mRNA_M-pyrifera_M_contig77095.18169.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig77095.18169.1
Unique NamemRNA_M-pyrifera_M_contig77095.18169.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig77095.18169.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig77095contigM-pyrifera_M_contig77095:570..965 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size159
Cds size159
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816671.7853296-CDS-M-pyrifera_M_contig77095:569..6611622816671.7853296-CDS-M-pyrifera_M_contig77095:569..661Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77095 570..661 +
1692278110.599298-CDS-M-pyrifera_M_contig77095:569..6611692278110.599298-CDS-M-pyrifera_M_contig77095:569..661Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77095 570..661 +
1622816671.7988317-CDS-M-pyrifera_M_contig77095:898..9651622816671.7988317-CDS-M-pyrifera_M_contig77095:898..965Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77095 899..965 +
1692278110.6102464-CDS-M-pyrifera_M_contig77095:898..9651692278110.6102464-CDS-M-pyrifera_M_contig77095:898..965Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77095 899..965 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig77095.18169.1prot_M-pyrifera_M_contig77095.18169.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig77095 570..965 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig77095.18169.1

>prot_M-pyrifera_M_contig77095.18169.1 ID=prot_M-pyrifera_M_contig77095.18169.1|Name=mRNA_M-pyrifera_M_contig77095.18169.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=53bp
RAGGGGGGGSSGSGTPSSSGSRASLLSSGRQGGGRRSGGGVLIGLGGDGG
GQG
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mRNA from alignment at M-pyrifera_M_contig77095:570..965+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig77095.18169.1 ID=mRNA_M-pyrifera_M_contig77095.18169.1|Name=mRNA_M-pyrifera_M_contig77095.18169.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=396bp|location=Sequence derived from alignment at M-pyrifera_M_contig77095:570..965+ (Macrocystis pyrifera P11B4 male)
AGGGCGGGCGGGGGTGGGGGTGGAGGCAGCTCGGGGAGCGGCACTCCTTC
GTCTTCGGGATCGCGGGCGTCGCTCCTCTCTTCAGGGCGGCAGTCCGCTA
CGCTAACCCCCGCACTATCCCCTACTAACGCCGCGGGGGCGGGGGCGCGA
CCCCCTGCTGCTTTTTGCCCTGGAGGGCAATCGGCTAACCCGGGACTCCC
CGACGGCGGAACGTCTGCGGCGGTGGTAGCCGGGGGGGCGGGGGGGTTGG
CGTTGGTGATCCCGGGGGAGCGGAGCTTGTTCGCCGGTGGTCGTGGAAGA
GGGGTTTCGCCGAAAGCGGGACCGGAAAGGGGTGGTGGCCGTCGTAGCGG
CGGAGGTGTGTTGATCGGCCTCGGTGGCGATGGCGGCGGGCAGGGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig77095:570..965+

>mRNA_M-pyrifera_M_contig77095.18169.1 ID=mRNA_M-pyrifera_M_contig77095.18169.1|Name=mRNA_M-pyrifera_M_contig77095.18169.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=318bp|location=Sequence derived from alignment at M-pyrifera_M_contig77095:570..965+ (Macrocystis pyrifera P11B4 male)
AGGGCGGGCGGGGGTGGGGGTGGAGGCAGCTCGGGGAGCGGCACTCCTTC
GTCTTCGGGATCGCGGGCGTCGCTCCTCTCTTCAGGGCGGCAAGGGCGGG
CGGGGGTGGGGGTGGAGGCAGCTCGGGGAGCGGCACTCCTTCGTCTTCGG
GATCGCGGGCGTCGCTCCTCTCTTCAGGGCGGCAGGGTGGTGGCCGTCGT
AGCGGCGGAGGTGTGTTGATCGGCCTCGGTGGCGATGGCGGCGGGCAGGG
GGGGTGGTGGCCGTCGTAGCGGCGGAGGTGTGTTGATCGGCCTCGGTGGC
GATGGCGGCGGGCAGGGG
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