mRNA_M-pyrifera_M_contig77115.18171.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig77115.18171.1
Unique NamemRNA_M-pyrifera_M_contig77115.18171.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig77115.18171.1 vs. uniprot
Match: A0A3C0ANC6_9PLAN (IS66 family transposase (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A3C0ANC6_9PLAN)

HSP 1 Score: 395 bits (1016), Expect = 2.250e-136
Identity = 198/253 (78.26%), Postives = 220/253 (86.96%), Query Frame = 1
Query:    1 YDFTMSRRRDGPQAFLQGFRGYLHADAYGGYDAIYLKSGSNVIEVACWAHARRKFFDARNNYPREAYQVLEWIQQLYDIEDRGRELSADARRALRRAEADPVLDRLDAYLTQLTATVLPKSALAKAVTYARNQWDALRCYTTDGRLTIDNNTSERTLRAQAIGRKNWLFLGSTDAGPRAAVLDTILAGAKRHRLEPWAYVRELLMRQHAENASLEELLPDRWAAQHPEAVLRHRLDESRRKATARRDRRRRRR 759
            YDFTMSR RDGPQ FL+ FRGYLHADAY GYDAI+L S S ++EVACWAHARRKFFDAR NYPREA+QVLEWI QLYDIEDR R+LSA+AR  LR AEA+P LD+L AYL QL +T+LPKSALAKA+TY RNQWDALR YTTDGRLTIDNNTSERTLR QAIGRKNWLFLGS +AGPRAAVL T+LAGAKRHR+EPW YVRELLMR HA++  LEE+LPD WA  H E+VL HRL+ESR KA A+RDRR+RRR
Sbjct:   61 YDFTMSRGRDGPQRFLENFRGYLHADAYAGYDAIFLGSDSEIVEVACWAHARRKFFDARKNYPREAHQVLEWIGQLYDIEDRARDLSAEARCELRCAEANPALDQLGAYLAQLASTLLPKSALAKAITYTRNQWDALRRYTTDGRLTIDNNTSERTLRHQAIGRKNWLFLGSKNAGPRAAVLSTVLAGAKRHRIEPWGYVRELLMRLHADDTRLEEMLPDHWATAHSESVLTHRLNESRAKAAAKRDRRQRRR 313          
BLAST of mRNA_M-pyrifera_M_contig77115.18171.1 vs. uniprot
Match: A0A2E2C645_9PLAN (Transposase n=2 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2C645_9PLAN)

HSP 1 Score: 397 bits (1020), Expect = 3.570e-134
Identity = 199/253 (78.66%), Postives = 221/253 (87.35%), Query Frame = 1
Query:    1 YDFTMSRRRDGPQAFLQGFRGYLHADAYGGYDAIYLKSGSNVIEVACWAHARRKFFDARNNYPREAYQVLEWIQQLYDIEDRGRELSADARRALRRAEADPVLDRLDAYLTQLTATVLPKSALAKAVTYARNQWDALRCYTTDGRLTIDNNTSERTLRAQAIGRKNWLFLGSTDAGPRAAVLDTILAGAKRHRLEPWAYVRELLMRQHAENASLEELLPDRWAAQHPEAVLRHRLDESRRKATARRDRRRRRR 759
            YDFTMSR RDGPQ FL+ FRGYLHADAY GYDAI+L S S ++EVACWAHARRKFFDAR NYPREA+QVLEWI QLYDIEDR R+LSA+AR  LR AEA+PVLD+L AYL QL +T+LPKSALAKA+TY RNQWDALR YTTDGRLTIDNNTSERTLR QAIGRKNWLFLGS +AGPRAAVL T+LAGAKRHR+EPW YVRELLMR HA++  LEE+LPD WA  H E+VL HRL+ESR KA A+RDRR+RRR
Sbjct:  255 YDFTMSRGRDGPQRFLENFRGYLHADAYAGYDAIFLGSDSEIVEVACWAHARRKFFDARKNYPREAHQVLEWIGQLYDIEDRARDLSAEARCELRCAEANPVLDQLGAYLAQLASTLLPKSALAKAITYTRNQWDALRRYTTDGRLTIDNNTSERTLRHQAIGRKNWLFLGSKNAGPRAAVLSTVLAGAKRHRIEPWGYVRELLMRLHADDTRLEEMLPDHWATAHSESVLTHRLNESRAKAAAKRDRRQRRR 507          
BLAST of mRNA_M-pyrifera_M_contig77115.18171.1 vs. uniprot
Match: A0A838QWU5_9BACT (IS66 family transposase n=2 Tax=Pirellulales bacterium TaxID=2715253 RepID=A0A838QWU5_9BACT)

HSP 1 Score: 363 bits (933), Expect = 3.910e-122
Identity = 180/250 (72.00%), Postives = 207/250 (82.80%), Query Frame = 1
Query:    1 YDFTMSRRRDGPQAFLQGFRGYLHADAYGGYDAIYLKSGSNVIEVACWAHARRKFFDARNNYPREAYQVLEWIQQLYDIEDRGRELSADARRALRRAEADPVLDRLDAYLTQLTATVLPKSALAKAVTYARNQWDALRCYTTDGRLTIDNNTSERTLRAQAIGRKNWLFLGSTDAGPRAAVLDTILAGAKRHRLEPWAYVRELLMRQHAENASLEELLPDRWAAQHPEAVLRHRLDESRRKATARRDRRR 750
            YDFT SR RDGP  FL GF+GYLHADAYGGYD IYL S  ++ EVACWAHARRKFFDA  + PREA+Q+LEWI+QLYD+EDR RE SADARR LR AEA+PVLDR++A L QL    LPKS L KAV YA+NQW ALR YTTDGRL+IDNN SERTLR QA+GRKNWLF+GS  AGPRAAVL TILAGAKRHR+EPW Y+RELL+R H ++  L+E+LPD+WAA HPE+VL +RL+ESRRKA A+  RRR
Sbjct:  174 YDFTESRARDGPAKFLAGFQGYLHADAYGGYDHIYLGSNDSIREVACWAHARRKFFDAIKSSPREAHQILEWIRQLYDVEDRARETSADARRTLRAAEAEPVLDRIEACLAQLERRALPKSVLGKAVAYAQNQWPALRRYTTDGRLSIDNNVSERTLRHQAVGRKNWLFVGSAQAGPRAAVLFTILAGAKRHRIEPWTYLRELLLRLHDDDLRLDEMLPDKWAANHPESVLTYRLEESRRKAAAKSTRRR 423          
BLAST of mRNA_M-pyrifera_M_contig77115.18171.1 vs. uniprot
Match: A0A524K4V6_9GAMM (IS66 family transposase n=1 Tax=Chromatiales bacterium TaxID=2026725 RepID=A0A524K4V6_9GAMM)

HSP 1 Score: 361 bits (927), Expect = 2.540e-120
Identity = 183/257 (71.21%), Postives = 210/257 (81.71%), Query Frame = 1
Query:    1 YDFTMSRRRDGPQAFLQGFRGYLHADAYGGYDAIYLKSGSNVIEVACWAHARRKFFDARNNYPREAYQVLEWIQQLYDIEDRGRELSADARRALRRAEADPVLDRLDAYLTQLTATVLPKSALAKAVTYARNQWDALRCYTTDGRLTIDNNTSERTLRAQAIGRKNWLFLGSTDAGPRAAVLDTILAGAKRHRLEPWAYVRELLMRQHAENASLEELLPDRWAAQHPEAVLRHRLDESRRKATARRDRRRRRRALAK 771
            YDFT SR R GP  FL G+ GYLHADAY GYDA++L   S V EVACW+HARRKFFDA + YPR+A+QVLEWI+QLYDIEDR  +LS +ARR LR AE+ P+LDR++AYL +L  +VLPKS LAKAVTYARNQW ALR YT DGRLTIDNN SERTLR QA+GR+NWLFLG+  AGPRAAVL TILAGAKRHR+EPWAYVR+LL+R HAE+  LEE+LPDRWAA HPEA+L HRL ESR +A   R RR  RRA A+
Sbjct:  242 YDFTASRSRAGPTRFLAGYSGYLHADAYTGYDAMFLDVASGVSEVACWSHARRKFFDAVSGYPRQAHQVLEWIRQLYDIEDRAHDLSVEARRELRTAESSPILDRIEAYLAKLARSVLPKSNLAKAVTYARNQWQALRRYTEDGRLTIDNNVSERTLRHQAVGRRNWLFLGNEAAGPRAAVLYTILAGAKRHRIEPWAYVRDLLLRLHAEDPCLEEMLPDRWAAAHPEAILSHRLHESRTQAIRTRARRAHRRARAR 498          
BLAST of mRNA_M-pyrifera_M_contig77115.18171.1 vs. uniprot
Match: X0WH03_9ZZZZ (DDE_Tnp_IS66 domain-containing protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X0WH03_9ZZZZ)

HSP 1 Score: 352 bits (902), Expect = 6.530e-120
Identity = 175/249 (70.28%), Postives = 204/249 (81.93%), Query Frame = 1
Query:    1 YDFTMSRRRDGPQAFLQGFRGYLHADAYGGYDAIYLKSGSNVIEVACWAHARRKFFDARNNYPREAYQVLEWIQQLYDIEDRGRELSADARRALRRAEADPVLDRLDAYLTQLTATVLPKSALAKAVTYARNQWDALRCYTTDGRLTIDNNTSERTLRAQAIGRKNWLFLGSTDAGPRAAVLDTILAGAKRHRLEPWAYVRELLMRQHAENASLEELLPDRWAAQHPEAVLRHRLDESRRKATARRDRR 747
            YDFT +R R GP +FL+ + GYLHADAY GYDA+++  G +V+EVACW+HARRKFFDA ++ PREA+QVLEWI QL DIEDR RE S D RR LR  E++P+LD+++AYL +L  T LPKS L KAVTYARNQW+ALR YT DGRLT DNN SERTLR QAIGRKNWLFLGS  AGPR+AVL TILAGAKRHR+EPWAYVR+LL+R HA++  LEELLPDRWAA HPEA+L HRL+ESR KA   R RR
Sbjct:    7 YDFTNNRTRAGPMSFLESYSGYLHADAYTGYDAMFVDVGRDVLEVACWSHARRKFFDAVDSNPREAHQVLEWIWQLSDIEDRAREWSVDTRRDLRARESNPILDKMEAYLAELAQTTLPKSCLRKAVTYARNQWEALRRYTEDGRLTADNNVSERTLRHQAIGRKNWLFLGSEAAGPRSAVLYTILAGAKRHRIEPWAYVRDLLLRLHADDLRLEELLPDRWAAAHPEAILTHRLEESRAKADRTRRRR 255          
BLAST of mRNA_M-pyrifera_M_contig77115.18171.1 vs. uniprot
Match: A0A838QWZ4_9BACT (IS66 family transposase n=1 Tax=Pirellulales bacterium TaxID=2715253 RepID=A0A838QWZ4_9BACT)

HSP 1 Score: 352 bits (902), Expect = 2.070e-116
Identity = 176/250 (70.40%), Postives = 205/250 (82.00%), Query Frame = 1
Query:    1 YDFTMSRRRDGPQAFLQGFRGYLHADAYGGYDAIYLKSGSNVIEVACWAHARRKFFDARNNYPREAYQVLEWIQQLYDIEDRGRELSADARRALRRAEADPVLDRLDAYLTQLTATVLPKSALAKAVTYARNQWDALRCYTTDGRLTIDNNTSERTLRAQAIGRKNWLFLGSTDAGPRAAVLDTILAGAKRHRLEPWAYVRELLMRQHAENASLEELLPDRWAAQHPEAVLRHRLDESRRKATARRDRRR 750
            YDFT SR RDGP  FL+GF+GYLHADAYGGYD IYL S   + EVACWAHARRKFFD R++ PR+A+Q+LEWI QLYDIED+ R LSADARR +R + A+PVL R++A L +L    LPKSAL+KAV YARNQW AL  YT DGRL+IDNN SERTLR QAIGRKNWLFLGS  AGPRAA+L T+LAGAKRHR+EPW Y+RELL+R H ++  L+E+LPDRWAAQHPEAVL +RL+ESRRK  A+  RRR
Sbjct:  250 YDFTESRARDGPAKFLEGFQGYLHADAYGGYDHIYLGSNDAIREVACWAHARRKFFDTRDSSPRDAHQILEWIGQLYDIEDQARPLSADARRDIRASHAEPVLARINARLAELERRALPKSALSKAVWYARNQWQALCRYTEDGRLSIDNNVSERTLRHQAIGRKNWLFLGSQQAGPRAAILFTMLAGAKRHRIEPWTYLRELLIRLHDDDPRLDEMLPDRWAAQHPEAVLTYRLEESRRKTAAQSTRRR 499          
BLAST of mRNA_M-pyrifera_M_contig77115.18171.1 vs. uniprot
Match: A0A0F9KVN0_9ZZZZ (Uncharacterized protein n=1 Tax=marine sediment metagenome TaxID=412755 RepID=A0A0F9KVN0_9ZZZZ)

HSP 1 Score: 347 bits (891), Expect = 4.800e-114
Identity = 176/257 (68.48%), Postives = 207/257 (80.54%), Query Frame = 1
Query:    1 YDFTMSRRRDGPQAFLQGFRGYLHADAYGGYDAIYLKSGSNVIEVACWAHARRKFFDARNNYPREAYQVLEWIQQLYDIEDRGRELSADARRALRRAEADPVLDRLDAYLTQLTATVLPKSALAKAVTYARNQWDALRCYTTDGRLTIDNNTSERTLRAQAIGRKNWLFLGSTDAGPRAAVLDTILAGAKRHRLEPWAYVRELLMRQHAENASLEELLPDRWAAQHPEAVLRHRLDESRRKATARRDRRRRRRALAK 771
            YDFT S  RDGP  FLQ + GYLHADAY GYD+I+   GS++IEVACW+H R +FF A  + PREA+QVLEW++QLYDIEDR  + S DARR LR  EA+PVLD+++AYL +L    LPKS+LAKAVTYARNQW+ALR YT DGRLTIDNN SERTLR QAIGRKN+LFLGS  AGPRAAVL TILAGAKRHR+EPWAYV +LL+R +A++ +LEE+LPD WAA HP+A+L HRL+ESRRKA   R RR  RRA  K
Sbjct:  307 YDFTNSHSRDGPADFLQSYSGYLHADAYTGYDSIFSAPGSSIIEVACWSHTRSRFFKAVGSNPREAHQVLEWVRQLYDIEDRAHDWSVDARRELRAGEANPVLDKIEAYLAELAPRALPKSSLAKAVTYARNQWEALRRYTDDGRLTIDNNVSERTLRHQAIGRKNYLFLGSEAAGPRAAVLYTILAGAKRHRIEPWAYVCDLLLRLNADDPNLEEMLPDHWAASHPDAILTHRLEESRRKAVRTRARRAHRRARQK 563          
BLAST of mRNA_M-pyrifera_M_contig77115.18171.1 vs. uniprot
Match: A0A5B9W533_9BACT (Transposase IS66 family protein n=3 Tax=Aquisphaera giovannonii TaxID=406548 RepID=A0A5B9W533_9BACT)

HSP 1 Score: 347 bits (890), Expect = 7.190e-114
Identity = 178/253 (70.36%), Postives = 204/253 (80.63%), Query Frame = 1
Query:    1 YDFTMSRRRDGPQAFLQGFRGYLHADAYGGYDAIYLKSGSNVIEVACWAHARRKFFDARNNYPREAYQVLEWIQQLYDIEDRGRELSADARRALRRAEADPVLDRLDAYLTQLTATVLPKSALAKAVTYARNQWDALRCYTTDGRLTIDNNTSERTLRAQAIGRKNWLFLGSTDAGPRAAVLDTILAGAKRHRLEPWAYVRELLMRQHAENASLEELLPDRWAAQHPEAVLRHRLDESRRKAT---ARRDRRR 750
            YDFTMSR RDGP  FL+G+RGYL ADAYGGYD IY  S   + EVACWAHARRKFF+AR+N P EA ++LEW+++LYDIEDRGREL+A+ RR+LRR E+ P+LDR++AY+ +L    LPKSAL KA+TYARNQ  ALR Y  DGRLTIDNN SER LR QAIGRKNWLFLGS  AGPRAAVL TILAGAKRHRLEPWAY+RE+L+   A  A LE LLPDRWAA HPE VL HRL+ESR++A    A RDRRR
Sbjct:  306 YDFTMSRERDGPATFLKGYRGYLQADAYGGYDGIYAGSDGAIAEVACWAHARRKFFEARSNAPAEANRILEWVRRLYDIEDRGRELAAEDRRSLRRRESVPILDRIEAYVDELRPRALPKSALGKALTYARNQRAALRRYVEDGRLTIDNNASERVLRLQAIGRKNWLFLGSEAAGPRAAVLFTILAGAKRHRLEPWAYLREVLLHLAAGEADLESLLPDRWAAAHPEHVLEHRLEESRQRAARQKAIRDRRR 558          
BLAST of mRNA_M-pyrifera_M_contig77115.18171.1 vs. uniprot
Match: UPI0013EBF35E (IS66 family transposase n=1 Tax=Aquisphaera sp. JC669 TaxID=2712864 RepID=UPI0013EBF35E)

HSP 1 Score: 332 bits (851), Expect = 1.900e-108
Identity = 171/256 (66.80%), Postives = 203/256 (79.30%), Query Frame = 1
Query:    1 YDFTMSRRRDGPQAFLQGFRGYLHADAYGGYDAIYLKSGSNVIEVACWAHARRKFFDARNNYPREAYQVLEWIQQLYDIEDRGRELSADARRALRRAEADPVLDRLDAYLTQLTATVLPKSALAKAVTYARNQWDALRCYTTDGRLTIDNNTSERTLRAQAIGRKNWLFLGSTDAGPRAAVLDTILAGAKRHRLEPWAYVRELLMRQHA--ENASLEELLPDRWAAQHPEAVLRHRLDESRRKATARRDRRRRRRA 762
            YDFTMSR R+GP  FL+ +RGYL ADAYGGYD IY  S   ++EVACWAHARRKFF+AR N P EA ++LEW++QLYDIEDRGR+L A+ RRALR+ E+  +L +++AY+ +L    LPKS++ KA+TYARNQ  ALR Y  DGRLTIDNN SERTLR QAIGRKNWLFLGS  AGPRAAVL TILAGAKRHRLEPW Y+RE+++   A  E A LEELLPDRWAA HPE VL HRL+ESR+KA  ++  R+ RRA
Sbjct:  268 YDFTMSRERNGPATFLKEYRGYLQADAYGGYDGIYTGSDGTLVEVACWAHARRKFFEARANAPAEANRILEWVRQLYDIEDRGRDLMAEDRRALRQRESVSLLGKIEAYIDELAPRTLPKSSMGKALTYARNQRAALRRYVGDGRLTIDNNVSERTLRLQAIGRKNWLFLGSEAAGPRAAVLFTILAGAKRHRLEPWVYLREVILHLAADGEGADLEELLPDRWAAAHPEHVLEHRLEESRQKAARQKATRKHRRA 523          
BLAST of mRNA_M-pyrifera_M_contig77115.18171.1 vs. uniprot
Match: L0D757_SINAD (Transposase n=7 Tax=Singulisphaera TaxID=466152 RepID=L0D757_SINAD)

HSP 1 Score: 308 bits (790), Expect = 5.760e-99
Identity = 159/245 (64.90%), Postives = 186/245 (75.92%), Query Frame = 1
Query:    1 YDFTMSRRRDGPQAFLQGFRGYLHADAYGGYDAIYLKSGSNVIEVACWAHARRKFFDARNNYPREAYQVLEWIQQLYDIEDRGRELSADARRALRRAEADPVLDRLDAYLTQLTATVLPKSALAKAVTYARNQWDALRCYTTDGRLTIDNNTSERTLRAQAIGRKNWLFLGSTDAGPRAAVLDTILAGAKRHRLEPWAYVRELLMRQHAENASLEELLPDRWAAQHPEAVLRHRLDESRRKATAR 735
            YD T SR+RDGP  FL GF GYL ADAY GYD +YL S S + EVACWAHARRKF+DAR++ P  A  +LE I++LYD+EDR R LS +AR+ALR  EA P+L+RL   L +L    LPKSAL +A+TYARNQW AL  YT DGRLTIDNN +ER LR QAIGRKNWLFLG+ DAGPRAAVL TI+AGAKRHRLEPWAYV+++LM        +E+LLPDRWA  HP  VL HRL+ESR +A  R
Sbjct:  299 YDHTASRKRDGPATFLAGFVGYLQADAYAGYDGLYLGSPSAIHEVACWAHARRKFYDARSSSPGNAGLILEAIRRLYDVEDRVRGLSVEARQALRAQEAVPILERLRGDLDRLADQSLPKSALGQALTYARNQWKALCRYTEDGRLTIDNNVAERRLRDQAIGRKNWLFLGNVDAGPRAAVLSTIMAGAKRHRLEPWAYVKDVLMTLSVAPERVEDLLPDRWARNHPGHVLTHRLEESRERARRR 543          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig77115.18171.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C0ANC6_9PLAN2.250e-13678.26IS66 family transposase (Fragment) n=1 Tax=Plancto... [more]
A0A2E2C645_9PLAN3.570e-13478.66Transposase n=2 Tax=Planctomycetaceae TaxID=126 Re... [more]
A0A838QWU5_9BACT3.910e-12272.00IS66 family transposase n=2 Tax=Pirellulales bacte... [more]
A0A524K4V6_9GAMM2.540e-12071.21IS66 family transposase n=1 Tax=Chromatiales bacte... [more]
X0WH03_9ZZZZ6.530e-12070.28DDE_Tnp_IS66 domain-containing protein (Fragment) ... [more]
A0A838QWZ4_9BACT2.070e-11670.40IS66 family transposase n=1 Tax=Pirellulales bacte... [more]
A0A0F9KVN0_9ZZZZ4.800e-11468.48Uncharacterized protein n=1 Tax=marine sediment me... [more]
A0A5B9W533_9BACT7.190e-11470.36Transposase IS66 family protein n=3 Tax=Aquisphaer... [more]
UPI0013EBF35E1.900e-10866.80IS66 family transposase n=1 Tax=Aquisphaera sp. JC... [more]
L0D757_SINAD5.760e-9964.90Transposase n=7 Tax=Singulisphaera TaxID=466152 Re... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig77115contigM-pyrifera_M_contig77115:234..1013 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score303.1
Seed ortholog evalue1.2e-79
Seed eggNOG ortholog886293.Sinac_0599
KEGG koko:K07484
Hectar predicted targeting categoryother localisation
EggNOG free text desc.PFAM Transposase IS66 family
EggNOG OGs2IXH0@203682,COG4974@1,COG4974@2
COG Functional cat.L
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size780
Cds size768
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816671.8745294-CDS-M-pyrifera_M_contig77115:233..10011622816671.8745294-CDS-M-pyrifera_M_contig77115:233..1001Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77115 234..1001 -
1692278110.6308181-CDS-M-pyrifera_M_contig77115:233..10011692278110.6308181-CDS-M-pyrifera_M_contig77115:233..1001Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77115 234..1001 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816671.887001-UTR-M-pyrifera_M_contig77115:1001..10131622816671.887001-UTR-M-pyrifera_M_contig77115:1001..1013Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig77115 1002..1013 -
1692278110.6426845-UTR-M-pyrifera_M_contig77115:1001..10131692278110.6426845-UTR-M-pyrifera_M_contig77115:1001..1013Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig77115 1002..1013 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig77115.18171.1prot_M-pyrifera_M_contig77115.18171.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig77115 234..1001 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig77115.18171.1

>prot_M-pyrifera_M_contig77115.18171.1 ID=prot_M-pyrifera_M_contig77115.18171.1|Name=mRNA_M-pyrifera_M_contig77115.18171.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=256bp
MSRRRDGPQAFLQGFRGYLHADAYGGYDAIYLKSGSNVIEVACWAHARRK
FFDARNNYPREAYQVLEWIQQLYDIEDRGRELSADARRALRRAEADPVLD
RLDAYLTQLTATVLPKSALAKAVTYARNQWDALRCYTTDGRLTIDNNTSE
RTLRAQAIGRKNWLFLGSTDAGPRAAVLDTILAGAKRHRLEPWAYVRELL
MRQHAENASLEELLPDRWAAQHPEAVLRHRLDESRRKATARRDRRRRRRA
LAKSR*
back to top

mRNA from alignment at M-pyrifera_M_contig77115:234..1013-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig77115.18171.1 ID=mRNA_M-pyrifera_M_contig77115.18171.1|Name=mRNA_M-pyrifera_M_contig77115.18171.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=780bp|location=Sequence derived from alignment at M-pyrifera_M_contig77115:234..1013- (Macrocystis pyrifera P11B4 male)
TATGACTTCACGATGAGTCGACGCCGAGATGGTCCGCAGGCATTCCTACA GGGTTTTCGCGGCTATCTTCACGCGGATGCCTACGGCGGTTACGACGCGA TCTACCTGAAGTCTGGAAGTAACGTGATCGAAGTTGCGTGCTGGGCCCAT GCGCGGCGCAAGTTCTTCGATGCGCGCAACAACTATCCGCGCGAAGCGTA CCAAGTGCTGGAATGGATTCAGCAGTTGTACGACATTGAAGATCGTGGGC GTGAGTTATCGGCCGACGCCCGCCGCGCACTGCGTCGTGCGGAGGCCGAC CCCGTACTGGATCGCCTCGATGCTTATCTCACGCAACTCACGGCCACGGT GCTTCCCAAGAGCGCTCTGGCCAAAGCGGTCACGTATGCCCGCAACCAGT GGGATGCCCTGCGGTGCTACACGACCGACGGGCGACTGACGATCGACAAC AACACATCGGAGCGCACTCTGCGTGCTCAAGCGATCGGACGGAAGAATTG GCTCTTTCTTGGCAGCACCGATGCGGGGCCGCGGGCGGCCGTGCTGGACA CGATCCTGGCCGGTGCGAAACGGCACCGCCTCGAACCGTGGGCCTACGTC CGCGAACTCCTCATGCGACAGCACGCCGAGAATGCCTCCCTCGAAGAGCT GCTTCCCGATCGCTGGGCGGCACAGCATCCGGAGGCCGTGCTGCGGCACC GACTGGACGAATCCCGCCGCAAAGCCACCGCCAGGCGCGACCGACGCCGA CGTCGTCGAGCCCTCGCCAAATCCCGCTGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig77115:234..1013-

>mRNA_M-pyrifera_M_contig77115.18171.1 ID=mRNA_M-pyrifera_M_contig77115.18171.1|Name=mRNA_M-pyrifera_M_contig77115.18171.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1536bp|location=Sequence derived from alignment at M-pyrifera_M_contig77115:234..1013- (Macrocystis pyrifera P11B4 male)
ATGAGTCGACGCCGAGATGGTCCGCAGGCATTCCTACAGGGTTTTCGCGG
CTATCTTCACGCGGATGCCTACGGCGGTTACGACGCGATCTACCTGAAGT
CTGGAAGTAACGTGATCGAAGTTGCGTGCTGGGCCCATGCGCGGCGCAAG
TTCTTCGATGCGCGCAACAACTATCCGCGCGAAGCGTACCAAGTGCTGGA
ATGGATTCAGCAGTTGTACGACATTGAAGATCGTGGGCGTGAGTTATCGG
CCGACGCCCGCCGCGCACTGCGTCGTGCGGAGGCCGACCCCGTACTGGAT
CGCCTCGATGCTTATCTCACGCAACTCACGGCCACGGTGCTTCCCAAGAG
CGCTCTGGCCAAAGCGGTCACGTATGCCCGCAACCAGTGGGATGCCCTGC
GGTGCTACACGACCGACGGGCGACTGACGATCGACAACAACACATCGGAG
CGCACTCTGCGTGCTCAAGCGATCGGACGGAAGAATTGGCTCTTTCTTGG
CAGCACCGATGCGGGGCCGCGGGCGGCCGTGCTGGACACGATCCTGGCCG
GTGCGAAACGGCACCGCCTCGAACCGTGGGCCTACGTCCGCGAACTCCTC
ATGCGACAGCACGCCGAGAATGCCTCCCTCGAAGAGCTGCTTCCCGATCG
CTGGGCGGCACAGCATCCGGAGGCCGTGCTGCGGCACCGACTGGACGAAT
CCCGCCGCAAAGCCACCGCCAGGCGCGACCGACGCCGACGTCGTCGAGCC
CTCGCCAAATCCCGCTGAATGAGTCGACGCCGAGATGGTCCGCAGGCATT
CCTACAGGGTTTTCGCGGCTATCTTCACGCGGATGCCTACGGCGGTTACG
ACGCGATCTACCTGAAGTCTGGAAGTAACGTGATCGAAGTTGCGTGCTGG
GCCCATGCGCGGCGCAAGTTCTTCGATGCGCGCAACAACTATCCGCGCGA
AGCGTACCAAGTGCTGGAATGGATTCAGCAGTTGTACGACATTGAAGATC
GTGGGCGTGAGTTATCGGCCGACGCCCGCCGCGCACTGCGTCGTGCGGAG
GCCGACCCCGTACTGGATCGCCTCGATGCTTATCTCACGCAACTCACGGC
CACGGTGCTTCCCAAGAGCGCTCTGGCCAAAGCGGTCACGTATGCCCGCA
ACCAGTGGGATGCCCTGCGGTGCTACACGACCGACGGGCGACTGACGATC
GACAACAACACATCGGAGCGCACTCTGCGTGCTCAAGCGATCGGACGGAA
GAATTGGCTCTTTCTTGGCAGCACCGATGCGGGGCCGCGGGCGGCCGTGC
TGGACACGATCCTGGCCGGTGCGAAACGGCACCGCCTCGAACCGTGGGCC
TACGTCCGCGAACTCCTCATGCGACAGCACGCCGAGAATGCCTCCCTCGA
AGAGCTGCTTCCCGATCGCTGGGCGGCACAGCATCCGGAGGCCGTGCTGC
GGCACCGACTGGACGAATCCCGCCGCAAAGCCACCGCCAGGCGCGACCGA
CGCCGACGTCGTCGAGCCCTCGCCAAATCCCGCTGA
back to top