mRNA_M-pyrifera_M_contig77130.18181.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig77130.18181.1
Unique NamemRNA_M-pyrifera_M_contig77130.18181.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig77130.18181.1 vs. uniprot
Match: A0A812ZKZ5_SYMMI (Aminoacyl-tRNA hydrolase n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A812ZKZ5_SYMMI)

HSP 1 Score: 68.2 bits (165), Expect = 7.540e-13
Identity = 33/59 (55.93%), Postives = 43/59 (72.88%), Query Frame = 1 
Query:    4 VLLVRTNLGMSKGKVAAQCAHAAVAAVRAASHTHRTELKGWKRSGEPKVVCKVRTEEEM 180
            VLLVRT+LGM KGK+AAQC HA + A +AA H     L+ W+RSG+ K+  KV +EEE+
Sbjct:   52 VLLVRTDLGMQKGKIAAQCGHAVLGAYKAAIHQENIYLESWERSGQMKIALKVSSEEEL 110
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BLAST of mRNA_M-pyrifera_M_contig77130.18181.1 vs. uniprot
Match: A0A0B7B516_9EUPU (Aminoacyl-tRNA hydrolase n=2 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B7B516_9EUPU)

HSP 1 Score: 66.6 bits (161), Expect = 3.350e-12
Identity = 35/59 (59.32%), Postives = 43/59 (72.88%), Query Frame = 1 
Query:    4 VLLVRTNLGMSKGKVAAQCAHAAVAAVRAASHTHRTELKGWKRSGEPKVVCKVRTEEEM 180
            VL+VR +L M KGKVAAQCAHAAV AV  +S+ + T LK W+R  +PKVV KV  EE +
Sbjct:   71 VLVVRMDLKMGKGKVAAQCAHAAVGAVEKSSYENMTALKRWQRHAQPKVVLKVNDEESL 129
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BLAST of mRNA_M-pyrifera_M_contig77130.18181.1 vs. uniprot
Match: A0A1Q9EUF4_SYMMI (Aminoacyl-tRNA hydrolase n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9EUF4_SYMMI)

HSP 1 Score: 68.2 bits (165), Expect = 5.020e-12
Identity = 33/59 (55.93%), Postives = 43/59 (72.88%), Query Frame = 1 
Query:    4 VLLVRTNLGMSKGKVAAQCAHAAVAAVRAASHTHRTELKGWKRSGEPKVVCKVRTEEEM 180
            VLLVRT+LGM KGK+AAQC HA + A +AA H     L+ W+RSG+ K+  KV +EEE+
Sbjct:   52 VLLVRTDLGMQKGKIAAQCGHAVLGAYKAAIHQENIYLESWERSGQMKIALKVSSEEEL 110
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BLAST of mRNA_M-pyrifera_M_contig77130.18181.1 vs. uniprot
Match: A0A164QYB9_9CRUS (Aminoacyl-tRNA hydrolase n=2 Tax=Daphnia magna TaxID=35525 RepID=A0A164QYB9_9CRUS)

HSP 1 Score: 65.9 bits (159), Expect = 5.070e-12
Identity = 34/59 (57.63%), Postives = 41/59 (69.49%), Query Frame = 1 
Query:    4 VLLVRTNLGMSKGKVAAQCAHAAVAAVRAASHTHRTELKGWKRSGEPKVVCKVRTEEEM 180
            V++VR NLGM KGK+A+QCAHAAV   + A       LK W  SG+PKVV KV TEEE+
Sbjct:   45 VIVVRNNLGMGKGKIASQCAHAAVQCYKTALRMDNRTLKIWLASGQPKVVVKVDTEEEL 103
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BLAST of mRNA_M-pyrifera_M_contig77130.18181.1 vs. uniprot
Match: E9H0W2_DAPPU (Aminoacyl-tRNA hydrolase n=1 Tax=Daphnia pulex TaxID=6669 RepID=E9H0W2_DAPPU)

HSP 1 Score: 63.9 bits (154), Expect = 2.830e-11
Identity = 33/59 (55.93%), Postives = 41/59 (69.49%), Query Frame = 1 
Query:    4 VLLVRTNLGMSKGKVAAQCAHAAVAAVRAASHTHRTELKGWKRSGEPKVVCKVRTEEEM 180
            V++VR NLGM KGK+A+QCAHAAV   +    T    +K W  SG+PKVV KV TEEE+
Sbjct:   45 VVVVRNNLGMGKGKIASQCAHAAVECYKTGLKTDHKIVKIWLASGQPKVVVKVDTEEEL 103
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BLAST of mRNA_M-pyrifera_M_contig77130.18181.1 vs. uniprot
Match: A0A1Y1WLV1_9FUNG (Aminoacyl-tRNA hydrolase n=1 Tax=Linderina pennispora TaxID=61395 RepID=A0A1Y1WLV1_9FUNG)

HSP 1 Score: 63.5 bits (153), Expect = 2.890e-11
Identity = 33/59 (55.93%), Postives = 42/59 (71.19%), Query Frame = 1 
Query:    4 VLLVRTNLGMSKGKVAAQCAHAAVAAVRAASHTHRTELKGWKRSGEPKVVCKVRTEEEM 180
            VL+VRT+LGM+KGKVAAQCAHAA+   + A       LK W+ +G+ KV  KV +EEEM
Sbjct:   29 VLIVRTDLGMTKGKVAAQCAHAALGCYKRALKQSPAVLKAWEYTGQAKVTLKVNSEEEM 87
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BLAST of mRNA_M-pyrifera_M_contig77130.18181.1 vs. uniprot
Match: UPI001EE10380 (peptidyl-tRNA hydrolase 2, mitochondrial-like n=2 Tax=Daphnia TaxID=6668 RepID=UPI001EE10380)

HSP 1 Score: 63.9 bits (154), Expect = 5.750e-11
Identity = 33/59 (55.93%), Postives = 41/59 (69.49%), Query Frame = 1 
Query:    4 VLLVRTNLGMSKGKVAAQCAHAAVAAVRAASHTHRTELKGWKRSGEPKVVCKVRTEEEM 180
            V++VR NLGM KGK+A+QCAHAAV   +    T    +K W  SG+PKVV KV TEEE+
Sbjct:   86 VVVVRNNLGMGKGKIASQCAHAAVECYKTGLKTDHKIVKIWLASGQPKVVVKVDTEEEL 144
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BLAST of mRNA_M-pyrifera_M_contig77130.18181.1 vs. uniprot
Match: A0A1X2IE42_9FUNG (Aminoacyl-tRNA hydrolase n=1 Tax=Absidia repens TaxID=90262 RepID=A0A1X2IE42_9FUNG)

HSP 1 Score: 62.0 bits (149), Expect = 6.380e-11
Identity = 30/59 (50.85%), Postives = 43/59 (72.88%), Query Frame = 1 
Query:    4 VLLVRTNLGMSKGKVAAQCAHAAVAAVRAASHTHRTELKGWKRSGEPKVVCKVRTEEEM 180
            VL+VRT+LGM+KGK+AAQC HA +A  +A   T+   L+ W+RSG+ KV  K  +EE++
Sbjct:    2 VLVVRTDLGMTKGKIAAQCGHATLACYKAVQKTNPKALQKWERSGQAKVALKAVSEEQL 60
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BLAST of mRNA_M-pyrifera_M_contig77130.18181.1 vs. uniprot
Match: UPI00083BE1CA (peptidyl-tRNA hydrolase 2, mitochondrial-like isoform X1 n=1 Tax=Eufriesea mexicana TaxID=516756 RepID=UPI00083BE1CA)

HSP 1 Score: 62.0 bits (149), Expect = 8.000e-11
Identity = 32/59 (54.24%), Postives = 43/59 (72.88%), Query Frame = 1 
Query:    4 VLLVRTNLGMSKGKVAAQCAHAAVAAVRAASHTHRTELKGWKRSGEPKVVCKVRTEEEM 180
            VL++RT+L M KGKVAAQCAHAAVAA +AA       L GW+ +G+PK+  KV +E+ +
Sbjct:   31 VLVIRTDLKMGKGKVAAQCAHAAVAAYKAAIKRCPIPLTGWEYNGQPKITLKVDSEDAL 89
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BLAST of mRNA_M-pyrifera_M_contig77130.18181.1 vs. uniprot
Match: UPI00083BCDC4 (peptidyl-tRNA hydrolase 2, mitochondrial-like isoform X2 n=1 Tax=Eufriesea mexicana TaxID=516756 RepID=UPI00083BCDC4)

HSP 1 Score: 62.0 bits (149), Expect = 8.000e-11
Identity = 32/59 (54.24%), Postives = 43/59 (72.88%), Query Frame = 1 
Query:    4 VLLVRTNLGMSKGKVAAQCAHAAVAAVRAASHTHRTELKGWKRSGEPKVVCKVRTEEEM 180
            VL++RT+L M KGKVAAQCAHAAVAA +AA       L GW+ +G+PK+  KV +E+ +
Sbjct:   12 VLVIRTDLKMGKGKVAAQCAHAAVAAYKAAIKRCPIPLTGWEYNGQPKITLKVDSEDAL 70
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig77130.18181.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A812ZKZ5_SYMMI7.540e-1355.93Aminoacyl-tRNA hydrolase n=3 Tax=Symbiodinium TaxI... [more]
A0A0B7B516_9EUPU3.350e-1259.32Aminoacyl-tRNA hydrolase n=2 Tax=Arion vulgaris Ta... [more]
A0A1Q9EUF4_SYMMI5.020e-1255.93Aminoacyl-tRNA hydrolase n=1 Tax=Symbiodinium micr... [more]
A0A164QYB9_9CRUS5.070e-1257.63Aminoacyl-tRNA hydrolase n=2 Tax=Daphnia magna Tax... [more]
E9H0W2_DAPPU2.830e-1155.93Aminoacyl-tRNA hydrolase n=1 Tax=Daphnia pulex Tax... [more]
A0A1Y1WLV1_9FUNG2.890e-1155.93Aminoacyl-tRNA hydrolase n=1 Tax=Linderina pennisp... [more]
UPI001EE103805.750e-1155.93peptidyl-tRNA hydrolase 2, mitochondrial-like n=2 ... [more]
A0A1X2IE42_9FUNG6.380e-1150.85Aminoacyl-tRNA hydrolase n=1 Tax=Absidia repens Ta... [more]
UPI00083BE1CA8.000e-1154.24peptidyl-tRNA hydrolase 2, mitochondrial-like isof... [more]
UPI00083BCDC48.000e-1154.24peptidyl-tRNA hydrolase 2, mitochondrial-like isof... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig77130contigM-pyrifera_M_contig77130:41..223 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size183
Cds size153
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816672.3576694-UTR-M-pyrifera_M_contig77130:40..701622816672.3576694-UTR-M-pyrifera_M_contig77130:40..70Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig77130 41..70 +
1692278110.9239595-UTR-M-pyrifera_M_contig77130:40..701692278110.9239595-UTR-M-pyrifera_M_contig77130:40..70Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig77130 41..70 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816672.369625-CDS-M-pyrifera_M_contig77130:70..2231622816672.369625-CDS-M-pyrifera_M_contig77130:70..223Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77130 71..223 +
1692278110.9334602-CDS-M-pyrifera_M_contig77130:70..2231692278110.9334602-CDS-M-pyrifera_M_contig77130:70..223Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77130 71..223 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig77130.18181.1prot_M-pyrifera_M_contig77130.18181.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig77130 71..223 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig77130.18181.1

>prot_M-pyrifera_M_contig77130.18181.1 ID=prot_M-pyrifera_M_contig77130.18181.1|Name=mRNA_M-pyrifera_M_contig77130.18181.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=51bp
MSKGKVAAQCAHAAVAAVRAASHTHRTELKGWKRSGEPKVVCKVRTEEEM
*
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mRNA from alignment at M-pyrifera_M_contig77130:41..223+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig77130.18181.1 ID=mRNA_M-pyrifera_M_contig77130.18181.1|Name=mRNA_M-pyrifera_M_contig77130.18181.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=183bp|location=Sequence derived from alignment at M-pyrifera_M_contig77130:41..223+ (Macrocystis pyrifera P11B4 male)
CAGGTGCTCTTGGTTCGTACTAATTTAGGGATGAGCAAGGGAAAAGTGGC
TGCACAGTGTGCTCATGCTGCCGTAGCTGCTGTTCGTGCTGCTTCACACA
CCCATCGCACTGAGTTGAAGGGTTGGAAGCGTAGTGGGGAGCCGAAAGTA
GTATGCAAAGTGAGAACAGAGGAAGAGATGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig77130:41..223+

>mRNA_M-pyrifera_M_contig77130.18181.1 ID=mRNA_M-pyrifera_M_contig77130.18181.1|Name=mRNA_M-pyrifera_M_contig77130.18181.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=306bp|location=Sequence derived from alignment at M-pyrifera_M_contig77130:41..223+ (Macrocystis pyrifera P11B4 male)
ATGAGCAAGGGAAAAGTGGCTGCACAGTGTGCTCATGCTGCCGTAGCTGC
TGTTCGTGCTGCTTCACACACCCATCGCACTGAGTTGAAGGGTTGGAAGC
GTAGTGGGGAGCCGAAAGTAGTATGCAAAGTGAGAACAGAGGAAGAGATG
TAAATGAGCAAGGGAAAAGTGGCTGCACAGTGTGCTCATGCTGCCGTAGC
TGCTGTTCGTGCTGCTTCACACACCCATCGCACTGAGTTGAAGGGTTGGA
AGCGTAGTGGGGAGCCGAAAGTAGTATGCAAAGTGAGAACAGAGGAAGAG
ATGTAA
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