mRNA_M-pyrifera_M_contig77127.18179.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig77127.18179.1
Unique NamemRNA_M-pyrifera_M_contig77127.18179.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig77127.18179.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig77127contigM-pyrifera_M_contig77127:282..878 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size597
Cds size597
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816672.2778318-CDS-M-pyrifera_M_contig77127:281..8781622816672.2778318-CDS-M-pyrifera_M_contig77127:281..878Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77127 282..878 -
1692278110.8900049-CDS-M-pyrifera_M_contig77127:281..8781692278110.8900049-CDS-M-pyrifera_M_contig77127:281..878Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77127 282..878 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig77127.18179.1prot_M-pyrifera_M_contig77127.18179.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig77127 282..878 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig77127.18179.1

>prot_M-pyrifera_M_contig77127.18179.1 ID=prot_M-pyrifera_M_contig77127.18179.1|Name=mRNA_M-pyrifera_M_contig77127.18179.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=199bp
VRVNLSGALLCAGRAREARLVEDVDRSALHAEEVADAWDLLYQRACAAAD
EGSMVEAVKGLSSAAKLAAEEGEGVDAEAKLQRAALLHRLLWRTEASAEA
AMIARGMEDAALSAVARNNDTAARRDRKDVVDALRRTTEALTKDAENPKL
TPGQVLALRANKCVLLLALGKASEAESEAADLEKDCPLAATPALIRASV
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mRNA from alignment at M-pyrifera_M_contig77127:282..878-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig77127.18179.1 ID=mRNA_M-pyrifera_M_contig77127.18179.1|Name=mRNA_M-pyrifera_M_contig77127.18179.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=597bp|location=Sequence derived from alignment at M-pyrifera_M_contig77127:282..878- (Macrocystis pyrifera P11B4 male)
GTGCGTGTGAATCTTTCAGGTGCACTATTGTGTGCTGGAAGAGCAAGAGA
AGCAAGATTAGTGGAAGATGTTGATCGTTCTGCGTTGCATGCGGAGGAAG
TTGCAGATGCATGGGATTTATTGTACCAACGTGCTTGTGCAGCTGCTGAT
GAAGGATCAATGGTGGAAGCAGTGAAAGGCTTGTCATCTGCAGCAAAGTT
GGCAGCTGAAGAAGGAGAAGGTGTTGATGCTGAAGCCAAATTACAACGTG
CTGCTCTTTTGCATCGCTTGTTGTGGCGCACAGAAGCTAGTGCTGAAGCA
GCAATGATTGCTCGTGGGATGGAAGATGCTGCATTGAGTGCTGTTGCTCG
AAACAATGATACTGCAGCAAGGAGAGATCGTAAAGATGTTGTCGATGCAC
TTCGACGAACAACAGAAGCATTGACGAAAGATGCAGAGAATCCAAAACTC
ACTCCTGGACAAGTTCTTGCGCTCCGTGCAAACAAATGTGTCTTACTTCT
TGCTCTTGGGAAAGCAAGTGAAGCAGAGAGTGAAGCTGCTGACCTTGAAA
AAGATTGTCCTTTGGCTGCAACTCCAGCATTGATTCGGGCATCTGTA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig77127:282..878-

>mRNA_M-pyrifera_M_contig77127.18179.1 ID=mRNA_M-pyrifera_M_contig77127.18179.1|Name=mRNA_M-pyrifera_M_contig77127.18179.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1194bp|location=Sequence derived from alignment at M-pyrifera_M_contig77127:282..878- (Macrocystis pyrifera P11B4 male)
GTGCGTGTGAATCTTTCAGGTGCACTATTGTGTGCTGGAAGAGCAAGAGA
AGCAAGATTAGTGGAAGATGTTGATCGTTCTGCGTTGCATGCGGAGGAAG
TTGCAGATGCATGGGATTTATTGTACCAACGTGCTTGTGCAGCTGCTGAT
GAAGGATCAATGGTGGAAGCAGTGAAAGGCTTGTCATCTGCAGCAAAGTT
GGCAGCTGAAGAAGGAGAAGGTGTTGATGCTGAAGCCAAATTACAACGTG
CTGCTCTTTTGCATCGCTTGTTGTGGCGCACAGAAGCTAGTGCTGAAGCA
GCAATGATTGCTCGTGGGATGGAAGATGCTGCATTGAGTGCTGTTGCTCG
AAACAATGATACTGCAGCAAGGAGAGATCGTAAAGATGTTGTCGATGCAC
TTCGACGAACAACAGAAGCATTGACGAAAGATGCAGAGAATCCAAAACTC
ACTCCTGGACAAGTTCTTGCGCTCCGTGCAAACAAATGTGTCTTACTTCT
TGCTCTTGGGAAAGCAAGTGAAGCAGAGAGTGAAGCTGCTGACCTTGAAA
AAGATTGTCCTTTGGCTGCAACTCCAGCATTGATTCGGGCATCTGTAGTG
CGTGTGAATCTTTCAGGTGCACTATTGTGTGCTGGAAGAGCAAGAGAAGC
AAGATTAGTGGAAGATGTTGATCGTTCTGCGTTGCATGCGGAGGAAGTTG
CAGATGCATGGGATTTATTGTACCAACGTGCTTGTGCAGCTGCTGATGAA
GGATCAATGGTGGAAGCAGTGAAAGGCTTGTCATCTGCAGCAAAGTTGGC
AGCTGAAGAAGGAGAAGGTGTTGATGCTGAAGCCAAATTACAACGTGCTG
CTCTTTTGCATCGCTTGTTGTGGCGCACAGAAGCTAGTGCTGAAGCAGCA
ATGATTGCTCGTGGGATGGAAGATGCTGCATTGAGTGCTGTTGCTCGAAA
CAATGATACTGCAGCAAGGAGAGATCGTAAAGATGTTGTCGATGCACTTC
GACGAACAACAGAAGCATTGACGAAAGATGCAGAGAATCCAAAACTCACT
CCTGGACAAGTTCTTGCGCTCCGTGCAAACAAATGTGTCTTACTTCTTGC
TCTTGGGAAAGCAAGTGAAGCAGAGAGTGAAGCTGCTGACCTTGAAAAAG
ATTGTCCTTTGGCTGCAACTCCAGCATTGATTCGGGCATCTGTA
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