mRNA_M-pyrifera_M_contig77120.18176.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig77120.18176.1
Unique NamemRNA_M-pyrifera_M_contig77120.18176.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig77120.18176.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig77120contigM-pyrifera_M_contig77120:442..974 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size468
Cds size450
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig77120.18176.1prot_M-pyrifera_M_contig77120.18176.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig77120 442..956 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816672.114963-CDS-M-pyrifera_M_contig77120:441..7861622816672.114963-CDS-M-pyrifera_M_contig77120:441..786Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77120 442..786 -
1692278110.7796881-CDS-M-pyrifera_M_contig77120:441..7861692278110.7796881-CDS-M-pyrifera_M_contig77120:441..786Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77120 442..786 -
1622816672.1315491-CDS-M-pyrifera_M_contig77120:851..9561622816672.1315491-CDS-M-pyrifera_M_contig77120:851..956Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77120 852..956 -
1692278110.7934601-CDS-M-pyrifera_M_contig77120:851..9561692278110.7934601-CDS-M-pyrifera_M_contig77120:851..956Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77120 852..956 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816672.142071-UTR-M-pyrifera_M_contig77120:956..9741622816672.142071-UTR-M-pyrifera_M_contig77120:956..974Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig77120 957..974 -
1692278110.8031986-UTR-M-pyrifera_M_contig77120:956..9741692278110.8031986-UTR-M-pyrifera_M_contig77120:956..974Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig77120 957..974 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig77120.18176.1

>prot_M-pyrifera_M_contig77120.18176.1 ID=prot_M-pyrifera_M_contig77120.18176.1|Name=mRNA_M-pyrifera_M_contig77120.18176.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=150bp
MGRDSALGNLPHNWFPNSHTQQDLILCGQAALLTWGNIANLDHEESLIPN
ATLFEAAYARSKQLRPYLAGAYPLREAALLFAESLRDDLSPLTETIPAGP
DVGEWRQLLMPTVGVWSTLERTGVQAGVVMDWQLSAGALEGQGQQWLQDP
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mRNA from alignment at M-pyrifera_M_contig77120:442..974-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig77120.18176.1 ID=mRNA_M-pyrifera_M_contig77120.18176.1|Name=mRNA_M-pyrifera_M_contig77120.18176.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=533bp|location=Sequence derived from alignment at M-pyrifera_M_contig77120:442..974- (Macrocystis pyrifera P11B4 male)
GTCACTCTGGGATGGGCCATGGGGAGAGATTCCGCGCTCGGCAATCTGCC
CCACAACTGGTTTCCAAACTCCCACACACAACAAGATCTCATCCTCTGTG
GTCAAGCCGCACTCCTCACTTGGGTAATGGGGCAAGGATTGGGGAAGGAG
ATGGGGGATTGTGGTGTCAATTTTGAGTTTGTTTGCAGGGGAATATTGCG
AATTTGGATCATGAGGAGAGTTTGATTCCAAATGCGACATTGTTTGAGGC
AGCATATGCAAGATCCAAGCAACTTCGTCCGTATCTTGCGGGTGCTTATC
CACTTCGAGAGGCTGCGTTGCTGTTTGCAGAGAGTTTGCGAGACGATCTC
TCCCCACTGACTGAAACGATTCCAGCGGGTCCTGATGTGGGAGAGTGGAG
GCAACTACTCATGCCTACAGTTGGGGTGTGGTCAACTTTGGAACGGACTG
GTGTGCAAGCTGGAGTGGTTATGGATTGGCAACTCAGTGCAGGTGCACTG
GAAGGACAGGGGCAACAGTGGCTGCAGGACCCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig77120:442..974-

>mRNA_M-pyrifera_M_contig77120.18176.1 ID=mRNA_M-pyrifera_M_contig77120.18176.1|Name=mRNA_M-pyrifera_M_contig77120.18176.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=900bp|location=Sequence derived from alignment at M-pyrifera_M_contig77120:442..974- (Macrocystis pyrifera P11B4 male)
ATGGGGAGAGATTCCGCGCTCGGCAATCTGCCCCACAACTGGTTTCCAAA
CTCCCACACACAACAAGATCTCATCCTCTGTGGTCAAGCCGCACTCCTCA
CTTGGATGGGGAGAGATTCCGCGCTCGGCAATCTGCCCCACAACTGGTTT
CCAAACTCCCACACACAACAAGATCTCATCCTCTGTGGTCAAGCCGCACT
CCTCACTTGGGGGAATATTGCGAATTTGGATCATGAGGAGAGTTTGATTC
CAAATGCGACATTGTTTGAGGCAGCATATGCAAGATCCAAGCAACTTCGT
CCGTATCTTGCGGGTGCTTATCCACTTCGAGAGGCTGCGTTGCTGTTTGC
AGAGAGTTTGCGAGACGATCTCTCCCCACTGACTGAAACGATTCCAGCGG
GTCCTGATGTGGGAGAGTGGAGGCAACTACTCATGCCTACAGTTGGGGTG
TGGTCAACTTTGGAACGGACTGGTGTGCAAGCTGGAGTGGTTATGGATTG
GCAACTCAGTGCAGGTGCACTGGAAGGACAGGGGCAACAGTGGCTGCAGG
ACCCAGGGAATATTGCGAATTTGGATCATGAGGAGAGTTTGATTCCAAAT
GCGACATTGTTTGAGGCAGCATATGCAAGATCCAAGCAACTTCGTCCGTA
TCTTGCGGGTGCTTATCCACTTCGAGAGGCTGCGTTGCTGTTTGCAGAGA
GTTTGCGAGACGATCTCTCCCCACTGACTGAAACGATTCCAGCGGGTCCT
GATGTGGGAGAGTGGAGGCAACTACTCATGCCTACAGTTGGGGTGTGGTC
AACTTTGGAACGGACTGGTGTGCAAGCTGGAGTGGTTATGGATTGGCAAC
TCAGTGCAGGTGCACTGGAAGGACAGGGGCAACAGTGGCTGCAGGACCCA
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