P G G+  TI V   DG + AI N FSY PPT+SS++     +G L   V + G NL     A ++ V G+S  +IT  TS  S+T
Sbjct: 5719 TVTNVSA-PVSTLGGN---IVIYGNNFGNNLSAVSVA-VGKSGISPITSLAIFNSDTVLTMTVPTGTGASVPITITVGG-QSVTTAYAYK-APTISSTYLVPTSGAMT-----NLTGLNFG---GNTSAITVTLSGPFFSQPVQLSVANVSSSHDVLQLTVPAGTGSNNTITVNV-DG-QIAIYNSFSYQPPTVSSLTGLPPTSGGL---VSVLGANLGSTLNAISIAVAGLSATNITYVTSDTSLT 5945          
BLAST of mRNA_M-pyrifera_M_contig77189.18192.1 vs. uniprot
Match: D3B798_POLPP (Uncharacterized protein n=2 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3B798_POLPP)

HSP 1 Score: 58.2 bits (139), Expect = 3.970e-6
Identity = 56/187 (29.95%), Postives = 90/187 (48.13%), Query Frame = 1
Query:  163 LECRNVSMAQWKETAVRVTVGGVEGQGN--VFSFTGSPTIVGIVPSSAPTTGNVWMNITGSNLGAGNGESDLSFITVGGVECLEIDSMNGGDKARCLIPPGVGAKLTIAVKTKDGLRAAIDNL-FSYNPPTISSISPNSVVTGALTYEVVITGTNLAA------RNVTVGGVSCASITATSSKSITC 696
            L+C      +  E  V VT+ G + Q     +++TG PTI  I P S    GN  ++I+G     G     ++F     ++   I S +  +     +P G G  + I V    G + +  N  FSYNPP+I+ I+PN       +  VVI+G+NL         ++ +G VSC++I   SS+S++C
Sbjct: 3539 LQCNVPVYDRNTEEIVSVTLDGEQSQETNVTYTYTGEPTIDSISPESGSVDGNYQLDISGKFFKNGEISPTVNF----NLQAATIVS-SSDNSITITVPSGGGKDIPITVSV--GSQTSNTNTDFSYNPPSITLITPNQGKYNQPS-SVVISGSNLGLPGQSLLTHILIGAVSCSNIQVQSSQSVSC 3717          
BLAST of mRNA_M-pyrifera_M_contig77189.18192.1 vs. uniprot
Match: A0A7I8VM73_9ANNE (DgyrCDS5681 n=1 Tax=Dimorphilus gyrociliatus TaxID=2664684 RepID=A0A7I8VM73_9ANNE)

HSP 1 Score: 55.1 bits (131), Expect = 4.270e-5
Identity = 63/224 (28.12%), Postives = 101/224 (45.09%), Query Frame = 1
Query:    4 ITKVTPNDVATLPGEYRKFYIEGSNFGNSLEGPSKALVGGQLCDPVVFVNSSFLECRNVSMAQWKET-AVRVTVGGVEGQGNVFSFTGSPTIVGIVPSSAPTTGNVWMNITGSNLGAGNGESDLSFITVGGVEC-LEIDSMNGGDKARCLIPPGVGAKLTIAVKTKDGLRAAIDNLFSYNP---PTISSISPNSVVTG-ALTYEVVITGTNLAARNVTVGGVSC 657
            IT + P    T  G      I GSNFG + +  S   VG   C P   +  + +EC   + A    + A+     G    GN  SF+G+PT+  + P++    G   + + G+   A     D+S I + G +C L+  +++   +  C+ PP +   +T+ +K   G     D  + Y     P +SSI+P +   G ALT       T+ A   VTVGG++C
Sbjct: 1861 ITAINP----TSGGASTTITITGSNFGTNKDDLSLK-VGEADCIPKDGLTDTQVECDLAASAVGANSLALEKVNAGSAIVGNSVSFSGTPTLDSVNPTTGSANGGTIITLIGNGFSA-----DIS-IRIAGQDCVLKSRTLS---RVTCVTPPFIA--MTVTIKITSGSTEFPDINYEYTDLATPIVSSINPTTGTGGDALTITGSDFNTDAATNAVTVGGLAC 2068          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig77189.18192.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A5A8EKK4_CAFRO1.290e-1634.08Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A5A8CR06_CAFRO1.310e-1634.08Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
A0A514ZTP0_9BACT5.870e-1130.26T9SS type A sorting domain-containing protein n=1 ... [more]
UPI000644A0D92.720e-731.82hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A2P6N8E8_9EUKA3.730e-731.58Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]
D3B798_POLPP3.970e-629.95Uncharacterized protein n=2 Tax=Polysphondylium pa... [more]
A0A7I8VM73_9ANNE4.270e-528.13DgyrCDS5681 n=1 Tax=Dimorphilus gyrociliatus TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig77189contigM-pyrifera_M_contig77189:179..916 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score67.8
Seed ortholog evalue7.7e-09
Seed eggNOG ortholog316057.RPD_3003
KEGG koko:K20276
KEGG Pathwayko02024,map02024
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ig-like, plexins, transcription factors
EggNOG OGs1QUZ3@1224,2U1BI@28211,3JVY2@41294,COG3468@1,COG3468@2
COG Functional cat.MU
Best tax levelBradyrhizobiaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons2
Model size696
Cds size696
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816672.88587-CDS-M-pyrifera_M_contig77189:178..8091622816672.88587-CDS-M-pyrifera_M_contig77189:178..809Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77189 179..809 +
1692278111.1808078-CDS-M-pyrifera_M_contig77189:178..8091692278111.1808078-CDS-M-pyrifera_M_contig77189:178..809Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77189 179..809 +
1622816672.8982704-CDS-M-pyrifera_M_contig77189:851..9161622816672.8982704-CDS-M-pyrifera_M_contig77189:851..916Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77189 852..916 +
1692278111.1941226-CDS-M-pyrifera_M_contig77189:851..9161692278111.1941226-CDS-M-pyrifera_M_contig77189:851..916Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77189 852..916 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig77189.18192.1prot_M-pyrifera_M_contig77189.18192.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig77189 179..916 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig77189.18192.1

>prot_M-pyrifera_M_contig77189.18192.1 ID=prot_M-pyrifera_M_contig77189.18192.1|Name=mRNA_M-pyrifera_M_contig77189.18192.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=232bp
TITKVTPNDVATLPGEYRKFYIEGSNFGNSLEGPSKALVGGQLCDPVVFV
NSSFLECRNVSMAQWKETAVRVTVGGVEGQGNVFSFTGSPTIVGIVPSSA
PTTGNVWMNITGSNLGAGNGESDLSFITVGGVECLEIDSMNGGDKARCLI
PPGVGAKLTIAVKTKDGLRAAIDNLFSYNPPTISSISPNSVVTGALTYEV
VITGTNLAARNVTVGGVSCASITATSSKSITC
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mRNA from alignment at M-pyrifera_M_contig77189:179..916+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig77189.18192.1 ID=mRNA_M-pyrifera_M_contig77189.18192.1|Name=mRNA_M-pyrifera_M_contig77189.18192.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=738bp|location=Sequence derived from alignment at M-pyrifera_M_contig77189:179..916+ (Macrocystis pyrifera P11B4 male)
ACCATCACCAAAGTCACACCGAACGACGTTGCCACACTCCCTGGAGAGTA TCGTAAATTTTACATTGAAGGAAGCAACTTTGGAAACAGCTTGGAAGGAC CTTCAAAGGCTTTGGTTGGGGGTCAACTTTGTGATCCTGTAGTTTTCGTC AACTCGTCGTTCTTGGAATGCCGAAATGTCTCCATGGCACAGTGGAAGGA GACTGCAGTGCGGGTCACAGTTGGTGGAGTAGAAGGGCAAGGGAATGTGT TTTCCTTCACGGGCTCTCCTACAATTGTTGGCATTGTTCCTTCATCTGCG CCCACTACCGGAAATGTGTGGATGAACATCACAGGAAGTAATCTTGGTGC AGGAAATGGAGAGTCTGATCTTTCCTTCATTACTGTAGGAGGTGTTGAAT GTCTCGAGATTGATTCCATGAATGGGGGAGATAAGGCAAGATGTCTTATT CCACCAGGTGTCGGGGCAAAGCTTACCATTGCAGTAAAGACCAAAGATGG ATTACGTGCTGCGATTGACAACCTCTTCTCCTACAATCCCCCCACCATCT CCTCCATCTCACCAAATTCTGTCGTCACAGGAGCATTGACGTATGAAGTT GTCATCACTGGGACAAACCTTGCAGCAAGAAGTGGGACTGGTGGTGTTGA CACAGGTGTTCCATCTCCTGAAGATGTCACGGTGGGAGGAGTATCTTGTG CATCAATCACCGCCACATCCTCCAAATCCATCACTTGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig77189:179..916+

>mRNA_M-pyrifera_M_contig77189.18192.1 ID=mRNA_M-pyrifera_M_contig77189.18192.1|Name=mRNA_M-pyrifera_M_contig77189.18192.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1392bp|location=Sequence derived from alignment at M-pyrifera_M_contig77189:179..916+ (Macrocystis pyrifera P11B4 male)
ACCATCACCAAAGTCACACCGAACGACGTTGCCACACTCCCTGGAGAGTA
TCGTAAATTTTACATTGAAGGAAGCAACTTTGGAAACAGCTTGGAAGGAC
CTTCAAAGGCTTTGGTTGGGGGTCAACTTTGTGATCCTGTAGTTTTCGTC
AACTCGTCGTTCTTGGAATGCCGAAATGTCTCCATGGCACAGTGGAAGGA
GACTGCAGTGCGGGTCACAGTTGGTGGAGTAGAAGGGCAAGGGAATGTGT
TTTCCTTCACGGGCTCTCCTACAATTGTTGGCATTGTTCCTTCATCTGCG
CCCACTACCGGAAATGTGTGGATGAACATCACAGGAAGTAATCTTGGTGC
AGGAAATGGAGAGTCTGATCTTTCCTTCATTACTGTAGGAGGTGTTGAAT
GTCTCGAGATTGATTCCATGAATGGGGGAGATAAGGCAAGATGTCTTATT
CCACCAGGTGTCGGGGCAAAGCTTACCATTGCAGTAAAGACCAAAGATGG
ATTACGTGCTGCGATTGACAACCTCTTCTCCTACAATCCCCCCACCATCT
CCTCCATCTCACCAAATTCTGTCGTCACAGGAGCATTGACGTATGAAGTT
GTCATCACTGGGACAAACCTTGCAGCAAGAAACCATCACCAAAGTCACAC
CGAACGACGTTGCCACACTCCCTGGAGAGTATCGTAAATTTTACATTGAA
GGAAGCAACTTTGGAAACAGCTTGGAAGGACCTTCAAAGGCTTTGGTTGG
GGGTCAACTTTGTGATCCTGTAGTTTTCGTCAACTCGTCGTTCTTGGAAT
GCCGAAATGTCTCCATGGCACAGTGGAAGGAGACTGCAGTGCGGGTCACA
GTTGGTGGAGTAGAAGGGCAAGGGAATGTGTTTTCCTTCACGGGCTCTCC
TACAATTGTTGGCATTGTTCCTTCATCTGCGCCCACTACCGGAAATGTGT
GGATGAACATCACAGGAAGTAATCTTGGTGCAGGAAATGGAGAGTCTGAT
CTTTCCTTCATTACTGTAGGAGGTGTTGAATGTCTCGAGATTGATTCCAT
GAATGGGGGAGATAAGGCAAGATGTCTTATTCCACCAGGTGTCGGGGCAA
AGCTTACCATTGCAGTAAAGACCAAAGATGGATTACGTGCTGCGATTGAC
AACCTCTTCTCCTACAATCCCCCCACCATCTCCTCCATCTCACCAAATTC
TGTCGTCACAGGAGCATTGACGTATGAAGTTGTCATCACTGGGACAAACC
TTGCAGCAAGAAATGTCACGGTGGGAGGAGTATCTTGTGCATCAATCACC
GCCACATCCTCCAAATCCATCACTTGTATGTCACGGTGGGAGGAGTATCT
TGTGCATCAATCACCGCCACATCCTCCAAATCCATCACTTGT
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