mRNA_M-pyrifera_M_contig77171.18187.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig77171.18187.1
Unique NamemRNA_M-pyrifera_M_contig77171.18187.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig77171.18187.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig77171contigM-pyrifera_M_contig77171:55..870 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score61.2
Seed ortholog evalue8.3e-07
Seed eggNOG ortholog1399774.JDWH01000011_gene575
Preferred nameyjdA
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0007059,GO:0008150,GO:0009987,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.Dynamin family
EggNOG OGs1N3I9@1224,1RSA8@1236,3X0M7@547,COG0699@1,COG0699@2
COG Functional cat.S
Best tax levelEnterobacter
Best eggNOG OGNA|NA|NA
Exons1
Model size816
Cds size804
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816672.6837852-CDS-M-pyrifera_M_contig77171:54..8581622816672.6837852-CDS-M-pyrifera_M_contig77171:54..858Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77171 55..858 -
1692278111.0807793-CDS-M-pyrifera_M_contig77171:54..8581692278111.0807793-CDS-M-pyrifera_M_contig77171:54..858Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77171 55..858 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816672.69514-UTR-M-pyrifera_M_contig77171:858..8701622816672.69514-UTR-M-pyrifera_M_contig77171:858..870Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig77171 859..870 -
1692278111.0918503-UTR-M-pyrifera_M_contig77171:858..8701692278111.0918503-UTR-M-pyrifera_M_contig77171:858..870Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig77171 859..870 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig77171.18187.1prot_M-pyrifera_M_contig77171.18187.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig77171 55..858 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig77171.18187.1

>prot_M-pyrifera_M_contig77171.18187.1 ID=prot_M-pyrifera_M_contig77171.18187.1|Name=mRNA_M-pyrifera_M_contig77171.18187.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=268bp
MSISERAAVVSGVAQHATVRRARGEQATSAALASLAKIVKKSTGELPITI
NFMGLCKAGKSQLQSAMMGRDLLPSATKPCTSIPTLYRHSADRERCRIFY
ANYDDNLRVQQSETPDFEGTAAECRLHLNGLNDRARALAAGLAEAAGQEE
AGDCQGDFVMREMQLAGVPMYTVVEVHLMGLVEAGVPEEVLAKCQFVDSP
GKGEAFNPVVDMTIRDITALSDLIVVLMDYRALGTSGDGALWQSLEEQRP
DLLRELGDRCLYFISHTD
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mRNA from alignment at M-pyrifera_M_contig77171:55..870-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig77171.18187.1 ID=mRNA_M-pyrifera_M_contig77171.18187.1|Name=mRNA_M-pyrifera_M_contig77171.18187.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=816bp|location=Sequence derived from alignment at M-pyrifera_M_contig77171:55..870- (Macrocystis pyrifera P11B4 male)
TCACTCCCTGGGATGTCGATCAGCGAGCGAGCGGCGGTGGTCTCGGGCGT
TGCCCAGCATGCAACGGTGCGGCGAGCTCGTGGCGAGCAGGCCACCTCGG
CCGCGCTGGCCTCGCTGGCGAAGATTGTGAAGAAGTCGACTGGCGAGCTG
CCGATCACGATCAACTTCATGGGCCTTTGCAAGGCCGGCAAGTCGCAGCT
CCAGTCGGCGATGATGGGCAGAGACCTGCTGCCGTCGGCGACGAAGCCGT
GCACCTCGATTCCAACCCTCTACCGCCACTCGGCAGACCGAGAGAGGTGC
CGCATCTTCTACGCCAACTACGACGACAACCTGCGGGTGCAGCAGAGTGA
GACGCCCGACTTCGAGGGCACTGCTGCAGAGTGTCGCCTCCACCTGAATG
GCCTCAACGACCGCGCGCGAGCGCTGGCCGCGGGCCTGGCAGAAGCTGCA
GGCCAGGAGGAGGCCGGCGACTGCCAAGGAGACTTTGTGATGAGGGAGAT
GCAGCTGGCGGGGGTGCCAATGTACACTGTGGTGGAGGTGCACCTCATGG
GCCTGGTGGAGGCCGGAGTGCCCGAGGAGGTGCTAGCCAAGTGTCAGTTC
GTGGACAGCCCCGGCAAGGGCGAGGCATTCAACCCCGTCGTGGATATGAC
GATCAGGGACATCACTGCGCTGTCGGACCTCATCGTGGTGCTCATGGACT
ACCGCGCCCTTGGCACTTCCGGCGACGGTGCCCTGTGGCAGTCCCTCGAG
GAGCAGCGCCCCGACCTCTTGCGTGAGCTGGGTGACCGCTGCCTGTACTT
CATCTCGCACACCGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig77171:55..870-

>mRNA_M-pyrifera_M_contig77171.18187.1 ID=mRNA_M-pyrifera_M_contig77171.18187.1|Name=mRNA_M-pyrifera_M_contig77171.18187.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1608bp|location=Sequence derived from alignment at M-pyrifera_M_contig77171:55..870- (Macrocystis pyrifera P11B4 male)
ATGTCGATCAGCGAGCGAGCGGCGGTGGTCTCGGGCGTTGCCCAGCATGC
AACGGTGCGGCGAGCTCGTGGCGAGCAGGCCACCTCGGCCGCGCTGGCCT
CGCTGGCGAAGATTGTGAAGAAGTCGACTGGCGAGCTGCCGATCACGATC
AACTTCATGGGCCTTTGCAAGGCCGGCAAGTCGCAGCTCCAGTCGGCGAT
GATGGGCAGAGACCTGCTGCCGTCGGCGACGAAGCCGTGCACCTCGATTC
CAACCCTCTACCGCCACTCGGCAGACCGAGAGAGGTGCCGCATCTTCTAC
GCCAACTACGACGACAACCTGCGGGTGCAGCAGAGTGAGACGCCCGACTT
CGAGGGCACTGCTGCAGAGTGTCGCCTCCACCTGAATGGCCTCAACGACC
GCGCGCGAGCGCTGGCCGCGGGCCTGGCAGAAGCTGCAGGCCAGGAGGAG
GCCGGCGACTGCCAAGGAGACTTTGTGATGAGGGAGATGCAGCTGGCGGG
GGTGCCAATGTACACTGTGGTGGAGGTGCACCTCATGGGCCTGGTGGAGG
CCGGAGTGCCCGAGGAGGTGCTAGCCAAGTGTCAGTTCGTGGACAGCCCC
GGCAAGGGCGAGGCATTCAACCCCGTCGTGGATATGACGATCAGGGACAT
CACTGCGCTGTCGGACCTCATCGTGGTGCTCATGGACTACCGCGCCCTTG
GCACTTCCGGCGACGGTGCCCTGTGGCAGTCCCTCGAGGAGCAGCGCCCC
GACCTCTTGCGTGAGCTGGGTGACCGCTGCCTGTACTTCATCTCGCACAC
CGACATGTCGATCAGCGAGCGAGCGGCGGTGGTCTCGGGCGTTGCCCAGC
ATGCAACGGTGCGGCGAGCTCGTGGCGAGCAGGCCACCTCGGCCGCGCTG
GCCTCGCTGGCGAAGATTGTGAAGAAGTCGACTGGCGAGCTGCCGATCAC
GATCAACTTCATGGGCCTTTGCAAGGCCGGCAAGTCGCAGCTCCAGTCGG
CGATGATGGGCAGAGACCTGCTGCCGTCGGCGACGAAGCCGTGCACCTCG
ATTCCAACCCTCTACCGCCACTCGGCAGACCGAGAGAGGTGCCGCATCTT
CTACGCCAACTACGACGACAACCTGCGGGTGCAGCAGAGTGAGACGCCCG
ACTTCGAGGGCACTGCTGCAGAGTGTCGCCTCCACCTGAATGGCCTCAAC
GACCGCGCGCGAGCGCTGGCCGCGGGCCTGGCAGAAGCTGCAGGCCAGGA
GGAGGCCGGCGACTGCCAAGGAGACTTTGTGATGAGGGAGATGCAGCTGG
CGGGGGTGCCAATGTACACTGTGGTGGAGGTGCACCTCATGGGCCTGGTG
GAGGCCGGAGTGCCCGAGGAGGTGCTAGCCAAGTGTCAGTTCGTGGACAG
CCCCGGCAAGGGCGAGGCATTCAACCCCGTCGTGGATATGACGATCAGGG
ACATCACTGCGCTGTCGGACCTCATCGTGGTGCTCATGGACTACCGCGCC
CTTGGCACTTCCGGCGACGGTGCCCTGTGGCAGTCCCTCGAGGAGCAGCG
CCCCGACCTCTTGCGTGAGCTGGGTGACCGCTGCCTGTACTTCATCTCGC
ACACCGAC
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