mRNA_M-pyrifera_M_contig77126.18178.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig77126.18178.1
Unique NamemRNA_M-pyrifera_M_contig77126.18178.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig77126.18178.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig77126contigM-pyrifera_M_contig77126:676..1014 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size339
Cds size327
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816672.2225144-CDS-M-pyrifera_M_contig77126:675..10021622816672.2225144-CDS-M-pyrifera_M_contig77126:675..1002Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77126 676..1002 -
1692278110.8617232-CDS-M-pyrifera_M_contig77126:675..10021692278110.8617232-CDS-M-pyrifera_M_contig77126:675..1002Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77126 676..1002 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816672.236576-UTR-M-pyrifera_M_contig77126:1002..10141622816672.236576-UTR-M-pyrifera_M_contig77126:1002..1014Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig77126 1003..1014 -
1692278110.8760169-UTR-M-pyrifera_M_contig77126:1002..10141692278110.8760169-UTR-M-pyrifera_M_contig77126:1002..1014Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig77126 1003..1014 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig77126.18178.1prot_M-pyrifera_M_contig77126.18178.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig77126 676..1002 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig77126.18178.1

>prot_M-pyrifera_M_contig77126.18178.1 ID=prot_M-pyrifera_M_contig77126.18178.1|Name=mRNA_M-pyrifera_M_contig77126.18178.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=109bp
MAFVSRFEADEKLVAAVFRRILAVALQHDAPEAGACLSIARRMLDKYSFL
SSLLQEPLPAIGVVLQPRWDGVVAGTALGTHTPLWELHTLASHAHPTVAA
MAQALLSFP
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mRNA from alignment at M-pyrifera_M_contig77126:676..1014-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig77126.18178.1 ID=mRNA_M-pyrifera_M_contig77126.18178.1|Name=mRNA_M-pyrifera_M_contig77126.18178.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=339bp|location=Sequence derived from alignment at M-pyrifera_M_contig77126:676..1014- (Macrocystis pyrifera P11B4 male)
GAGGCGGTGCAGATGGCCTTTGTGTCACGCTTCGAAGCCGACGAAAAGCT
GGTTGCCGCAGTGTTTCGTCGCATCCTTGCAGTTGCCTTGCAACATGATG
CACCGGAAGCTGGAGCTTGCTTGTCCATCGCACGGCGAATGCTTGACAAG
TACTCCTTCCTCTCCTCACTCCTCCAAGAACCATTGCCTGCCATTGGAGT
TGTCCTACAACCTCGGTGGGATGGAGTGGTGGCAGGAACAGCGTTGGGAA
CACACACACCCTTGTGGGAACTGCACACGCTCGCTTCCCATGCTCACCCC
ACTGTAGCTGCCATGGCACAAGCACTTCTCTCCTTCCCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig77126:676..1014-

>mRNA_M-pyrifera_M_contig77126.18178.1 ID=mRNA_M-pyrifera_M_contig77126.18178.1|Name=mRNA_M-pyrifera_M_contig77126.18178.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=654bp|location=Sequence derived from alignment at M-pyrifera_M_contig77126:676..1014- (Macrocystis pyrifera P11B4 male)
ATGGCCTTTGTGTCACGCTTCGAAGCCGACGAAAAGCTGGTTGCCGCAGT
GTTTCGTCGCATCCTTGCAGTTGCCTTGCAACATGATGCACCGGAAGCTG
GAGCTTGCTTGTCCATCGCACGGCGAATGCTTGACAAGTACTCCTTCCTC
TCCTCACTCCTCCAAGAACCATTGCCTGCCATTGGAGTTGTCCTACAACC
TCGGTGGGATGGAGTGGTGGCAGGAACAGCGTTGGGAACACACACACCCT
TGTGGGAACTGCACACGCTCGCTTCCCATGCTCACCCCACTGTAGCTGCC
ATGGCACAAGCACTTCTCTCCTTCCCAATGGCCTTTGTGTCACGCTTCGA
AGCCGACGAAAAGCTGGTTGCCGCAGTGTTTCGTCGCATCCTTGCAGTTG
CCTTGCAACATGATGCACCGGAAGCTGGAGCTTGCTTGTCCATCGCACGG
CGAATGCTTGACAAGTACTCCTTCCTCTCCTCACTCCTCCAAGAACCATT
GCCTGCCATTGGAGTTGTCCTACAACCTCGGTGGGATGGAGTGGTGGCAG
GAACAGCGTTGGGAACACACACACCCTTGTGGGAACTGCACACGCTCGCT
TCCCATGCTCACCCCACTGTAGCTGCCATGGCACAAGCACTTCTCTCCTT
CCCA
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